data_A2H
# 
_chem_comp.id                                    A2H 
_chem_comp.name                                  "4-Chloro-3-aminomethyl-7-[ethoxy]-3H-benzo[C][1,2]oxaborol-1-ol modified adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H22 B Cl N6 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -3 
_chem_comp.pdbx_initial_date                     2015-02-03 
_chem_comp.pdbx_modified_date                    2016-02-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        567.661 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A2H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5AGT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A2H B      B      B  -1 1 N N N 6.434  25.241 11.234 1.620  -0.267 0.510  B      A2H 1  
A2H P      P      P  0  1 N N N -0.325 26.315 10.052 -4.201 -4.427 -0.166 P      A2H 2  
A2H CL     CL     CL 0  0 N N N 10.930 27.047 9.714  6.551  -1.198 0.710  CL     A2H 3  
A2H N1     N1     N  0  1 Y N N 1.165  24.568 18.022 -1.830 5.997  -0.250 N1     A2H 4  
A2H O1     O1     O  0  1 N N N 7.516  24.286 11.231 2.132  -0.193 1.779  O1     A2H 5  
A2H C2     C2     C  0  1 Y N N 1.845  25.638 17.606 -0.923 5.202  -0.788 C2     A2H 6  
A2H N3     N3     N  0  1 Y N N 2.476  25.679 16.426 -0.979 3.891  -0.680 N3     A2H 7  
A2H C4     C4     C  0  1 Y N N 2.404  24.586 15.642 -1.970 3.308  -0.013 C4     A2H 8  
A2H C5     C5     C  0  1 Y N N 1.705  23.454 16.032 -2.960 4.111  0.579  C5     A2H 9  
A2H C6     C6     C  0  1 Y N N 1.066  23.446 17.273 -2.856 5.505  0.436  C6     A2H 10 
A2H N6     N6     N  0  1 N N N 0.369  22.373 17.709 -3.801 6.346  0.998  N6     A2H 11 
A2H N7     N7     N  0  1 Y N N 1.837  22.530 15.050 -3.838 3.278  1.187  N7     A2H 12 
A2H C8     C8     C  0  1 Y N N 2.585  23.107 14.089 -3.459 2.045  1.011  C8     A2H 13 
A2H N9     N9     N  0  1 Y N N 2.929  24.360 14.443 -2.312 2.011  0.276  N9     A2H 14 
A2H "C1'"  "C1'"  C  0  1 N N R 3.783  25.328 13.705 -1.578 0.810  -0.130 "C1'"  A2H 15 
A2H C10    C10    C  0  1 N N S 8.644  25.126 11.140 3.418  -0.837 1.724  C10    A2H 16 
A2H C11    C11    C  0  1 Y N N 8.356  26.369 10.429 3.932  -0.654 0.316  C11    A2H 17 
A2H C12    C12    C  0  1 Y N N 7.003  26.505 10.628 2.834  -0.304 -0.458 C12    A2H 18 
A2H C13    C13    C  0  1 Y N N 9.191  27.319 9.899  5.179  -0.765 -0.261 C13    A2H 19 
A2H C14    C14    C  0  1 Y N N 8.622  28.487 9.428  5.336  -0.530 -1.617 C14    A2H 20 
A2H C15    C15    C  0  1 Y N N 7.254  28.656 9.553  4.245  -0.186 -2.392 C15    A2H 21 
A2H C16    C16    C  0  1 Y N N 6.429  27.679 10.146 2.989  -0.073 -1.813 C16    A2H 22 
A2H C17    C17    C  0  1 N N N 9.625  25.155 12.258 4.376  -0.182 2.722  C17    A2H 23 
A2H N18    N18    N  0  1 N N N 8.845  25.816 13.319 3.910  -0.441 4.091  N18    A2H 24 
A2H O19    O19    O  0  1 N N N 5.083  27.860 10.252 1.915  0.265  -2.574 O19    A2H 25 
A2H O1P    O1P    O  0  1 N N N -1.004 25.067 10.498 -5.119 -4.643 -1.416 O1P    A2H 26 
A2H "C2'"  "C2'"  C  0  1 N N R 4.828  24.582 12.894 -0.446 0.508  0.874  "C2'"  A2H 27 
A2H "O2'"  "O2'"  O  0  1 N N N 5.969  25.386 12.612 0.820  0.817  0.249  "O2'"  A2H 28 
