data_YYG
#

_chem_comp.id                                   YYG
_chem_comp.name                                 
;4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC ACID
METHYL ESTER
;

_chem_comp.type                                 "RNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C21 H29 N6 O12 P"
_chem_comp.mon_nstd_parent_comp_id              G
_chem_comp.pdbx_synonyms                        "MODIFIED GUANOSINE-5'-PHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-10-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       588.462
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    YYG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       486D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YYG  P       P     P  0  1  N  N  N   5.752  107.848  270.630   1.682  -0.127  -8.592  P       YYG   1  
YYG  OP1     O1P   O  0  1  N  N  N   6.065  106.876  269.558   2.467   1.073  -8.228  OP1     YYG   2  
YYG  OP2     O2P   O  0  1  N  N  N   5.687  109.273  270.166   2.680  -1.292  -9.081  OP2     YYG   3  
YYG  OP3     O3P   O  0  1  N  Y  N   4.304  107.366  271.137   0.661   0.238  -9.782  OP3     YYG   4  
YYG  "O5'"   O5*   O  0  1  N  N  N   6.605  107.739  271.975   0.852  -0.635  -7.310  "O5'"   YYG   5  
YYG  "C5'"   C5*   C  0  1  N  N  N   5.889  108.177  273.172  -0.010   0.437  -6.925  "C5'"   YYG   6  
YYG  "C4'"   C4*   C  0  1  N  N  R   6.851  107.958  274.314  -0.833   0.017  -5.705  "C4'"   YYG   7  
YYG  "O4'"   O4*   O  0  1  N  N  N   6.553  106.734  274.962   0.036  -0.272  -4.589  "O4'"   YYG   8  
YYG  "C3'"   C3*   C  0  1  N  N  S   8.326  107.836  273.928  -1.718   1.187  -5.222  "C3'"   YYG   9  
YYG  "O3'"   O3*   O  0  1  N  N  N   9.008  109.081  273.707  -3.050   1.046  -5.720  "O3'"   YYG  10  
YYG  "C2'"   C2*   C  0  1  N  N  R   8.896  107.068  275.111  -1.699   1.063  -3.681  "C2'"   YYG  11  
YYG  "O2'"   O2*   O  0  1  N  N  N   9.114  108.003  276.148  -3.019   0.843  -3.180  "O2'"   YYG  12  
YYG  "C1'"   C1*   C  0  1  N  N  R   7.745  106.128  275.462  -0.801  -0.166  -3.417  "C1'"   YYG  13  
YYG  N9      N9    N  0  1  Y  N  N   7.972  104.855  274.853   0.018   0.048  -2.222  N9      YYG  14  
YYG  C8      C8    C  0  1  Y  N  N   7.401  104.414  273.663   1.249   0.637  -2.183  C8      YYG  15  
YYG  N7      N7    N  0  1  Y  N  N   7.788  103.193  273.326   1.683   0.660  -0.957  N7      YYG  16  
YYG  C5      C5    C  0  1  Y  N  N   8.631  102.845  274.336   0.757   0.088  -0.146  C5      YYG  17  
YYG  C6      C6    C  0  1  N  N  N   9.374  101.647  274.566   0.696  -0.154   1.248  C6      YYG  18  
YYG  O6      O6    O  0  1  N  N  N   9.364  100.662  273.793   1.619   0.181   1.968  O6      YYG  19  
YYG  N1      N1    N  0  1  Y  N  N  10.138  101.601  275.669  -0.387  -0.757   1.774  N1      YYG  20  
YYG  C2      C2    C  0  1  Y  N  N  10.153  102.655  276.498  -1.430  -1.141   0.981  C2      YYG  21  
YYG  N2      N2    N  0  1  Y  N  N  11.060  102.267  277.588  -2.342  -1.699   1.747  N2      YYG  22  
YYG  N3      N3    N  0  1  N  N  N   9.507  103.823  276.396  -1.396  -0.916  -0.380  N3      YYG  23  
