data_Y2H
# 
_chem_comp.id                                    Y2H 
_chem_comp.name                                  "4-[(7-benzyl-9-methyl-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]-N-(1-methylpiperidin-4-yl)benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H29 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        471.554 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2H C10 C1  C 0 1 Y N N N N N -13.715 7.560  45.639 2.725   0.054  0.727  C10 Y2H 1  
Y2H O14 O1  O 0 1 N N N N N N -10.653 8.508  42.136 7.257   -1.313 0.499  O14 Y2H 2  
Y2H C16 C2  C 0 1 Y N N N N N -11.357 12.474 50.972 -3.165  -0.531 0.160  C16 Y2H 3  
Y2H C18 C3  C 0 1 N N N N N N -10.060 10.605 44.234 5.778   -3.434 -0.831 C18 Y2H 4  
Y2H C19 C4  C 0 1 N N N N N N -10.012 13.971 54.342 -6.769  0.649  -0.045 C19 Y2H 5  
Y2H C20 C5  C 0 1 Y N N N N N -12.774 12.365 51.124 -2.997  -1.178 -1.068 C20 Y2H 6  
Y2H C21 C6  C 0 1 Y N N N N N -10.745 11.702 50.009 -2.103  -0.470 1.066  C21 Y2H 7  
Y2H C22 C7  C 0 1 N N N N N N -10.979 14.134 55.519 -7.517  1.003  -1.334 C22 Y2H 8  
Y2H C23 C8  C 0 1 N N N N N N -8.804  13.113 54.724 -7.613  -0.334 0.772  C23 Y2H 9  
Y2H C24 C9  C 0 1 N N N N N N -8.186  13.580 56.045 -8.977  0.294  1.065  C24 Y2H 10 
Y2H C25 C10 C 0 1 N N N N N N -10.233 14.533 56.801 -8.884  1.592  -0.979 C25 Y2H 11 
Y2H C26 C11 C 0 1 Y N N N N N -12.877 10.794 49.237 -0.730  -1.690 -0.476 C26 Y2H 12 
Y2H C27 C12 C 0 1 Y N N N N N -12.263 5.339  43.199 6.021   2.020  0.553  C27 Y2H 13 
Y2H C28 C13 C 0 1 Y N N N N N -13.545 11.495 50.280 -1.786  -1.752 -1.381 C28 Y2H 14 
Y2H N1  N1  N 0 1 N N N N N N -11.059 9.526  44.214 5.286   -2.201 -0.213 N1  Y2H 15 
Y2H C2  C14 C 0 1 Y N N N N N -11.947 9.204  45.225 3.963   -1.804 -0.147 C2  Y2H 16 
Y2H C3  C15 C 0 1 N N N N N N -11.247 8.566  43.160 6.046   -1.265 0.386  C3  Y2H 17 
Y2H N4  N2  N 0 1 N N N N N N -12.303 7.700  43.548 5.263   -0.267 0.842  N4  Y2H 18 
Y2H C5  C16 C 0 1 Y N N N N N -12.718 8.061  44.800 3.943   -0.574 0.523  C5  Y2H 19 
Y2H N6  N3  N 0 1 Y N N N N N -12.129 9.830  46.430 2.819   -2.327 -0.565 N6  Y2H 20 
Y2H C7  C17 C 0 1 Y N N N N N -13.130 9.254  47.181 1.674   -1.698 -0.345 C7  Y2H 21 
Y2H C8  C18 C 0 1 N N N N N N -10.412 13.326 51.845 -4.460  0.091  0.496  C8  Y2H 22 
Y2H N9  N4  N 0 1 Y N N N N N -13.917 8.158  46.848 1.622   -0.534 0.285  N9  Y2H 23 
Y2H N11 N5  N 0 1 N N N N N N -10.709 13.327 53.228 -5.484  0.031  -0.379 N11 Y2H 24 
Y2H C12 C19 C 0 1 N N N N N N -12.883 6.643  42.781 5.722   0.931  1.550  C12 Y2H 25 
Y2H N13 N6  N 0 1 N N N N N N -9.177  13.574 57.116 -9.653  0.613  -0.199 N13 Y2H 26 
Y2H N15 N7  N 0 1 N N N N N N -13.466 9.822  48.420 0.494   -2.273 -0.795 N15 Y2H 27 
Y2H O17 O2  O 0 1 N N N N N N -9.425  13.924 51.389 -4.604  0.658  1.562  O17 Y2H 28 
Y2H C29 C20 C 0 1 Y N N N N N -11.471 10.867 49.157 -0.894  -1.047 0.748  C29 Y2H 29 
Y2H C30 C21 C 0 1 N N N N N N -8.544  13.890 58.421 -11.021 1.090  0.041  C30 Y2H 30 
Y2H C31 C22 C 0 1 Y N N N N N -12.892 4.457  44.082 5.027   2.905  0.177  C31 Y2H 31 
Y2H C32 C23 C 0 1 Y N N N N N -10.996 4.997  42.633 7.290   2.139  0.019  C32 Y2H 32 
Y2H C33 C24 C 0 1 Y N N N N N -10.403 3.810  42.982 7.566   3.142  -0.891 C33 Y2H 33 
