data_R7G
# 
_chem_comp.id                                    R7G 
_chem_comp.name                                  
;1-[(2S)-2-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-3-oxopropyl]-4-{[2-(5,6
-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl]carbamoyl}-2,5-dihydro-1H-pyrazole-3-carboxylic acid
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H28 N8 O12 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         YU253434 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-02-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        688.623 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R7G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6VOT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R7G O9  O1  O 0 1 N N N N N N -3.613 40.049 17.053 -6.449  2.002  1.025  O9  R7G 1  
R7G C20 C1  C 0 1 N N N N N N -3.398 40.642 18.114 -7.133  1.255  0.354  C20 R7G 2  
R7G C22 C2  C 0 1 Y N N N N N -4.346 41.140 18.921 -8.601  1.120  0.441  C22 R7G 3  
R7G C27 C3  C 0 1 Y N N N N N -5.692 41.156 18.824 -9.581  1.718  1.216  C27 R7G 4  
R7G C26 C4  C 0 1 Y N N N N N -6.460 41.761 19.824 -10.912 1.355  1.046  C26 R7G 5  
R7G O12 O2  O 0 1 N N N N N N -7.821 41.806 19.809 -11.875 1.940  1.804  O12 R7G 6  
R7G C25 C5  C 0 1 Y N N N N N -5.813 42.342 20.910 -11.263 0.394  0.100  C25 R7G 7  
R7G O11 O3  O 0 1 N N N N N N -6.611 42.918 21.863 -12.566 0.047  -0.059 O11 R7G 8  
R7G C24 C6  C 0 1 Y N N N N N -4.408 42.299 20.962 -10.285 -0.210 -0.681 C24 R7G 9  
R7G C23 C7  C 0 1 Y N N N N N -3.707 41.703 19.969 -8.956  0.146  -0.517 C23 R7G 10 
R7G C21 C8  C 0 1 N N N N N N -2.388 41.523 19.753 -7.692  -0.275 -1.152 C21 R7G 11 
R7G O10 O4  O 0 1 N N N N N N -1.494 41.909 20.510 -7.583  -1.105 -2.032 O10 R7G 12 
R7G N8  N1  N 0 1 N N N N N N -2.183 40.871 18.604 -6.681  0.417  -0.596 N8  R7G 13 
R7G C19 C9  C 0 1 N N N N N N -0.955 40.401 17.941 -5.273  0.274  -0.973 C19 R7G 14 
R7G C18 C10 C 0 1 N N N N N N -0.912 38.888 18.256 -4.623  -0.813 -0.114 C18 R7G 15 
R7G N7  N2  N 0 1 N N N N N N 0.246  38.234 17.588 -3.214  -0.956 -0.491 N7  R7G 16 
R7G C17 C11 C 0 1 N N N N N N 1.483  38.524 17.995 -2.437  -1.860 0.137  C17 R7G 17 
R7G O8  O5  O 0 1 N N N N N N 1.745  39.558 18.601 -2.905  -2.558 1.017  O8  R7G 18 
R7G C3  C12 C 0 1 N N N N N N 2.499  37.695 17.841 -1.028  -2.003 -0.240 C3  R7G 19 
R7G C2  C13 C 0 1 N N N N N N 3.684  38.171 18.350 -0.318  -1.307 -1.382 C2  R7G 20 
R7G C1  C14 C 0 1 N N N N N N 2.759  36.599 17.111 -0.100  -2.780 0.367  C1  R7G 21 
R7G C5  C15 C 0 1 N N N N N N 1.872  35.657 16.759 -0.367  -3.640 1.544  C5  R7G 22 
R7G O2  O6  O 0 1 N N N N N N 1.403  35.592 15.604 -1.500  -3.763 1.962  O2  R7G 23 
R7G O1  O7  O 0 1 N N N N N N 1.558  34.784 17.593 0.648   -4.285 2.151  O1  R7G 24 
R7G N1  N3  N 0 1 N N N N N N 3.946  36.171 17.476 1.118   -2.670 -0.251 N1  R7G 25 
R7G N2  N4  N 0 1 N N N N N N 4.639  37.316 17.672 1.068   -1.807 -1.307 N2  R7G 26 
R7G C4  C16 C 0 1 N N N N N N 5.777  37.073 18.556 2.017   -0.701 -1.127 C4  R7G 27 
R7G C6  C17 C 0 1 N N S N N N 6.868  36.323 17.767 3.446   -1.250 -1.120 C6  R7G 28 
