data_U2G
#

_chem_comp.id                                   U2G
_chem_comp.name                                 "URIDYLYL-2'-5'-PHOSPHO-GUANOSINE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H24 N7 O13 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PHOSPHORIC ACID-2'-[2'-DEOXY-URIDINE]ESTER-5'-GUANOSINE ESTER"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       589.407
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U2G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       11BG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U2G  N1G     N1G   N  0  1  N  N  N   1.715  34.045  70.785  -1.306   1.293   8.210  N1G     U2G   1  
U2G  C2G     C2G   C  0  1  N  N  N   1.155  34.999  69.967   0.028   1.230   7.938  C2G     U2G   2  
U2G  N2G     N2G   N  0  1  N  N  N   0.845  36.170  70.531   0.924   1.576   8.919  N2G     U2G   3  
U2G  N3G     N3G   N  0  1  N  N  N   0.918  34.815  68.684   0.481   0.843   6.767  N3G     U2G   4  
U2G  C4G     C4G   C  0  1  Y  N  N   1.307  33.589  68.269  -0.355   0.497   5.782  C4G     U2G   5  
U2G  C5G     C5G   C  0  1  Y  N  N   1.881  32.573  68.993  -1.737   0.546   5.996  C5G     U2G   6  
U2G  C6G     C6G   C  0  1  N  N  N   2.111  32.770  70.371  -2.211   0.965   7.262  C6G     U2G   7  
U2G  O6G     O6G   O  0  1  N  N  N   2.580  31.971  71.188  -3.407   1.023   7.493  O6G     U2G   8  
U2G  N7G     N7G   N  0  1  Y  N  N   2.120  31.468  68.187  -2.337   0.149   4.848  N7G     U2G   9  
U2G  C8G     C8G   C  0  1  Y  N  N   1.687  31.827  67.009  -1.426  -0.133   3.962  C8G     U2G  10  
U2G  N9G     N9G   N  0  1  Y  N  N   1.181  33.105  66.999  -0.186   0.066   4.494  N9G     U2G  11  
U2G  C1B     C1*G  C  0  1  N  N  R   0.594  33.858  65.905   1.093  -0.141   3.811  C1B     U2G  12  
U2G  C2B     C2*G  C  0  1  N  N  R   1.000  33.557  64.457   1.567  -1.600   3.990  C2B     U2G  13  
U2G  O2B     O2*G  O  0  1  N  N  N   1.757  34.626  63.947   2.529  -1.695   5.043  O2B     U2G  14  
U2G  C3B     C3*G  C  0  1  N  N  S  -0.356  33.412  63.751   2.215  -1.952   2.630  C3B     U2G  15  
U2G  O3B     O3*G  O  0  1  N  N  N  -0.459  34.273  62.619   3.597  -2.272   2.801  O3B     U2G  16  
U2G  C4B     C4*G  C  0  1  N  N  R  -1.400  33.887  64.746   2.058  -0.663   1.794  C4B     U2G  17  
U2G  O4B     O4*G  O  0  1  N  N  N  -0.806  33.814  66.046   0.934   0.025   2.385  O4B     U2G  18  
U2G  C5B     C5*G  C  0  1  N  N  N  -2.657  33.059  64.676   1.764  -1.005   0.332  C5B     U2G  19  
U2G  O5B     O5*G  O  0  1  N  N  N  -3.267  32.931  65.978   1.552   0.199  -0.405  O5B     U2G  20  
U2G  P       P     P  0  1  N  N  S  -4.462  31.908  66.173   1.250  -0.234  -1.926  P       U2G  21  
U2G  O1P     O1P   O  0  1  N  N  N  -4.887  31.332  64.874   0.045  -1.093  -1.964  O1P     U2G  22  
