data_IDG
#

_chem_comp.id                                   IDG
_chem_comp.name                                 "2,6-diamino-2,6-dideoxy-beta-L-idopyranose"
_chem_comp.type                                 "L-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H14 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;O-2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPYRANOSE; 2,6-diamino-2,6-dideoxy-beta-L-idose; 2,6-diamino-2,6-dideoxy-L-idose;
2,6-diamino-2,6-dideoxy-idose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        PA4
_chem_comp.formula_weight                       178.186
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    IDG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1QD3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  IDG  "O-2,6-DIAMINO-2,6-DIDEOXY-BETA-L-IDOPYRANOSE"  PDB  ?  
2  IDG  "2,6-diamino-2,6-dideoxy-beta-L-idose"          PDB  ?  
3  IDG  "2,6-diamino-2,6-dideoxy-L-idose"               PDB  ?  
4  IDG  "2,6-diamino-2,6-dideoxy-idose"                 PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IDG  C5    C5    C  0  1  N  N  S   8.531  -6.150  -6.023  -0.185  -0.340   1.096  C5    IDG   1  
IDG  O5    O5    O  0  1  N  N  N   8.984  -6.185  -4.661   1.008   0.198   0.531  O5    IDG   2  
IDG  C1    C1    C  0  1  N  N  S   8.326  -5.195  -3.850   1.215  -0.439  -0.727  C1    IDG   3  
IDG  O1    O1    O  0  1  N  Y  N   8.845  -5.218  -2.504   2.491  -0.061  -1.248  O1    IDG   4  
IDG  C2    C2    C  0  1  N  N  R   6.805  -5.425  -3.840   0.120  -0.015  -1.709  C2    IDG   5  
IDG  N2    N2    N  0  1  N  N  N   6.458  -6.536  -2.973   0.141   1.445  -1.867  N2    IDG   6  
IDG  C3    C3    C  0  1  N  N  R   6.221  -5.635  -5.242  -1.241  -0.454  -1.159  C3    IDG   7  
IDG  O3    O3    O  0  1  N  N  N   6.109  -4.382  -5.898  -1.312  -1.881  -1.139  O3    IDG   8  
IDG  C4    C4    C  0  1  N  N  S   7.071  -6.580  -6.087  -1.393   0.093   0.263  C4    IDG   9  
IDG  O4    O4    O  0  1  N  N  N   6.932  -7.914  -5.612  -1.463   1.520   0.222  O4    IDG  10  
IDG  C6    C6    C  0  1  N  N  N   9.400  -7.045  -6.902  -0.345   0.171   2.529  C6    IDG  11  
IDG  N6    N6    N  0  1  N  N  N  10.806  -6.798  -6.643   0.812  -0.246   3.331  N6    IDG  12  
IDG  H5    H5    H  0  1  N  N  N   8.617  -5.115  -6.378  -0.123  -1.428   1.105  H5    IDG  13  
IDG  H1    H1    H  0  1  N  N  N   8.542  -4.207  -4.285   1.184  -1.521  -0.595  H1    IDG  14  
IDG  HO1   HO1   H  0  1  N  Y  N   8.410  -4.564  -1.968   3.152  -0.349  -0.604  HO1   IDG  15  
IDG  H2    H2    H  0  1  N  N  N   6.323  -4.476  -3.554   0.293  -0.489  -2.675  H2    IDG  16  
IDG  HN21  HN21  H  0  0  N  N  N   7.138  -7.024  -2.462   1.054   1.685  -2.223  HN21  IDG  17  
IDG  HN22  HN22  H  0  0  N  N  N   5.759  -7.180  -3.223  -0.520   1.667  -2.595  HN22  IDG  18  
IDG  H3    H3    H  0  1  N  N  N   5.227  -6.094  -5.126  -2.035  -0.057  -1.791  H3    IDG  19  
IDG  HO3   HO3   H  0  1  N  Y  N   5.416  -4.401  -6.564  -1.199  -2.179  -2.052  HO3   IDG  20  
IDG  H4    H4    H  0  1  N  N  N   6.731  -6.516  -7.130  -2.304  -0.303   0.711  H4    IDG  21  