R7G C7  C18 C 0 1 N N N N N N 6.418  34.919 17.291 3.770   -1.822 -2.476 C7  R7G 29 
R7G O3  O8  O 0 1 N N N N N N 5.855  34.716 16.205 4.690   -1.372 -3.117 O3  R7G 30 
R7G N3  N5  N 0 1 N N N N N N 7.412  37.028 16.557 4.383   -0.168 -0.810 N3  R7G 31 
R7G C8  C19 C 0 1 N N N N N N 8.557  37.717 16.667 5.612   -0.456 -0.337 C8  R7G 32 
R7G O4  O9  O 0 1 N N N N N N 9.147  37.860 17.739 5.979   -1.612 -0.265 O4  R7G 33 
R7G C9  C20 C 0 1 N N N N N N 9.171  38.259 15.356 6.515   0.637  0.093  C9  R7G 34 
R7G N4  N6  N 0 1 N N N N N N 8.364  39.093 14.674 6.075   1.862  0.151  N4  R7G 35 
R7G O5  O10 O 0 1 N N N N N N 7.728  40.346 15.592 4.695   2.127  -0.025 O5  R7G 36 
R7G C10 C21 C 0 1 N N N N N N 6.823  41.299 14.942 4.369   3.518  -0.049 C10 R7G 37 
R7G C11 C22 C 0 1 N N N N N N 5.887  40.542 13.988 4.896   4.187  1.222  C11 R7G 38 
R7G C12 C23 C 0 1 N N N N N N 5.998  42.024 16.040 5.011   4.171  -1.274 C12 R7G 39 
R7G C13 C24 C 0 1 N N N N N N 7.597  42.396 14.136 2.872   3.681  -0.119 C13 R7G 40 
R7G O7  O11 O 0 1 N N N N N N 6.906  43.233 13.499 2.158   2.707  -0.146 O7  R7G 41 
R7G O6  O12 O 0 1 N N N N N N 8.852  42.390 14.185 2.332   4.910  -0.152 O6  R7G 42 
R7G C14 C25 C 0 1 Y N N N N N 10.009 37.411 14.690 7.917   0.337  0.458  C14 R7G 43 
R7G N5  N7  N 0 1 Y N N N N N 10.627 37.728 13.536 8.420   -0.897 0.411  N5  R7G 44 
R7G C15 C26 C 0 1 Y N N N N N 11.409 36.741 13.050 9.663   -1.036 0.748  C15 R7G 45 
R7G N6  N8  N 0 1 N N N N N N 12.111 36.808 11.940 10.358  -2.234 0.762  N6  R7G 46 
R7G S1  S1  S 0 1 Y N N N N N 11.410 35.409 14.020 10.334  0.531  1.186  S1  R7G 47 
R7G C16 C27 C 0 1 Y N N N N N 10.311 36.156 15.117 8.780   1.293  0.856  C16 R7G 48 
R7G H1  H1  H 0 1 N N N N N N -6.177 40.701 17.973 -9.313  2.463  1.951  H1  R7G 49 
R7G H2  H2  H 0 1 N N N N N N -8.132 42.263 20.582 -12.248 2.743  1.415  H2  R7G 50 
R7G H3  H3  H 0 1 N N N N N N -6.069 43.281 22.553 -13.038 0.579  -0.714 H3  R7G 51 
R7G H4  H4  H 0 1 N N N N N N -3.887 42.743 21.797 -10.560 -0.955 -1.413 H4  R7G 52 
R7G H5  H5  H 0 1 N N N N N N -0.070 40.911 18.351 -5.205  -0.005 -2.024 H5  R7G 53 
R7G H6  H6  H 0 1 N N N N N N -1.007 40.573 16.856 -4.756  1.220  -0.814 H6  R7G 54 
R7G H7  H7  H 0 1 N N N N N N -1.842 38.421 17.901 -4.691  -0.534 0.938  H7  R7G 55 
R7G H8  H8  H 0 1 N N N N N N -0.824 38.750 19.344 -5.139  -1.759 -0.273 H8  R7G 56 
R7G H9  H9  H 0 1 N N N N N N 0.099  37.584 16.842 -2.841  -0.400 -1.192 H9  R7G 57 
R7G H11 H11 H 0 1 N N N N N N 3.734  38.046 19.442 -0.771  -1.581 -2.335 H11 R7G 58 
R7G H12 H12 H 0 1 N N N N N N 3.837  39.230 18.095 -0.344  -0.226 -1.244 H12 R7G 59 
R7G H14 H14 H 0 1 N N N N N N 0.967  34.159 17.190 0.416   -4.892 2.868  H14 R7G 60 
R7G H15 H15 H 0 1 N N N N N N 3.891  35.636 18.319 1.916   -3.144 0.029  H15 R7G 61 
R7G H16 H16 H 0 1 N N N N N N 6.176  38.032 18.917 1.905   0.010  -1.946 H16 R7G 62 
R7G H17 H17 H 0 1 N N N N N N 5.456  36.463 19.413 1.816   -0.199 -0.181 H17 R7G 63 
R7G H18 H18 H 0 1 N N N N N N 7.709  36.167 18.459 3.531   -2.032 -0.366 H18 R7G 64 