Y2H C34 C25 C 0 1 Y N N N N N -12.283 3.277  44.457 5.303   3.907  -0.734 C34 Y2H 34 
Y2H C35 C26 C 0 1 Y N N N N N -11.013 2.931  43.912 6.572   4.026  -1.268 C35 Y2H 35 
Y2H H36 H1  H 0 1 N N N N N N -14.315 6.715  45.336 2.675   1.003  1.240  H36 Y2H 36 
Y2H H43 H2  H 0 1 N N N N N N -9.505  10.609 43.284 6.002   -3.250 -1.881 H43 Y2H 37 
Y2H H41 H3  H 0 1 N N N N N N -10.567 11.572 44.366 6.682   -3.762 -0.318 H41 Y2H 38 
Y2H H42 H4  H 0 1 N N N N N N -9.360  10.441 45.067 5.015   -4.209 -0.753 H42 Y2H 39 
Y2H H44 H5  H 0 1 N N N N N N -9.658  14.966 54.033 -6.599  1.555  0.538  H44 Y2H 40 
Y2H H45 H6  H 0 1 N N N N N N -13.273 12.946 51.885 -3.816  -1.227 -1.770 H45 Y2H 41 
Y2H H46 H7  H 0 1 N N N N N N -9.670  11.744 49.910 -2.230  0.029  2.016  H46 Y2H 42 
Y2H H47 H8  H 0 1 N N N N N N -11.714 14.915 55.274 -6.941  1.735  -1.899 H47 Y2H 43 
Y2H H48 H9  H 0 1 N N N N N N -11.500 13.181 55.689 -7.653  0.103  -1.934 H48 Y2H 44 
Y2H H49 H10 H 0 1 N N N N N N -9.126  12.067 54.829 -7.750  -1.254 0.205  H49 Y2H 45 
Y2H H50 H11 H 0 1 N N N N N N -8.047  13.185 53.929 -7.105  -0.556 1.711  H50 Y2H 46 
Y2H H51 H12 H 0 1 N N N N N N -7.798  14.602 55.919 -9.585  -0.409 1.635  H51 Y2H 47 
Y2H H52 H13 H 0 1 N N N N N N -7.361  12.905 56.315 -8.840  1.207  1.644  H52 Y2H 48 
Y2H H53 H14 H 0 1 N N N N N N -10.948 14.567 57.636 -8.748  2.499  -0.390 H53 Y2H 49 
Y2H H54 H15 H 0 1 N N N N N N -9.785  15.528 56.661 -9.425  1.831  -1.895 H54 Y2H 50 
Y2H H55 H16 H 0 1 N N N N N N -14.607 11.376 50.433 -1.655  -2.252 -2.329 H55 Y2H 51 
Y2H H37 H17 H 0 1 N N N N N N -11.523 12.806 53.485 -5.369  -0.421 -1.229 H37 Y2H 52 
Y2H H38 H18 H 0 1 N N N N N N -13.968 6.610  42.960 6.625   0.696  2.114  H38 Y2H 53 
Y2H H39 H19 H 0 1 N N N N N N -12.693 6.816  41.711 4.943   1.268  2.235  H39 Y2H 54 
Y2H H40 H21 H 0 1 N N N N N N -14.312 9.451  48.803 0.521   -3.080 -1.333 H40 Y2H 55 
Y2H H56 H22 H 0 1 N N N N N N -10.948 10.268 48.426 -0.073  -1.000 1.447  H56 Y2H 56 
Y2H H58 H23 H 0 1 N N N N N N -9.308  13.880 59.212 -10.991 1.988  0.658  H58 Y2H 57 
Y2H H57 H24 H 0 1 N N N N N N -7.773  13.138 58.646 -11.499 1.319  -0.912 H57 Y2H 58 
Y2H H59 H25 H 0 1 N N N N N N -8.081  14.886 58.372 -11.591 0.315  0.556  H59 Y2H 59 
Y2H H60 H26 H 0 1 N N N N N N -13.867 4.702  44.476 4.035   2.812  0.594  H60 Y2H 60 
Y2H H61 H27 H 0 1 N N N N N N -10.510 5.666  41.938 8.066   1.448  0.313  H61 Y2H 61 
Y2H H62 H28 H 0 1 N N N N N N -9.455  3.541  42.540 8.558   3.235  -1.308 H62 Y2H 62 
Y2H H63 H29 H 0 1 N N N N N N -12.768 2.618  45.162 4.527   4.598  -1.028 H63 Y2H 63 
Y2H H64 H30 H 0 1 N N N N N N -10.523 2.014  44.203 6.788   4.810  -1.979 H64 Y2H 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2H N1  C2  SING N N 1  
Y2H N1  C3  SING N N 2  
Y2H N1  C18 SING N N 3  
Y2H C2  C5  DOUB Y N 4  
Y2H C2  N6  SING Y N 5  
Y2H C3  N4  SING N N 6  
Y2H C3  O14 DOUB N N 7  
Y2H N4  C12 SING N N 8  
Y2H N4  C5  SING N N 9  
Y2H C5  C10 SING Y N 10 
Y2H N6  C7  DOUB Y N 11 
Y2H C7  N15 SING N N 12 
Y2H C7  N9  SING Y N 13 
Y2H C8  C16 SING N N 14 
Y2H C8  N11 SING N N 15 
Y2H C8  O17 DOUB N N 16 
Y2H N9  C10 DOUB Y N 17 
Y2H N11 C19 SING N N 18 
Y2H C12 C27 SING N N 19 
Y2H N13 C24 SING N N 20 