IDG  HO4   HO4   H  0  1  N  Y  N   7.522  -8.061  -4.863  -2.233   1.746  -0.316  HO4   IDG  22  
IDG  H61   H61   H  0  1  N  N  N   9.145  -8.099  -6.727  -1.255  -0.241   2.963  H61   IDG  23  
IDG  H62   H62   H  0  1  N  N  N   9.156  -6.792  -7.947  -0.407   1.259   2.521  H62   IDG  24  
IDG  HN61  HN61  H  0  0  N  N  N  11.152  -5.889  -6.512   0.664   0.110   4.263  HN61  IDG  25  
IDG  HN62  HN62  H  0  0  N  N  N  11.324  -7.398  -6.063   0.771  -1.252   3.397  HN62  IDG  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IDG  C5  O5    SING  N  N   1  
IDG  C5  C4    SING  N  N   2  
IDG  C5  C6    SING  N  N   3  
IDG  C5  H5    SING  N  N   4  
IDG  O5  C1    SING  N  N   5  
IDG  C1  O1    SING  N  N   6  
IDG  C1  C2    SING  N  N   7  
IDG  C1  H1    SING  N  N   8  
IDG  O1  HO1   SING  N  N   9  
IDG  C2  N2    SING  N  N  10  
IDG  C2  C3    SING  N  N  11  
IDG  C2  H2    SING  N  N  12  
IDG  N2  HN21  SING  N  N  13  
IDG  N2  HN22  SING  N  N  14  
IDG  C3  O3    SING  N  N  15  
IDG  C3  C4    SING  N  N  16  
IDG  C3  H3    SING  N  N  17  
IDG  O3  HO3   SING  N  N  18  
IDG  C4  O4    SING  N  N  19  
IDG  C4  H4    SING  N  N  20  
IDG  O4  HO4   SING  N  N  21  
IDG  C6  N6    SING  N  N  22  
IDG  C6  H61   SING  N  N  23  
IDG  C6  H62   SING  N  N  24  
IDG  N6  HN61  SING  N  N  25  
IDG  N6  HN62  SING  N  N  26  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IDG  SMILES            ACDLabs               10.04  "OC1C(O)C(OC(O)C1N)CN"  
IDG  SMILES_CANONICAL  CACTVS                3.341  "NC[C@@H]1O[C@H](O)[C@H](N)[C@@H](O)[C@@H]1O"  
IDG  SMILES            CACTVS                3.341  "NC[CH]1O[CH](O)[CH](N)[CH](O)[CH]1O"  
IDG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)N)O)O)N"  
IDG  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)O)N)O)O)N"  
IDG  InChI             InChI                 1.03   "InChI=1S/C6H14N2O4/c7-1-2-4(9)5(10)3(8)6(11)12-2/h2-6,9-11H,1,7-8H2/t2-,3+,4+,5+,6-/m0/s1"  
IDG  InChIKey          InChI                 1.03   SQTHUUHOUPJYLK-BSQWINAVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IDG  "SYSTEMATIC NAME"            ACDLabs               10.04  "2,6-diamino-2,6-dideoxy-beta-L-idopyranose"  
IDG  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2S,3R,4R,5S,6S)-3-amino-6-(aminomethyl)oxane-2,4,5-triol"  
IDG  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-L-IdopN6N  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
IDG  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
IDG  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
IDG  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
IDG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IDG  "Create component"          1999-07-08  RCSB  
IDG  "Modify descriptor"         2011-06-04  RCSB  
IDG  "Other modification"        2020-07-03  RCSB  
IDG  "Modify name"               2020-07-17  RCSB  
IDG  "Modify synonyms"           2020-07-17  RCSB  
IDG  "Modify linking type"       2020-07-17  RCSB  
IDG  "Modify leaving atom flag"  2020-07-17  RCSB  
##