YYG  C3      C3    C  0  1  N  N  N   9.636  104.811  277.335  -2.523  -1.333  -1.219  C3      YYG  24  
YYG  C4      C4    C  0  1  Y  N  N   8.762  103.835  275.272  -0.308  -0.304  -0.949  C4      YYG  25  
YYG  C10     C10   C  0  1  N  N  N  12.398  100.214  278.062  -2.675  -2.244   4.203  C10     YYG  26  
YYG  C11     C11   C  0  1  Y  N  N  11.446  101.046  277.250  -1.918  -1.695   3.021  C11     YYG  27  
YYG  C12     C12   C  0  1  Y  N  N  10.888  100.616  276.062  -0.709  -1.110   3.066  C12     YYG  28  
YYG  C13     C13   C  0  1  N  N  N  11.089   99.279  275.386   0.136  -0.890   4.294  C13     YYG  29  
YYG  C14     C14   C  0  1  N  N  N   9.858   98.449  275.661  -0.198   0.471   4.906  C14     YYG  30  
YYG  C15     C15   C  0  1  N  N  S  10.202   97.151  276.299   0.659   0.694   6.152  C15     YYG  31  
YYG  C16     C16   C  0  1  N  N  N   9.584   97.035  277.662   0.329   2.035   6.756  C16     YYG  32  
YYG  O17     O17   O  0  1  N  N  N   8.643   97.759  278.002   0.936   3.020   6.408  O17     YYG  33  
YYG  O18     O18   O  0  1  N  N  N  10.092   96.064  278.595  -0.639   2.135   7.679  O18     YYG  34  
YYG  C19     C19   C  0  1  N  N  N  10.814   96.746  279.617  -0.957   3.427   8.261  C19     YYG  35  
YYG  N20     N20   N  0  1  N  N  N   9.622   96.059  275.478   0.385  -0.361   7.130  N20     YYG  36  
YYG  C21     C21   C  0  1  N  N  N   8.333   96.087  275.209   1.352  -0.758   7.981  C21     YYG  37  
YYG  O22     O22   O  0  1  N  N  N   7.561   96.827  275.818   2.450  -0.240   7.938  O22     YYG  38  
YYG  O23     O23   O  0  1  N  N  N   7.807   95.231  274.190   1.100  -1.729   8.880  O23     YYG  39  
YYG  C24     C24   C  0  1  N  N  N   6.915   94.279  274.771   2.141  -2.157   9.797  C24     YYG  40  
YYG  HOP2    2HOP  H  0  0  N  N  N   5.486  109.896  270.853   3.157  -0.948  -9.848  HOP2    YYG  41  
YYG  HOP3    3HOP  H  0  0  N  N  N   4.103  107.989  271.824   0.171  -0.568  -9.988  HOP3    YYG  42  
YYG  "H5'"   1H5*  H  0  1  N  N  N   5.499  109.219  273.106  -0.681   0.677  -7.750  "H5'"   YYG  43  
YYG  "H5''"  2H5*  H  0  0  N  N  N   4.902  107.677  273.313   0.587   1.313  -6.677  "H5''"  YYG  44  
YYG  "H4'"   H4*   H  0  1  N  N  N   6.718  108.868  274.943  -1.448  -0.850  -5.943  "H4'"   YYG  45  
YYG  "H3'"   H3*   H  0  1  N  N  N   8.455  107.337  272.939  -1.294   2.142  -5.535  "H3'"   YYG  46  
YYG  "HO3'"  H3T   H  0  0  N  Y  N   9.924  109.005  273.467  -3.554   1.801  -5.388  "HO3'"  YYG  47  
YYG  "H2'"   H2*   H  0  1  N  N  N   9.853  106.526  274.928  -1.264   1.955  -3.231  "H2'"   YYG  48  
YYG  "HO2'"  2HO*  H  0  0  N  N  N   9.470  107.523  276.886  -3.544   1.616  -3.428  "HO2'"  YYG  49  
YYG  "H1'"   H1*   H  0  1  N  N  N   7.660  105.964  276.561  -1.410  -1.063  -3.303  "H1'"   YYG  50  
YYG  H8      H8    H  0  1  N  N  N   6.697  104.987  273.036   1.780   1.025  -3.039  H8      YYG  51  
YYG  H31     1H3   H  0  1  N  N  N   9.097  105.783  277.250  -3.287  -1.797  -0.596  H31     YYG  52  
YYG  H32     2H3   H  0  1  N  N  N   9.384  104.370  278.327  -2.943  -0.462  -1.722  H32     YYG  53  