U2G  O2P     O2P   O  0  1  N  N  N  -5.447  32.598  67.031   2.508  -1.048  -2.512  O2P     U2G  23  
U2G  O5D     O5*U  O  0  1  N  N  N  -1.060  31.785  71.178   0.557   1.249  -8.745  O5D     U2G  24  
U2G  C5D     C5*U  C  0  1  N  N  N  -0.762  30.406  70.858   1.380   0.928  -7.621  C5D     U2G  25  
U2G  C4D     C4*U  C  0  1  N  N  R  -1.759  29.898  69.848   0.835   1.627  -6.374  C4D     U2G  26  
U2G  O4D     O4*U  O  0  1  N  N  N  -3.082  29.904  70.418  -0.491   1.156  -6.086  O4D     U2G  27  
U2G  C3D     C3*U  C  0  1  N  N  R  -1.835  30.794  68.620   1.716   1.288  -5.156  C3D     U2G  28  
U2G  O3D     O3*U  O  0  1  N  N  N  -1.108  30.187  67.555   2.284   2.475  -4.600  O3D     U2G  29  
U2G  C2D     C2*U  C  0  1  N  N  R  -3.330  30.966  68.322   0.738   0.633  -4.151  C2D     U2G  30  
U2G  O2D     O2*U  O  0  1  N  N  N  -3.895  30.691  67.071   0.999   1.081  -2.819  O2D     U2G  31  
U2G  C1D     C1*U  C  0  1  N  N  R  -3.992  30.073  69.373  -0.635   1.151  -4.649  C1D     U2G  32  
U2G  N1U     N1U   N  0  1  N  N  N  -5.295  30.502  69.890  -1.711   0.245  -4.242  N1U     U2G  33  
U2G  C2U     C2U   C  0  1  N  N  N  -6.391  29.716  69.538  -1.653  -1.055  -4.583  C2U     U2G  34  
U2G  O2U     O2U   O  0  1  N  N  N  -6.287  28.708  68.851  -0.704  -1.464  -5.222  O2U     U2G  35  
U2G  N3U     N3U   N  0  1  N  N  N  -7.604  30.156  70.014  -2.626  -1.910  -4.218  N3U     U2G  36  
U2G  C4U     C4U   C  0  1  N  N  N  -7.835  31.286  70.780  -3.686  -1.472  -3.509  C4U     U2G  37  
U2G  O4U     O4U   O  0  1  N  N  N  -8.998  31.622  71.023  -4.569  -2.244  -3.182  O4U     U2G  38  
U2G  C5U     C5U   C  0  1  N  N  N  -6.649  32.041  71.114  -3.762  -0.105  -3.147  C5U     U2G  39  
U2G  C6U     C6U   C  0  1  N  N  N  -5.447  31.629  70.670  -2.770   0.729  -3.522  C6U     U2G  40  
U2G  H1G     H1G   H  0  1  N  N  N   1.845  34.300  71.764  -1.607   1.583   9.085  H1G     U2G  41  
U2G  H2G1    1H2G  H  0  0  N  N  N   0.429  36.877  69.924   1.877   1.532   8.742  H2G1    U2G  42  
U2G  H2G2    2H2G  H  0  0  N  N  N   1.669  36.556  70.991   0.604   1.867   9.787  H2G2    U2G  43  
U2G  H8G     H8G   H  0  1  N  N  N   1.741  31.145  66.143  -1.623  -0.475   2.957  H8G     U2G  44  
U2G  "H1G'"  *H1G  H  0  0  N  N  N   1.037  34.873  66.028   1.843   0.551   4.193  "H1G'"  U2G  45  
U2G  "H2G'"  *H2G  H  0  0  N  N  N   1.639  32.652  64.329   0.718  -2.254   4.189  "H2G'"  U2G  46  
U2G  HOG2    2HOG  H  0  0  N  N  N   2.008  34.439  63.050   2.830  -2.614   5.064  HOG2    U2G  47  
U2G  "H3G'"  *H3G  H  0  0  N  N  N  -0.484  32.356  63.415   1.688  -2.780   2.157  "H3G'"  U2G  48  
U2G  HOG3    3HOG  H  0  0  N  N  N  -1.297  34.183  62.182   3.633  -3.083   3.328  HOG3    U2G  49  