R7G H19 H19 H 0 1 N N N N N N 6.604  34.074 17.938 3.180   -2.634 -2.875 H19 R7G 65 
R7G H20 H20 H 0 1 N N N N N N 6.928  36.984 15.683 4.120   0.756  -0.944 H20 R7G 66 
R7G H21 H21 H 0 1 N N N N N N 5.339  39.769 14.547 5.964   3.994  1.318  H21 R7G 67 
R7G H22 H22 H 0 1 N N N N N N 5.171  41.247 13.541 4.725   5.262  1.164  H22 R7G 68 
R7G H23 H23 H 0 1 N N N N N N 6.480  40.068 13.192 4.374   3.782  2.089  H23 R7G 69 
R7G H24 H24 H 0 1 N N N N N N 6.679  42.562 16.716 4.636   3.694  -2.179 H24 R7G 70 
R7G H25 H25 H 0 1 N N N N N N 5.309  42.740 15.568 4.763   5.232  -1.292 H25 R7G 71 
R7G H26 H26 H 0 1 N N N N N N 5.421  41.284 16.614 6.094   4.052  -1.223 H26 R7G 72 
R7G H27 H27 H 0 1 N N N N N N 9.193  43.111 13.669 1.368   4.965  -0.197 H27 R7G 73 
R7G H28 H28 H 0 1 N N N N N N 11.976 37.702 11.513 9.912   -3.056 0.504  H28 R7G 74 
R7G H29 H29 H 0 1 N N N N N N 13.080 36.683 12.151 11.290  -2.251 1.028  H29 R7G 75 
R7G H30 H30 H 0 1 N N N N N N 9.920  35.695 16.012 8.558   2.346  0.951  H30 R7G 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R7G N6  C15 SING N N 1  
R7G C15 N5  DOUB Y N 2  
R7G C15 S1  SING Y N 3  
R7G O7  C13 DOUB N N 4  
R7G N5  C14 SING Y N 5  
R7G C11 C10 SING N N 6  
R7G S1  C16 SING Y N 7  
R7G C13 O6  SING N N 8  
R7G C13 C10 SING N N 9  
R7G N4  C9  DOUB N Z 10 
R7G N4  O5  SING N N 11 
R7G C14 C16 DOUB Y N 12 
R7G C14 C9  SING N N 13 
R7G C10 O5  SING N N 14 
R7G C10 C12 SING N N 15 
R7G C9  C8  SING N N 16 
R7G O2  C5  DOUB N N 17 
R7G O3  C7  DOUB N N 18 
R7G N3  C8  SING N N 19 
R7G N3  C6  SING N N 20 
R7G C8  O4  DOUB N N 21 
R7G C5  C1  SING N N 22 
R7G C5  O1  SING N N 23 
R7G O9  C20 DOUB N N 24 
R7G C1  N1  SING N N 25 
R7G C1  C3  DOUB N N 26 
R7G C7  C6  SING N N 27 
R7G N1  N2  SING N N 28 
R7G N7  C17 SING N N 29 
R7G N7  C18 SING N N 30 
R7G N2  C2  SING N N 31 
R7G N2  C4  SING N N 32 
R7G C6  C4  SING N N 33 
R7G C3  C17 SING N N 34 
R7G C3  C2  SING N N 35 
R7G C19 C18 SING N N 36 
R7G C19 N8  SING N N 37 
R7G C17 O8  DOUB N N 38 
R7G C20 N8  SING N N 39 
R7G C20 C22 SING N N 40 
R7G N8  C21 SING N N 41 
R7G C27 C22 DOUB Y N 42 
R7G C27 C26 SING Y N 43 
R7G C22 C23 SING Y N 44 
R7G C21 C23 SING N N 45 
R7G C21 O10 DOUB N N 46 
R7G O12 C26 SING N N 47 
R7G C26 C25 DOUB Y N 48 
R7G C23 C24 DOUB Y N 49 
R7G C25 C24 SING Y N 50 
R7G C25 O11 SING N N 51 
R7G C27 H1  SING N N 52 
R7G O12 H2  SING N N 53 
R7G O11 H3  SING N N 54 
R7G C24 H4  SING N N 55 
R7G C19 H5  SING N N 56 
R7G C19 H6  SING N N 57 
R7G C18 H7  SING N N 58 
R7G C18 H8  SING N N 59 
R7G N7  H9  SING N N 60 
R7G C2  H11 SING N N 61 
R7G C2  H12 SING N N 62 
R7G O1  H14 SING N N 63 
R7G N1  H15 SING N N 64 
R7G C4  H16 SING N N 65 
R7G C4  H17 SING N N 66 
R7G C6  H18 SING N N 67 
R7G C7  H19 SING N N 68 
R7G N3  H20 SING N N 69 
R7G C11 H21 SING N N 70 
R7G C11 H22 SING N N 71 
R7G C11 H23 SING N N 72 
R7G C12 H24 SING N N 73 
R7G C12 H25 SING N N 74 
R7G C12 H26 SING N N 75 
R7G O6  H27 SING N N 76 
R7G N6  H28 SING N N 77 
R7G N6  H29 SING N N 78 