A2H C20    C20    C  0  1 N N N 4.460  29.091 9.852  2.150  0.489  -3.965 C20    A2H 29 
A2H C21    C21    C  0  1 N N N 2.977  29.003 10.096 0.834  0.856  -4.653 C21    A2H 30 
A2H O2P    O2P    O  -1 1 N N N 0.174  26.265 8.629  -5.091 -4.170 1.098  O2P    A2H 31 
A2H "C3'"  "C3'"  C  0  1 N N S 4.212  24.380 11.536 -0.427 -1.048 0.956  "C3'"  A2H 32 
A2H "O3'"  "O3'"  O  0  1 N N N 5.304  24.583 10.648 0.846  -1.392 0.366  "O3'"  A2H 33 
A2H O3P    O3P    O  -1 1 N N N -0.976 27.616 10.449 -3.323 -5.705 0.065  O3P    A2H 34 
A2H "C4'"  "C4'"  C  0  1 N N R 3.169  25.496 11.435 -1.551 -1.481 -0.010 "C4'"  A2H 35 
A2H "O4'"  "O4'"  O  0  1 N N N 3.060  26.086 12.740 -2.441 -0.346 -0.079 "O4'"  A2H 36 
A2H "C5'"  "C5'"  C  0  1 N N N 1.765  25.062 11.035 -2.288 -2.702 0.544  "C5'"  A2H 37 
A2H "O5'"  "O5'"  O  0  1 N N N 1.017  26.273 10.951 -3.244 -3.157 -0.416 "O5'"  A2H 38 
A2H H2     H2     H  0  1 N N N 1.888  26.506 18.247 -0.105 5.644  -1.338 H2     A2H 39 
A2H HN6    HN6    H  0  1 N N N -0.016 22.569 18.611 -3.718 7.307  0.892  HN6    A2H 40 
A2H HN6A   HN6A   H  0  0 N N N -0.371 22.173 17.067 -4.546 5.975  1.496  HN6A   A2H 41 
A2H H8     H8     H  0  1 N N N 2.869  22.630 13.163 -3.978 1.178  1.391  H8     A2H 42 
A2H "H1'"  "H1'"  H  0  1 N N N 4.288  25.995 14.420 -1.170 0.937  -1.133 "H1'"  A2H 43 
A2H H10    H10    H  0  1 N N N 9.234  24.595 10.378 3.314  -1.899 1.949  H10    A2H 44 
A2H H14    H14    H  0  1 N N N 9.232  29.252 8.972  6.313  -0.616 -2.069 H14    A2H 45 
A2H H15    H15    H  0  1 N N N 6.804  29.566 9.184  4.370  -0.005 -3.450 H15    A2H 46 
A2H H17    H17    H  0  1 N N N 9.926  24.139 12.554 5.375  -0.598 2.593  H17    A2H 47 
A2H H17A   H17A   H  0  0 N N N 10.518 25.740 11.993 4.404  0.893  2.545  H17A   A2H 48 
A2H HN18   HN18   H  0  0 N N N 9.405  25.898 14.143 4.526  -0.019 4.768  HN18   A2H 49 
A2H HN1A   HN1A   H  0  0 N N N 8.569  26.727 13.012 2.961  -0.123 4.216  HN1A   A2H 50 
A2H "H2'"  "H2'"  H  0  1 N N N 5.089  23.623 13.365 -0.582 1.002  1.836  "H2'"  A2H 51 
A2H H20    H20    H  0  1 N N N 4.880  29.922 10.438 2.863  1.304  -4.087 H20    A2H 52 
A2H H20A   H20A   H  0  0 N N N 4.646  29.266 8.782  2.555  -0.417 -4.416 H20A   A2H 53 
A2H H21    H21    H  0  1 N N N 2.498  29.945 9.790  0.121  0.041  -4.532 H21    A2H 54 
A2H H21A   H21A   H  0  0 N N N 2.558  28.172 9.510  0.429  1.762  -4.202 H21A   A2H 55 
A2H H21B   H21B   H  0  0 N N N 2.791  28.828 11.166 1.013  1.027  -5.714 H21B   A2H 56 
A2H "H3'"  "H3'"  H  0  1 N N N 3.751  23.386 11.438 -0.548 -1.430 1.970  "H3'"  A2H 57 
A2H "H4'"  "H4'"  H  0  1 N N N 3.526  26.246 10.714 -1.139 -1.700 -0.996 "H4'"  A2H 58 
A2H "H5'"  "H5'"  H  0  1 N N N 1.781  24.549 10.062 -1.571 -3.497 0.748  "H5'"  A2H 59 
A2H "H5'A" "H5'A" H  0  0 N N N 1.335  24.393 11.795 -2.800 -2.429 1.466  "H5'A" A2H 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A2H B     O1     SING N N 1  
A2H B     C12    SING N N 2  
A2H B     "O2'"  SING N N 3  
A2H B     "O3'"  SING N N 4  
A2H P     O1P    DOUB N N 5  
A2H P     O2P    SING N N 6  
