data_2YH
# 
_chem_comp.id                                    2YH 
_chem_comp.name                                  N~5~-D-ornithyl-L-ornithine 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C10 H22 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-14 
_chem_comp.pdbx_modified_date                    2014-04-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        246.307 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2YH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Q3D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2YH O3  O3  O 0 1 N N N 4.094  86.438 -6.552  1.533  -2.195 0.893  O3  2YH 1  
2YH C6  C6  C 0 1 N N N 4.249  86.448 -7.769  1.677  -1.292 0.095  C6  2YH 2  
2YH C7  C7  C 0 1 N N R 3.167  85.801 -8.593  3.046  -0.978 -0.450 C7  2YH 3  
2YH N3  N3  N 0 1 N N N 3.481  85.478 -10.027 3.924  -2.142 -0.266 N3  2YH 4  
2YH C8  C8  C 0 1 N N N 1.896  86.656 -8.502  3.629  0.223  0.297  C8  2YH 5  
2YH C9  C9  C 0 1 N N N 0.683  85.783 -8.191  4.963  0.620  -0.338 C9  2YH 6  
2YH C10 C10 C 0 1 N N N 0.608  84.504 -9.035  5.546  1.821  0.408  C10 2YH 7  
2YH N2  N2  N 0 1 N N N 1.033  83.277 -8.289  6.827  2.202  -0.201 N2  2YH 8  
2YH N1  N1  N 0 1 N N N 5.362  87.035 -8.334  0.610  -0.574 -0.308 N1  2YH 9  
2YH C5  C5  C 0 1 N N N 6.502  87.110 -7.396  -0.722 -0.883 0.217  C5  2YH 10 
2YH C4  C4  C 0 1 N N N 7.703  87.744 -8.102  -1.747 0.073  -0.397 C4  2YH 11 
2YH C3  C3  C 0 1 N N N 9.019  87.361 -7.423  -3.138 -0.250 0.151  C3  2YH 12 
2YH C2  C2  C 0 1 N N S 10.152 88.310 -7.805  -4.163 0.706  -0.463 C2  2YH 13 
2YH N4  N4  N 0 1 N N N 10.411 88.277 -9.275  -3.879 2.078  -0.021 N4  2YH 14 
2YH C1  C1  C 0 1 N N N 11.385 87.938 -7.039  -5.548 0.311  -0.019 C1  2YH 15 
2YH O2  O2  O 0 1 N Y N 11.645 88.466 -5.972  -6.182 -0.705 -0.625 O2  2YH 16 
2YH O1  O1  O 0 1 N N N 12.215 87.020 -7.524  -6.087 0.909  0.882  O1  2YH 17 
2YH H1  H1  H 0 1 N N N 2.930  84.846 -8.102  2.970  -0.744 -1.512 H1  2YH 18 
2YH H2  H2  H 0 1 N N N 4.311  84.921 -10.070 4.011  -2.379 0.711  H2  2YH 19 
2YH H3  H3  H 0 1 N N N 2.718  84.971 -10.429 3.596  -2.931 -0.802 H3  2YH 20 
2YH H5  H5  H 0 1 N N N 2.019  87.402 -7.703  2.934  1.061  0.235  H5  2YH 21 
2YH H6  H6  H 0 1 N N N 1.736  87.169 -9.462  3.788  -0.041 1.342  H6  2YH 22 
2YH H7  H7  H 0 1 N N N -0.226 86.374 -8.375  5.658  -0.218 -0.276 H7  2YH 23 
2YH H8  H8  H 0 1 N N N 0.725  85.496 -7.130  4.804  0.884  -1.383 H8  2YH 24 
2YH H9  H9  H 0 1 N N N 1.263  84.625 -9.911  4.852  2.659  0.347  H9  2YH 25 
2YH H10 H10 H 0 1 N N N -0.431 84.367 -9.370  5.705  1.558  1.454  H10 2YH 26 
2YH H11 H11 H 0 1 N N N 0.963  82.480 -8.889  7.233  2.994  0.275  H11 2YH 27 
2YH H12 H12 H 0 1 N N N 1.980  83.383 -7.986  7.467  1.422  -0.214 H12 2YH 28 
2YH H14 H14 H 0 1 N N N 5.394  87.373 -9.275  0.725  0.148  -0.946 H14 2YH 29 
2YH H15 H15 H 0 1 N N N 6.222  87.723 -6.527  -0.984 -1.910 -0.039 H15 2YH 30 
2YH H16 H16 H 0 1 N N N 6.767  86.097 -7.060  -0.721 -0.767 1.301  H16 2YH 31 
2YH H17 H17 H 0 1 N N N 7.594  88.838 -8.079  -1.485 1.100  -0.142 H17 2YH 32 
