data_IVG
# 
_chem_comp.id                                    IVG 
_chem_comp.name                                  "D-Xylose, 4-O-beta-D-xylopyranosyl-" 
_chem_comp.type                                  saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C10 H18 O9" 
_chem_comp.mon_nstd_parent_comp_id               XYP 
_chem_comp.pdbx_synonyms                         Xylobiose 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-14 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        282.245 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IVG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZB3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IVG O8  O1  O 0 1 N N N -27.709 33.028 34.545 -3.319 -0.810 -0.434 O8  IVG 1  
IVG O4  O2  O 0 1 N N N -22.960 37.746 37.204 4.719  1.076  0.896  O4  IVG 2  
IVG O1  O3  O 0 1 N N N -25.224 34.208 33.619 -0.477 -0.575 -0.077 O1  IVG 3  
IVG O6  O4  O 0 1 N N N -26.763 33.862 36.990 -1.570 1.457  -0.675 O6  IVG 4  
IVG O5  O5  O 0 1 N N N -24.103 34.620 35.639 1.090  0.642  1.152  O5  IVG 5  
IVG O9  O6  O 0 1 N N N -25.367 30.602 32.876 -2.209 -2.865 0.048  O9  IVG 6  
IVG O3  O7  O 0 1 N N N -24.184 38.672 34.782 4.060  -0.039 -1.654 O3  IVG 7  
IVG O7  O8  O 0 1 N N N -26.134 30.781 37.876 -3.941 2.430  -1.142 O7  IVG 8  
IVG O2  O9  O 0 1 N N N -23.994 36.809 32.640 1.627  -1.540 -1.742 O2  IVG 9  
IVG C4  C1  C 0 1 N N R -23.715 36.886 36.342 3.372  0.977  0.431  C4  IVG 10 
IVG C5  C2  C 0 1 N N N -23.203 35.459 36.388 2.430  0.798  1.624  C5  IVG 11 
IVG C1  C3  C 0 1 N N S -24.135 34.919 34.207 0.895  -0.500 0.315  C1  IVG 12 
IVG C9  C4  C 0 1 N N R -25.345 32.771 33.967 -1.379 -0.808 1.007  C9  IVG 13 
IVG C10 C5  C 0 1 N N N -25.469 32.008 32.653 -1.567 -2.314 1.199  C10 IVG 14 
IVG C6  C6  C 0 1 N N R -26.487 32.384 34.914 -2.730 -0.161 0.695  C6  IVG 15 
IVG C7  C7  C 0 1 N N R -26.251 32.623 36.425 -2.524 1.322  0.380  C7  IVG 16 
IVG C8  C8  C 0 1 N N N -26.844 31.430 37.176 -3.835 1.931  -0.047 C8  IVG 17 
IVG C2  C9  C 0 1 N N R -24.376 36.424 33.954 1.776  -0.373 -0.931 C2  IVG 18 
IVG C3  C10 C 0 1 N N S -23.630 37.359 34.901 3.239  -0.232 -0.501 C3  IVG 19 
IVG H5  H1  H 0 1 N N N -28.397 32.771 35.147 -2.786 -0.761 -1.239 H5  IVG 20 
IVG HO4 H2  H 0 1 N N N -23.025 37.434 38.099 4.875  1.818  1.496  HO4 IVG 21 
IVG H11 H3  H 0 1 N N N -26.559 33.896 37.917 -1.831 1.024  -1.500 H11 IVG 22 
IVG H13 H4  H 0 1 N N N -25.446 30.143 32.048 -2.361 -3.818 0.100  H13 IVG 23 
IVG HO3 H5  H 0 1 N N N -23.727 39.264 35.368 5.001  0.058  -1.455 HO3 IVG 24 
IVG HO2 H6  H 0 1 N N N -24.156 37.738 32.522 0.722  -1.694 -2.047 HO2 IVG 25 
IVG H52 H7  H 0 1 N N N -24.771 36.889 36.649 3.106  1.886  -0.110 H52 IVG 26 
IVG H51 H8  H 0 1 N N N -23.159 35.115 37.432 2.488  1.675  2.268  H51 IVG 27 
IVG H9  H9  H 0 1 N N N -22.198 35.412 35.944 2.722  -0.088 2.188  H9  IVG 28 
IVG H1  H10 H 0 1 N N N -23.184 34.626 33.739 1.167  -1.402 0.862  H1  IVG 29 
IVG H6  H11 H 0 1 N N N -24.404 32.457 34.443 -0.970 -0.373 1.919  H6  IVG 30 