Y2H N13 C30 SING N N 21 
Y2H N13 C25 SING N N 22 
Y2H N15 C26 SING N N 23 
Y2H C16 C21 DOUB Y N 24 
Y2H C16 C20 SING Y N 25 
Y2H C19 C22 SING N N 26 
Y2H C19 C23 SING N N 27 
Y2H C20 C28 DOUB Y N 28 
Y2H C21 C29 SING Y N 29 
Y2H C22 C25 SING N N 30 
Y2H C23 C24 SING N N 31 
Y2H C26 C28 SING Y N 32 
Y2H C26 C29 DOUB Y N 33 
Y2H C27 C31 DOUB Y N 34 
Y2H C27 C32 SING Y N 35 
Y2H C31 C34 SING Y N 36 
Y2H C32 C33 DOUB Y N 37 
Y2H C33 C35 SING Y N 38 
Y2H C34 C35 DOUB Y N 39 
Y2H C10 H36 SING N N 40 
Y2H C18 H43 SING N N 41 
Y2H C18 H41 SING N N 42 
Y2H C18 H42 SING N N 43 
Y2H C19 H44 SING N N 44 
Y2H C20 H45 SING N N 45 
Y2H C21 H46 SING N N 46 
Y2H C22 H47 SING N N 47 
Y2H C22 H48 SING N N 48 
Y2H C23 H49 SING N N 49 
Y2H C23 H50 SING N N 50 
Y2H C24 H51 SING N N 51 
Y2H C24 H52 SING N N 52 
Y2H C25 H53 SING N N 53 
Y2H C25 H54 SING N N 54 
Y2H C28 H55 SING N N 55 
Y2H N11 H37 SING N N 56 
Y2H C12 H38 SING N N 57 
Y2H C12 H39 SING N N 58 
Y2H N15 H40 SING N N 59 
Y2H C29 H56 SING N N 60 
Y2H C30 H58 SING N N 61 
Y2H C30 H57 SING N N 62 
Y2H C30 H59 SING N N 63 
Y2H C31 H60 SING N N 64 
Y2H C32 H61 SING N N 65 
Y2H C33 H62 SING N N 66 
Y2H C34 H63 SING N N 67 
Y2H C35 H64 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2H SMILES           ACDLabs              12.01 "CN1CCC(NC(=O)c2ccc(Nc3nc4N(C)C(=O)N(Cc5ccccc5)c4cn3)cc2)CC1"                                                                                                                             
Y2H InChI            InChI                1.06  "InChI=1S/C26H29N7O2/c1-31-14-12-21(13-15-31)28-24(34)19-8-10-20(11-9-19)29-25-27-16-22-23(30-25)32(2)26(35)33(22)17-18-6-4-3-5-7-18/h3-11,16,21H,12-15,17H2,1-2H3,(H,28,34)(H,27,29,30)" 
Y2H InChIKey         InChI                1.06  UGLOBKNDLOPVQW-UHFFFAOYSA-N                                                                                                                                                               
Y2H SMILES_CANONICAL CACTVS               3.385 "CN1CCC(CC1)NC(=O)c2ccc(Nc3ncc4N(Cc5ccccc5)C(=O)N(C)c4n3)cc2"                                                                                                                             
Y2H SMILES           CACTVS               3.385 "CN1CCC(CC1)NC(=O)c2ccc(Nc3ncc4N(Cc5ccccc5)C(=O)N(C)c4n3)cc2"                                                                                                                             
Y2H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)c2ccc(cc2)Nc3ncc4c(n3)N(C(=O)N4Cc5ccccc5)C"                                                                                                                             
Y2H SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)c2ccc(cc2)Nc3ncc4c(n3)N(C(=O)N4Cc5ccccc5)C"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2H "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(7-benzyl-9-methyl-8-oxo-8,9-dihydro-7H-purin-2-yl)amino]-N-(1-methylpiperidin-4-yl)benzamide"      
Y2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[9-methyl-8-oxidanylidene-7-(phenylmethyl)purin-2-yl]amino]-~{N}-(1-methylpiperidin-4-yl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2H "Create component" 2023-06-09 RCSB 
Y2H "Initial release"  2024-12-18 RCSB 
# 
