data_GYG
#

_chem_comp.id                                   GYG
_chem_comp.name                                 "(1R)-4-acetamido-1,5-anhydro-3-carbamimidamido-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H22 N4 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(1R)-4-(acetylamino)-1,5-anhydro-3-carbamimidamido-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-11-30
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.379
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GYG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6BR5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GYG
_pdbx_chem_comp_synonyms.name        "(1R)-4-(acetylamino)-1,5-anhydro-3-carbamimidamido-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GYG  C2    C03   C  0  1  N  N  R   7.282  24.957   9.650  -0.388   1.670   0.380  C2    GYG   1  
GYG  C3    C04   C  0  1  N  N  N   7.705  26.405   9.468   1.043   1.566  -0.156  C3    GYG   2  
GYG  C4    C05   C  0  1  N  N  S   8.706  26.776  10.519   1.666   0.253   0.327  C4    GYG   3  
GYG  C07   C07   C  0  1  N  N  N   9.620  29.038  11.226   4.085   0.695   0.380  C07   GYG   4  
GYG  C5    C10   C  0  1  N  N  R   9.791  25.771  10.638   0.787  -0.915  -0.130  C5    GYG   5  
GYG  C10   C12   C  0  1  N  N  N  11.861  26.761  11.699   2.310  -2.812  -0.284  C10   GYG   6  
GYG  C11   C13   C  0  1  N  N  N  12.668  27.078  12.951   2.872  -4.104   0.250  C11   GYG   7  
GYG  C6    C15   C  0  1  N  N  R   9.258  24.349  10.795  -0.633  -0.715   0.405  C6    GYG   8  
GYG  C7    C16   C  0  1  N  N  R  10.295  23.278  10.805  -1.532  -1.847  -0.098  C7    GYG   9  
GYG  C8    C18   C  0  1  N  N  R   9.617  21.915  11.050  -2.976  -1.581   0.332  C8    GYG  10  
GYG  C9    C20   C  0  1  N  N  N  10.652  20.783  10.981  -3.874  -2.713  -0.171  C9    GYG  11  
GYG  N06   N06   N  0  1  N  N  N   9.291  28.128  10.160   3.008   0.109  -0.242  N06   GYG  12  
GYG  N08   N08   N  0  1  N  N  N  10.174  30.319  10.881   3.912   1.378   1.476  N08   GYG  13  
GYG  N09   N09   N  0  1  N  N  N   9.422  28.727  12.425   5.345   0.559  -0.154  N09   GYG  14  
GYG  N5    N11   N  0  1  N  N  N  10.589  26.108  11.850   1.333  -2.172   0.389  N5    GYG  15  
GYG  O01   O01   O  0  1  N  N  N   5.006  25.433   8.274  -0.543   4.333   0.330  O01   GYG  16  
GYG  O10   O14   O  0  1  N  N  N  12.270  27.039  10.622   2.736  -2.348  -1.321  O10   GYG  17  
GYG  O7    O17   O  0  1  N  N  N  10.867  23.235   9.530  -1.464  -1.912  -1.524  O7    GYG  18  
GYG  O8    O19   O  0  1  N  N  N   9.015  21.912  12.312  -3.044  -1.516   1.758  O8    GYG  19  
GYG  O9    O21   O  0  1  N  N  N  11.598  20.981  11.994  -5.238  -2.407   0.129  O9    GYG  20  
GYG  O6    O22   O  0  1  N  N  N   8.415  24.046   9.620  -1.142   0.538  -0.057  O6    GYG  21  
GYG  O23   O23   O  0  1  N  N  N   6.937  24.454   7.051  -1.373   3.098  -1.647  O23   GYG  22  
GYG  O24   O24   O  0  1  N  N  N   5.553  23.141   8.686  -2.559   3.176   0.350  O24   GYG  23  
GYG  S02   S02   S  0  1  N  N  N   6.175  24.475   8.349  -1.158   3.189  -0.245  S02   GYG  24  
GYG  H031  H031  H  0  0  N  N  N   6.726  24.851  10.593  -0.367   1.695   1.469  H031  GYG  25  
GYG  H32   H041  H  0  1  N  N  N   8.156  26.532   8.473   1.026   1.582  -1.245  H32   GYG  26  
GYG  H31   H042  H  0  1  N  N  N   6.824  27.057   9.557   1.632   2.406   0.213  H31   GYG  27  
GYG  H4    H051  H  0  1  N  N  N   8.190  26.863  11.486   1.729   0.257   1.416  H4    GYG  28  
GYG  H5    H101  H  0  1  N  N  N  10.436  25.817   9.748   0.765  -0.950  -1.219  H5    GYG  29  
GYG  H111  H132  H  0  0  N  N  N  13.611  27.568  12.666   2.074  -4.844   0.324  H111  GYG  30  
GYG  H113  H133  H  0  0  N  N  N  12.088  27.749  13.601   3.645  -4.470  -0.424  H113  GYG  31  
GYG  H112  H131  H  0  0  N  N  N  12.888  26.145  13.491   3.301  -3.933   1.237  H112  GYG  32  
GYG  H6    H151  H  0  1  N  N  N   8.655  24.289  11.713  -0.616  -0.722   1.494  H6    GYG  33  
GYG  H7    H161  H  0  1  N  N  N  11.044  23.470  11.588  -1.195  -2.793   0.325  H7    GYG  34  
GYG  H8    H181  H  0  1  N  N  N   8.865  21.752  10.264  -3.312  -0.635  -0.091  H8    GYG  35  
GYG  H92   H202  H  0  1  N  N  N  10.152  19.814  11.125  -3.755  -2.820  -1.249  H92   GYG  36  
GYG  H91   H201  H  0  1  N  N  N  11.151  20.796  10.001  -3.594  -3.645   0.320  H91   GYG  37  