U2G  "H4G'"  *H4G  H  0  0  N  N  N  -1.707  34.932  64.509   2.958  -0.052   1.866  "H4G'"  U2G  50  
U2G  H5G1    1H5G  H  0  0  N  N  N  -3.374  33.463  63.924   2.611  -1.546  -0.090  H5G1    U2G  51  
U2G  H5G2    2H5G  H  0  0  N  N  N  -2.467  32.063  64.211   0.871  -1.627   0.277  H5G2    U2G  52  
U2G  HOP2    2HOP  H  0  0  N  N  N  -6.163  31.984  67.147   3.270  -0.454  -2.469  HOP2    U2G  53  
U2G  HOU5    5HOU  H  0  0  N  N  N  -0.431  32.105  71.814   0.934   0.790  -9.507  HOU5    U2G  54  
U2G  H5U1    1H5U  H  0  0  N  N  N   0.290  30.270  70.516   2.399   1.264  -7.810  H5U1    U2G  55  
U2G  H5U2    2H5U  H  0  0  N  N  N  -0.718  29.762  71.767   1.376  -0.149  -7.464  H5U2    U2G  56  
U2G  "H4U'"  *H4U  H  0  0  N  N  N  -1.421  28.874  69.563   0.820   2.706  -6.531  "H4U'"  U2G  57  
U2G  "H3U'"  *H3U  H  0  0  N  N  N  -1.373  31.798  68.769   2.501   0.586  -5.437  "H3U'"  U2G  58  
U2G  HOU3    3HOU  H  0  0  N  N  N  -1.155  30.746  66.788   2.883   2.838  -5.267  HOU3    U2G  59  
U2G  "H2U'"  *H2U  H  0  0  N  N  N  -3.500  32.067  68.337   0.788  -0.453  -4.210  "H2U'"  U2G  60  
U2G  "H1U'"  *H1U  H  0  0  N  N  N  -4.239  29.119  68.850  -0.822   2.158  -4.278  "H1U'"  U2G  61  
U2G  H3U     H3U   H  0  1  N  N  N  -8.415  29.586  69.774  -2.566  -2.845  -4.469  H3U     U2G  62  
U2G  H5U     H5U   H  0  1  N  N  N  -6.661  32.958  71.725  -4.603   0.264  -2.579  H5U     U2G  63  
U2G  H6U     H6U   H  0  1  N  N  N  -4.565  32.229  70.952  -2.811   1.775  -3.256  H6U     U2G  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U2G  N1G  C2G     SING  N  N   1  
U2G  N1G  C6G     SING  N  N   2  
U2G  N1G  H1G     SING  N  N   3  
U2G  C2G  N2G     SING  N  N   4  
U2G  C2G  N3G     DOUB  N  N   5  
U2G  N2G  H2G1    SING  N  N   6  
U2G  N2G  H2G2    SING  N  N   7  
U2G  N3G  C4G     SING  N  N   8  
U2G  C4G  C5G     DOUB  Y  N   9  
U2G  C4G  N9G     SING  Y  N  10  
U2G  C5G  C6G     SING  N  N  11  
U2G  C5G  N7G     SING  Y  N  12  
U2G  C6G  O6G     DOUB  N  N  13  
U2G  N7G  C8G     DOUB  Y  N  14  
U2G  C8G  N9G     SING  Y  N  15  
U2G  C8G  H8G     SING  N  N  16  
U2G  N9G  C1B     SING  N  N  17  
U2G  C1B  C2B     SING  N  N  18  
U2G  C1B  O4B     SING  N  N  19  
U2G  C1B  "H1G'"  SING  N  N  20  
U2G  C2B  O2B     SING  N  N  21  
U2G  C2B  C3B     SING  N  N  22  
U2G  C2B  "H2G'"  SING  N  N  23  
U2G  O2B  HOG2    SING  N  N  24  
U2G  C3B  O3B     SING  N  N  25  
U2G  C3B  C4B     SING  N  N  26  
U2G  C3B  "H3G'"  SING  N  N  27  
U2G  O3B  HOG3    SING  N  N  28  
U2G  C4B  O4B     SING  N  N  29  
U2G  C4B  C5B     SING  N  N  30  
U2G  C4B  "H4G'"  SING  N  N  31  
U2G  C5B  O5B     SING  N  N  32  
U2G  C5B  H5G1    SING  N  N  33  
U2G  C5B  H5G2    SING  N  N  34  
U2G  O5B  P       SING  N  N  35  