R7G C16 H30 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R7G SMILES           ACDLabs              12.01 "O=C1N(C(c2c1cc(c(c2)O)O)=O)CCNC(=O)C=3CN(NC=3C(O)=O)CC(C=O)NC(=O)\C(=N/OC(C)(C)C(O)=O)c4csc(n4)N"                                                                                                                                                                                
R7G InChI            InChI                1.03  "InChI=1S/C27H28N8O12S/c1-27(2,25(45)46)47-33-19(15-10-48-26(28)31-15)21(40)30-11(9-36)7-34-8-14(18(32-34)24(43)44)20(39)29-3-4-35-22(41)12-5-16(37)17(38)6-13(12)23(35)42/h5-6,9-11,32,37-38H,3-4,7-8H2,1-2H3,(H2,28,31)(H,29,39)(H,30,40)(H,43,44)(H,45,46)/b33-19-/t11-/m0/s1" 
R7G InChIKey         InChI                1.03  AUDGPVZSFLGMAE-ZJIUGIBFSA-N                                                                                                                                                                                                                                                       
R7G SMILES_CANONICAL CACTVS               3.385 "CC(C)(O\N=C(/C(=O)N[C@@H](CN1CC(=C(N1)C(O)=O)C(=O)NCCN2C(=O)c3cc(O)c(O)cc3C2=O)C=O)c4csc(N)n4)C(O)=O"                                                                                                                                                                            
R7G SMILES           CACTVS               3.385 "CC(C)(ON=C(C(=O)N[CH](CN1CC(=C(N1)C(O)=O)C(=O)NCCN2C(=O)c3cc(O)c(O)cc3C2=O)C=O)c4csc(N)n4)C(O)=O"                                                                                                                                                                                
R7G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)O/N=C(/c1csc(n1)N)\C(=O)N[C@@H](CN2CC(=C(N2)C(=O)O)C(=O)NCCN3C(=O)c4cc(c(cc4C3=O)O)O)C=O"                                                                                                                                                                           
R7G SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)O)ON=C(c1csc(n1)N)C(=O)NC(CN2CC(=C(N2)C(=O)O)C(=O)NCCN3C(=O)c4cc(c(cc4C3=O)O)O)C=O"                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
R7G "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(2S)-2-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-3-oxopropyl]-4-{[2-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl]carbamoyl}-2,5-dihydro-1H-pyrazole-3-carboxylic acid"                                        
R7G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2~{S})-2-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-3-oxidanylidene-propyl]-4-[2-[5,6-bis(oxidanyl)-1,3-bis(oxidanylidene)isoindol-2-yl]ethylcarbamoyl]-1,3-dihydropyrazole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R7G "Create component" 2020-02-05 RCSB 
R7G "Initial release"  2020-05-13 RCSB 
R7G "Modify synonyms"  2020-06-05 PDBE 
R7G "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      R7G 
_pdbx_chem_comp_synonyms.name         YU253434 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            R7G 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