YYG  H33     3H3   H  0  1  N  N  N  10.723  105.033  277.446  -2.176  -2.050  -1.963  H33     YYG  54  
YYG  H101    1H10  H  0  0  N  N  N  12.723   99.186  277.777  -2.417  -3.294   4.344  H101    YYG  55  
YYG  H102    2H10  H  0  0  N  N  N  13.321  100.821  278.208  -2.410  -1.681   5.098  H102    YYG  56  
YYG  H103    3H10  H  0  0  N  N  N  11.981  100.152  279.094  -3.746  -2.155   4.022  H103    YYG  57  
YYG  H131    1H13  H  0  0  N  N  N  11.320   99.369  274.299   1.190  -0.915   4.018  H131    YYG  58  
YYG  H132    2H13  H  0  0  N  N  N  12.034   98.772  275.692  -0.067  -1.676   5.021  H132    YYG  59  
YYG  H141    1H14  H  0  0  N  N  N   9.112   99.015  276.267  -1.253   0.495   5.182  H141    YYG  60  
YYG  H142    2H14  H  0  0  N  N  N   9.253   98.300  274.736   0.005   1.256   4.179  H142    YYG  61  
YYG  H15     H15   H  0  1  N  N  N  11.312   97.086  276.378   1.714   0.670   5.877  H15     YYG  62  
YYG  H191    1H19  H  0  0  N  N  N  11.207   95.993  280.339  -1.763   3.311   8.985  H191    YYG  63  
YYG  H192    2H19  H  0  0  N  N  N  11.615   97.403  279.206  -0.075   3.829   8.760  H192    YYG  64  
YYG  H193    3H19  H  0  0  N  N  N  10.205   97.537  280.113  -1.272   4.112   7.473  H193    YYG  65  
YYG  HN20    HN20  H  0  0  N  N  N  10.125   95.263  275.085  -0.491  -0.774   7.165  HN20    YYG  66  
YYG  H241    1H24  H  0  0  N  N  N   6.505   93.612  273.977   1.754  -2.944  10.444  H241    YYG  67  
YYG  H242    2H24  H  0  0  N  N  N   7.395   93.702  275.595   2.991  -2.537   9.230  H242    YYG  68  
YYG  H243    3H24  H  0  0  N  N  N   6.108   94.768  275.365   2.460  -1.311  10.406  H243    YYG  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YYG  P      OP1     DOUB  N  N   1  
YYG  P      OP2     SING  N  N   2  
YYG  P      OP3     SING  N  N   3  
YYG  P      "O5'"   SING  N  N   4  
YYG  OP2    HOP2    SING  N  N   5  
YYG  OP3    HOP3    SING  N  N   6  
YYG  "O5'"  "C5'"   SING  N  N   7  
YYG  "C5'"  "C4'"   SING  N  N   8  
YYG  "C5'"  "H5'"   SING  N  N   9  
YYG  "C5'"  "H5''"  SING  N  N  10  
YYG  "C4'"  "O4'"   SING  N  N  11  
YYG  "C4'"  "C3'"   SING  N  N  12  
YYG  "C4'"  "H4'"   SING  N  N  13  
YYG  "O4'"  "C1'"   SING  N  N  14  
YYG  "C3'"  "O3'"   SING  N  N  15  
YYG  "C3'"  "C2'"   SING  N  N  16  
YYG  "C3'"  "H3'"   SING  N  N  17  
YYG  "O3'"  "HO3'"  SING  N  N  18  
YYG  "C2'"  "O2'"   SING  N  N  19  
YYG  "C2'"  "C1'"   SING  N  N  20  
YYG  "C2'"  "H2'"   SING  N  N  21  
YYG  "O2'"  "HO2'"  SING  N  N  22  
YYG  "C1'"  N9      SING  N  N  23  
YYG  "C1'"  "H1'"   SING  N  N  24  
YYG  N9     C8      SING  Y  N  25  
YYG  N9     C4      SING  Y  N  26  
YYG  C8     N7      DOUB  Y  N  27  
YYG  C8     H8      SING  N  N  28  
YYG  N7     C5      SING  Y  N  29  
YYG  C5     C6      SING  N  N  30  
YYG  C5     C4      DOUB  Y  N  31  
YYG  C6     O6      DOUB  N  N  32  
YYG  C6     N1      SING  N  N  33  
YYG  N1     C2      SING  Y  N  34  
YYG  N1     C12     SING  Y  N  35  
YYG  C2     N2      DOUB  Y  N  36  
YYG  C2     N3      SING  N  N  37  
YYG  N2     C11     SING  Y  N  38  
YYG  N3     C3      SING  N  N  39  