A2H P     O3P    SING N N 7  
A2H P     "O5'"  SING N N 8  
A2H CL    C13    SING N N 9  
A2H N1    C2     DOUB Y N 10 
A2H N1    C6     SING Y N 11 
A2H O1    C10    SING N N 12 
A2H C2    N3     SING Y N 13 
A2H N3    C4     DOUB Y N 14 
A2H C4    C5     SING Y N 15 
A2H C4    N9     SING Y N 16 
A2H C5    C6     DOUB Y N 17 
A2H C5    N7     SING Y N 18 
A2H C6    N6     SING N N 19 
A2H N7    C8     DOUB Y N 20 
A2H C8    N9     SING Y N 21 
A2H N9    "C1'"  SING N N 22 
A2H "C1'" "C2'"  SING N N 23 
A2H "C1'" "O4'"  SING N N 24 
A2H C10   C11    SING N N 25 
A2H C10   C17    SING N N 26 
A2H C11   C12    DOUB Y N 27 
A2H C11   C13    SING Y N 28 
A2H C12   C16    SING Y N 29 
A2H C13   C14    DOUB Y N 30 
A2H C14   C15    SING Y N 31 
A2H C15   C16    DOUB Y N 32 
A2H C16   O19    SING N N 33 
A2H C17   N18    SING N N 34 
A2H O19   C20    SING N N 35 
A2H "C2'" "O2'"  SING N N 36 
A2H "C2'" "C3'"  SING N N 37 
A2H C20   C21    SING N N 38 
A2H "C3'" "O3'"  SING N N 39 
A2H "C3'" "C4'"  SING N N 40 
A2H "C4'" "O4'"  SING N N 41 
A2H "C4'" "C5'"  SING N N 42 
A2H "C5'" "O5'"  SING N N 43 
A2H C2    H2     SING N N 44 
A2H N6    HN6    SING N N 45 
A2H N6    HN6A   SING N N 46 
A2H C8    H8     SING N N 47 
A2H "C1'" "H1'"  SING N N 48 
A2H C10   H10    SING N N 49 
A2H C14   H14    SING N N 50 
A2H C15   H15    SING N N 51 
A2H C17   H17    SING N N 52 
A2H C17   H17A   SING N N 53 
A2H N18   HN18   SING N N 54 
A2H N18   HN1A   SING N N 55 
A2H "C2'" "H2'"  SING N N 56 
A2H C20   H20    SING N N 57 
A2H C20   H20A   SING N N 58 
A2H C21   H21    SING N N 59 
A2H C21   H21A   SING N N 60 
A2H C21   H21B   SING N N 61 
A2H "C3'" "H3'"  SING N N 62 
A2H "C4'" "H4'"  SING N N 63 
A2H "C5'" "H5'"  SING N N 64 
A2H "C5'" "H5'A" SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A2H InChI            InChI                1.03  
"InChI=1S/C20H24BClN6O9P/c1-2-32-10-4-3-9(22)13-11(5-23)35-21(14(10)13)36-16-12(6-33-38(29,30)31)34-20(17(16)37-21)28-8-27-15-18(24)25-7-26-19(15)28/h3-4,7-8,11-12,16-17,20H,2,5-6,23H2,1H3,(H2,24,25,26)(H2,29,30,31)/q-1/p-2/t11-,12-,16-,17-,20-,21+/m1/s1" 
A2H InChIKey         InChI                1.03  QVHGEDIRODVXDV-RIMGRJFKSA-L 
A2H SMILES_CANONICAL CACTVS               3.385 "CCOc1ccc(Cl)c2[C@@H](CN)O[B-]3(O[C@@H]4[C@@H](CO[P]([O-])([O-])=O)O[C@H]([C@@H]4O3)n5cnc6c(N)ncnc56)c12" 
A2H SMILES           CACTVS               3.385 "CCOc1ccc(Cl)c2[CH](CN)O[B-]3(O[CH]4[CH](CO[P]([O-])([O-])=O)O[CH]([CH]4O3)n5cnc6c(N)ncnc56)c12" 
A2H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[B-]12(c3c(ccc(c3[C@H](O1)CN)Cl)OCC)O[C@@H]4[C@H](O[C@H]([C@@H]4O2)n5cnc6c5ncnc6N)COP(=O)([O-])[O-]" 
A2H SMILES           "OpenEye OEToolkits" 1.7.6 "[B-]12(c3c(ccc(c3C(O1)CN)Cl)OCC)OC4C(OC(C4O2)n5cnc6c5ncnc6N)COP(=O)([O-])[O-]" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
;[(1S,5R,6R,7'S,8R)-7'-(aminomethyl)-6-(6-aminopurin-9-yl)-5'-chloranyl-2'-ethoxy-spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-8-yl]methyl phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A2H "Create component" 2015-02-03 EBI  
A2H "Initial release"  2016-03-02 RCSB 
# 