2YH H18 H18 H 0 1 N N N 7.726  87.400 -9.146  -1.748 -0.043 -1.481 H18 2YH 33 
2YH H19 H19 H 0 1 N N N 8.880  87.394 -6.332  -3.400 -1.276 -0.105 H19 2YH 34 
2YH H20 H20 H 0 1 N N N 9.292  86.340 -7.727  -3.138 -0.134 1.235  H20 2YH 35 
2YH H21 H21 H 0 1 N N N 9.857  89.331 -7.522  -4.102 0.655  -1.550 H21 2YH 36 
2YH H22 H22 H 0 1 N N N 11.156 88.906 -9.497  -3.930 2.152  0.984  H22 2YH 37 
2YH H23 H23 H 0 1 N N N 10.666 87.349 -9.548  -2.982 2.390  -0.361 H23 2YH 38 
2YH H25 H25 H 0 1 N Y N 12.458 88.111 -5.633  -7.069 -0.921 -0.305 H25 2YH 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2YH N3  C7  SING N N 1  
2YH N4  C2  SING N N 2  
2YH C10 N2  SING N N 3  
2YH C10 C9  SING N N 4  
2YH C7  C8  SING N N 5  
2YH C7  C6  SING N N 6  
2YH C8  C9  SING N N 7  
2YH N1  C6  SING N N 8  
2YH N1  C5  SING N N 9  
2YH C4  C3  SING N N 10 
2YH C4  C5  SING N N 11 
2YH C2  C3  SING N N 12 
2YH C2  C1  SING N N 13 
2YH C6  O3  DOUB N N 14 
2YH O1  C1  DOUB N N 15 
2YH C1  O2  SING N N 16 
2YH C7  H1  SING N N 17 
2YH N3  H2  SING N N 18 
2YH N3  H3  SING N N 19 
2YH C8  H5  SING N N 20 
2YH C8  H6  SING N N 21 
2YH C9  H7  SING N N 22 
2YH C9  H8  SING N N 23 
2YH C10 H9  SING N N 24 
2YH C10 H10 SING N N 25 
2YH N2  H11 SING N N 26 
2YH N2  H12 SING N N 27 
2YH N1  H14 SING N N 28 
2YH C5  H15 SING N N 29 
2YH C5  H16 SING N N 30 
2YH C4  H17 SING N N 31 
2YH C4  H18 SING N N 32 
2YH C3  H19 SING N N 33 
2YH C3  H20 SING N N 34 
2YH C2  H21 SING N N 35 
2YH N4  H22 SING N N 36 
2YH N4  H23 SING N N 37 
2YH O2  H25 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2YH SMILES           ACDLabs              12.01 "O=C(O)C(N)CCCNC(=O)C(N)CCCN"                                                                                      
2YH InChI            InChI                1.03  "InChI=1S/C10H22N4O3/c11-5-1-3-7(12)9(15)14-6-2-4-8(13)10(16)17/h7-8H,1-6,11-13H2,(H,14,15)(H,16,17)/t7-,8+/m1/s1" 
2YH InChIKey         InChI                1.03  MCMLHDBHZRLOED-SFYZADRCSA-N                                                                                        
2YH SMILES_CANONICAL CACTVS               3.385 "NCCC[C@@H](N)C(=O)NCCC[C@H](N)C(O)=O"                                                                             
2YH SMILES           CACTVS               3.385 "NCCC[CH](N)C(=O)NCCC[CH](N)C(O)=O"                                                                                
2YH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(C[C@H](C(=O)NCCC[C@@H](C(=O)O)N)N)CN"                                                                           
2YH SMILES           "OpenEye OEToolkits" 1.7.6 "C(CC(C(=O)NCCCC(C(=O)O)N)N)CN"                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2YH "SYSTEMATIC NAME" ACDLabs              12.01 N~5~-D-ornithyl-L-ornithine                                            
2YH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-5-[[(2R)-2,5-bis(azanyl)pentanoyl]amino]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2YH "Create component" 2014-04-14 RCSB 
2YH "Initial release"  2014-04-23 RCSB 
# 