GYG  H061  H061  H  0  0  N  N  N   9.445  28.382   9.205   3.137  -0.400  -1.058  H061  GYG  38  
GYG  H081  H081  H  0  0  N  N  N  10.361  30.877  11.690   4.672   1.792   1.915  H081  GYG  39  
GYG  H1    H1    H  0  1  N  N  N   9.650  29.373  13.153   5.473   0.051  -0.970  H1    GYG  40  
GYG  H091  H091  H  0  0  N  N  N   9.036  27.833  12.652   6.105   0.973   0.285  H091  GYG  41  
GYG  HN5   H111  H  0  1  N  N  N  10.243  25.882  12.761   0.992  -2.543   1.218  HN5   GYG  42  
GYG  HO7   H171  H  0  1  N  Y  N  11.534  22.559   9.504  -1.749  -1.102  -1.969  HO7   GYG  43  
GYG  HO8   H191  H  0  1  N  Y  N   8.598  21.072  12.462  -2.759  -2.326   2.202  HO8   GYG  44  
GYG  HO9   H211  H  0  1  N  Y  N  12.246  20.287  11.963  -5.865  -3.083  -0.162  HO9   GYG  45  
GYG  H2    H2    H  0  1  N  N  N   4.611  23.241   8.763  -3.099   3.939   0.100  H2    GYG  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GYG  O23  S02   DOUB  N  N   1  
GYG  O01  S02   DOUB  N  N   2  
GYG  S02  O24   SING  N  N   3  
GYG  S02  C2    SING  N  N   4  
GYG  C3   C2    SING  N  N   5  
GYG  C3   C4    SING  N  N   6  
GYG  O7   C7    SING  N  N   7  
GYG  O6   C2    SING  N  N   8  
GYG  O6   C6    SING  N  N   9  
GYG  N06  C4    SING  N  N  10  
GYG  N06  C07   SING  N  N  11  
GYG  C4   C5    SING  N  N  12  
GYG  O10  C10   DOUB  N  N  13  
GYG  C5   C6    SING  N  N  14  
GYG  C5   N5    SING  N  N  15  
GYG  C6   C7    SING  N  N  16  
GYG  C7   C8    SING  N  N  17  
GYG  N08  C07   DOUB  N  N  18  
GYG  C9   C8    SING  N  N  19  
GYG  C9   O9    SING  N  N  20  
GYG  C8   O8    SING  N  N  21  
GYG  C07  N09   SING  N  N  22  
GYG  C10  N5    SING  N  N  23  
GYG  C10  C11   SING  N  N  24  
GYG  C2   H031  SING  N  N  25  
GYG  C3   H32   SING  N  N  26  
GYG  C3   H31   SING  N  N  27  
GYG  C4   H4    SING  N  N  28  
GYG  C5   H5    SING  N  N  29  
GYG  C11  H111  SING  N  N  30  
GYG  C11  H113  SING  N  N  31  
GYG  C11  H112  SING  N  N  32  
GYG  C6   H6    SING  N  N  33  
GYG  C7   H7    SING  N  N  34  
GYG  C8   H8    SING  N  N  35  
GYG  C9   H92   SING  N  N  36  
GYG  C9   H91   SING  N  N  37  
GYG  N06  H061  SING  N  N  38  
GYG  N08  H081  SING  N  N  39  
GYG  N09  H1    SING  N  N  40  
GYG  N09  H091  SING  N  N  41  
GYG  N5   HN5   SING  N  N  42  
GYG  O7   HO7   SING  N  N  43  
GYG  O8   HO8   SING  N  N  44  
GYG  O9   HO9   SING  N  N  45  
GYG  O24  H2    SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GYG  SMILES            ACDLabs               12.01  "C1(CC(C(C(C(C(O)CO)O)O1)NC(C)=O)NC(\N)=N)S(=O)(=O)O"  
GYG  InChI             InChI                 1.03   "InChI=1S/C11H22N4O8S/c1-4(17)14-8-5(15-11(12)13)2-7(24(20,21)22)23-10(8)9(19)6(18)3-16/h5-10,16,18-19H,2-3H2,1H3,(H,14,17)(H4,12,13,15)(H,20,21,22)/t5-,6+,7+,8+,9+,10+/m0/s1"  
GYG  InChIKey          InChI                 1.03   SMAXKAOIZYKFEF-IHICSVBISA-N  
GYG  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@H](C[C@H](O[C@H]1[C@H](O)[C@H](O)CO)[S](O)(=O)=O)NC(N)=N"  
GYG  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](C[CH](O[CH]1[CH](O)[CH](O)CO)[S](O)(=O)=O)NC(N)=N"  
GYG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "[H]/N=C(/N)\N[C@H]1C[C@H](O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](CO)O)O)S(=O)(=O)O"  
GYG  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(CC(OC1C(C(CO)O)O)S(=O)(=O)O)NC(=N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GYG  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R)-4-(acetylamino)-1,5-anhydro-3-carbamimidamido-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"  
GYG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;(2~{R},4~{S},5~{R},6~{R})-5-acetamido-4-carbamimidamido-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-sulfonic
acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GYG  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GYG  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GYG  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
GYG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GYG  "Create component"          2017-11-30  RCSB  
GYG  "Initial release"           2018-03-07  RCSB  
GYG  "Other modification"        2020-07-03  RCSB  
GYG  "Modify name"               2020-07-17  RCSB  
GYG  "Modify synonyms"           2020-07-17  RCSB  
GYG  "Modify atom id"            2020-07-17  RCSB  
GYG  "Modify component atom id"  2020-07-17  RCSB  
GYG  "Modify leaving atom flag"  2020-07-17  RCSB  
##