IVG H8  H12 H 0 1 N N N -24.664 32.325 31.974 -2.183 -2.494 2.080  H8  IVG 31 
IVG H7  H13 H 0 1 N N N -26.444 32.232 32.196 -0.594 -2.787 1.334  H7  IVG 32 
IVG H10 H14 H 0 1 N N N -26.634 31.300 34.795 -3.389 -0.262 1.557  H10 IVG 33 
IVG H12 H15 H 0 1 N N N -25.163 32.599 36.587 -2.158 1.835  1.269  H12 IVG 34 
IVG H14 H16 H 0 1 N N N -27.890 31.181 37.073 -4.679 1.922  0.626  H14 IVG 35 
IVG H2  H17 H 0 1 N N N -25.453 36.610 34.082 1.476  0.507  -1.500 H2  IVG 36 
IVG H3  H18 H 0 1 N N N -22.571 37.378 34.604 3.553  -1.134 0.024  H3  IVG 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IVG O2  C2  SING N N 1  
IVG C10 O9  SING N N 2  
IVG C10 C9  SING N N 3  
IVG O1  C9  SING N N 4  
IVG O1  C1  SING N N 5  
IVG C2  C1  SING N N 6  
IVG C2  C3  SING N N 7  
IVG C9  C6  SING N N 8  
IVG C1  O5  SING N N 9  
IVG O8  C6  SING N N 10 
IVG O3  C3  SING N N 11 
IVG C3  C4  SING N N 12 
IVG C6  C7  SING N N 13 
IVG O5  C5  SING N N 14 
IVG C4  C5  SING N N 15 
IVG C4  O4  SING N N 16 
IVG C7  O6  SING N N 17 
IVG C7  C8  SING N N 18 
IVG C8  O7  DOUB N N 19 
IVG O8  H5  SING N N 20 
IVG O4  HO4 SING N N 21 
IVG O6  H11 SING N N 22 
IVG O9  H13 SING N N 23 
IVG O3  HO3 SING N N 24 
IVG O2  HO2 SING N N 25 
IVG C4  H52 SING N N 26 
IVG C5  H51 SING N N 27 
IVG C5  H9  SING N N 28 
IVG C1  H1  SING N N 29 
IVG C9  H6  SING N N 30 
IVG C10 H8  SING N N 31 
IVG C10 H7  SING N N 32 
IVG C6  H10 SING N N 33 
IVG C7  H12 SING N N 34 
IVG C8  H14 SING N N 35 
IVG C2  H2  SING N N 36 
IVG C3  H3  SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IVG InChI            InChI                1.06  "InChI=1S/C10H18O9/c11-1-4(13)7(15)6(2-12)19-10-9(17)8(16)5(14)3-18-10/h1,4-10,12-17H,2-3H2/t4-,5+,6+,7+,8-,9+,10-/m0/s1" 
IVG InChIKey         InChI                1.06  SQNRKWHRVIAKLP-RSZZQXBVSA-N                                                                                               
IVG SMILES_CANONICAL CACTVS               3.385 "OC[C@@H](O[C@@H]1OC[C@@H](O)[C@H](O)[C@H]1O)[C@H](O)[C@@H](O)C=O"                                                        
IVG SMILES           CACTVS               3.385 "OC[CH](O[CH]1OC[CH](O)[CH](O)[CH]1O)[CH](O)[CH](O)C=O"                                                                   
IVG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@H](CO)[C@@H]([C@H](C=O)O)O)O)O)O"                                                     
IVG SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(O1)OC(CO)C(C(C=O)O)O)O)O)O"                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           IVG 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{R})-2,3,5-tris(oxidanyl)-4-[(2~{S},3~{R},4~{S},5~{R})-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-pentanal" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      IVG 
_pdbx_chem_comp_synonyms.name         Xylobiose 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IVG "Create component"  2022-04-14 PDBE 
IVG "Modify descriptor" 2022-08-22 RCSB 
IVG "Initial release"   2023-04-05 RCSB 
# 