U2G  P    O1P     DOUB  N  N  36  
U2G  P    O2P     SING  N  N  37  
U2G  P    O2D     SING  N  N  38  
U2G  O2P  HOP2    SING  N  N  39  
U2G  O5D  C5D     SING  N  N  40  
U2G  O5D  HOU5    SING  N  N  41  
U2G  C5D  C4D     SING  N  N  42  
U2G  C5D  H5U1    SING  N  N  43  
U2G  C5D  H5U2    SING  N  N  44  
U2G  C4D  O4D     SING  N  N  45  
U2G  C4D  C3D     SING  N  N  46  
U2G  C4D  "H4U'"  SING  N  N  47  
U2G  O4D  C1D     SING  N  N  48  
U2G  C3D  O3D     SING  N  N  49  
U2G  C3D  C2D     SING  N  N  50  
U2G  C3D  "H3U'"  SING  N  N  51  
U2G  O3D  HOU3    SING  N  N  52  
U2G  C2D  O2D     SING  N  N  53  
U2G  C2D  C1D     SING  N  N  54  
U2G  C2D  "H2U'"  SING  N  N  55  
U2G  C1D  N1U     SING  N  N  56  
U2G  C1D  "H1U'"  SING  N  N  57  
U2G  N1U  C2U     SING  N  N  58  
U2G  N1U  C6U     SING  N  N  59  
U2G  C2U  O2U     DOUB  N  N  60  
U2G  C2U  N3U     SING  N  N  61  
U2G  N3U  C4U     SING  N  N  62  
U2G  N3U  H3U     SING  N  N  63  
U2G  C4U  O4U     DOUB  N  N  64  
U2G  C4U  C5U     SING  N  N  65  
U2G  C5U  C6U     DOUB  N  N  66  
U2G  C5U  H5U     SING  N  N  67  
U2G  C6U  H6U     SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U2G  SMILES            ACDLabs               10.04  "O=C1C=CN(C(=O)N1)C5OC(CO)C(O)C5OP(=O)(O)OCC4OC(n3cnc2c3N=C(N)NC2=O)C(O)C4O"  
U2G  SMILES_CANONICAL  CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[C@@H]4[C@H](O)[C@@H](CO)O[C@H]4N5C=CC(=O)NC5=O)[C@@H](O)[C@H]3O"  
U2G  SMILES            CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO)O[CH]4N5C=CC(=O)NC5=O)[CH](O)[CH]3O"  
U2G  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4N5C=CC(=O)NC5=O)CO)O)O)O)N=C(NC2=O)N"  
U2G  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4N5C=CC(=O)NC5=O)CO)O)O)O)N=C(NC2=O)N"  
U2G  InChI             InChI                 1.03   "InChI=1S/C19H24N7O13P/c20-18-23-14-9(15(32)24-18)21-5-26(14)16-12(31)10(29)7(38-16)4-36-40(34,35)39-13-11(30)6(3-27)37-17(13)25-2-1-8(28)22-19(25)33/h1-2,5-7,10-13,16-17,27,29-31H,3-4H2,(H,34,35)(H,22,28,33)(H3,20,23,24,32)/t6-,7-,10-,11-,12-,13-,16-,17-/m1/s1"  
U2G  InChIKey          InChI                 1.03   DFYLLEBFVZTKHD-VMIOUTBZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U2G  "SYSTEMATIC NAME"  ACDLabs               10.04  "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R,5R)-2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-3-yl hydrogen (S)-phosphate (non-preferred name)"  
U2G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U2G  "Create component"   1999-07-08  RCSB  
U2G  "Modify descriptor"  2011-06-04  RCSB  
U2G  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     U2G
_pdbx_chem_comp_synonyms.name        "PHOSPHORIC ACID-2'-[2'-DEOXY-URIDINE]ESTER-5'-GUANOSINE ESTER"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