YYG  N3     C4      SING  N  N  40  
YYG  C3     H31     SING  N  N  41  
YYG  C3     H32     SING  N  N  42  
YYG  C3     H33     SING  N  N  43  
YYG  C10    C11     SING  N  N  44  
YYG  C10    H101    SING  N  N  45  
YYG  C10    H102    SING  N  N  46  
YYG  C10    H103    SING  N  N  47  
YYG  C11    C12     DOUB  Y  N  48  
YYG  C12    C13     SING  N  N  49  
YYG  C13    C14     SING  N  N  50  
YYG  C13    H131    SING  N  N  51  
YYG  C13    H132    SING  N  N  52  
YYG  C14    C15     SING  N  N  53  
YYG  C14    H141    SING  N  N  54  
YYG  C14    H142    SING  N  N  55  
YYG  C15    C16     SING  N  N  56  
YYG  C15    N20     SING  N  N  57  
YYG  C15    H15     SING  N  N  58  
YYG  C16    O17     DOUB  N  N  59  
YYG  C16    O18     SING  N  N  60  
YYG  O18    C19     SING  N  N  61  
YYG  C19    H191    SING  N  N  62  
YYG  C19    H192    SING  N  N  63  
YYG  C19    H193    SING  N  N  64  
YYG  N20    C21     SING  N  N  65  
YYG  N20    HN20    SING  N  N  66  
YYG  C21    O22     DOUB  N  N  67  
YYG  C21    O23     SING  N  N  68  
YYG  O23    C24     SING  N  N  69  
YYG  C24    H241    SING  N  N  70  
YYG  C24    H242    SING  N  N  71  
YYG  C24    H243    SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YYG  SMILES            ACDLabs               10.04  "O=C(OC)C(NC(=O)OC)CCc3c(nc4N(c1c(ncn1C2OC(C(O)C2O)COP(=O)(O)O)C(=O)n34)C)C"  
YYG  SMILES_CANONICAL  CACTVS                3.341  "COC(=O)N[C@@H](CCc1n2C(=O)c3ncn([C@@H]4O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]4O)c3N(C)c2nc1C)C(=O)OC"  
YYG  SMILES            CACTVS                3.341  "COC(=O)N[CH](CCc1n2C(=O)c3ncn([CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O)c3N(C)c2nc1C)C(=O)OC"  
YYG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(n2c(n1)N(c3c(ncn3[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)C2=O)C)CC[C@@H](C(=O)OC)NC(=O)OC"  
YYG  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(n2c(n1)N(c3c(ncn3C4C(C(C(O4)COP(=O)(O)O)O)O)C2=O)C)CCC(C(=O)OC)NC(=O)OC"  
YYG  InChI             InChI                 1.03   "InChI=1S/C21H29N6O12P/c1-9-11(6-5-10(19(31)36-3)24-21(32)37-4)27-17(30)13-16(25(2)20(27)23-9)26(8-22-13)18-15(29)14(28)12(39-18)7-38-40(33,34)35/h8,10,12,14-15,18,28-29H,5-7H2,1-4H3,(H,24,32)(H2,33,34,35)/t10-,12+,14+,15+,18+/m0/s1"  
YYG  InChIKey          InChI                 1.03   WOMRPCAFQVCGCI-QHOAOGIMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YYG  "SYSTEMATIC NAME"  ACDLabs               10.04  "7-{(3S)-4-methoxy-3-[(methoxycarbonyl)amino]-4-oxobutyl}-4,6-dimethyl-3-(5-O-phosphono-beta-D-ribofuranosyl)-3,4-dihydro-9H-imidazo[1,2-a]purin-9-one"  
YYG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "methyl (2S)-4-[3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-4,6-dimethyl-9-oxo-imidazo[3,2-a]purin-7-yl]-2-(methoxycarbonylamino)butanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YYG  "Create component"   1999-10-04  EBI   
YYG  "Modify descriptor"  2011-06-04  RCSB  
YYG  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YYG
_pdbx_chem_comp_synonyms.name        "MODIFIED GUANOSINE-5'-PHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
