data_3VI
#

_chem_comp.id                                   3VI
_chem_comp.name                                 "1,1'-methylenebis{4-[(E)-(hydroxyimino)methyl]pyridin-1-ium}"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H14 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2021-07-06
_chem_comp.pdbx_modified_date                   2021-09-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       258.276
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3VI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RB7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3VI  CAC  C1   C  0  1  N  N  N  94.141  49.344  -11.237   4.603   0.995   0.554  CAC  3VI   1  
3VI  CAD  C2   C  0  1  N  N  N  91.975  52.762   -2.840  -4.600   1.001  -0.551  CAD  3VI   2  
3VI  CAE  C3   C  0  1  Y  N  N  91.930  49.743  -10.374   2.682  -0.278   1.531  CAE  3VI   3  
3VI  CAF  C4   C  0  1  Y  N  N  93.697  51.323   -9.940   2.961  -0.266  -0.854  CAF  3VI   4  
3VI  CAG  C5   C  0  1  Y  N  N  91.879  51.569   -4.928  -2.679  -0.271  -1.532  CAG  3VI   5  
3VI  CAH  C6   C  0  1  Y  N  N  91.012  53.813   -4.779  -2.969  -0.279   0.852  CAH  3VI   6  
3VI  CAI  C7   C  0  1  Y  N  N  91.040  50.532   -9.655   1.569  -1.073   1.349  CAI  3VI   7  
3VI  CAJ  C8   C  0  1  Y  N  N  92.816  52.119   -9.218   1.844  -1.070  -0.942  CAJ  3VI   8  
3VI  CAK  C9   C  0  1  Y  N  N  91.528  51.517   -6.272  -1.567  -1.068  -1.352  CAK  3VI   9  
3VI  CAL  C10  C  0  1  Y  N  N  90.657  53.771   -6.123  -1.843  -1.071   0.940  CAL  3VI  10  
3VI  CAM  C11  C  0  1  N  N  N  90.538  52.570   -8.306  -0.000  -2.285  -0.003  CAM  3VI  11  
3VI  CAP  C12  C  0  1  Y  N  N  93.256  50.137  -10.516   3.405   0.143   0.409  CAP  3VI  12  
3VI  CAQ  C13  C  0  1  Y  N  N  91.622  52.715   -4.184  -3.406   0.143  -0.409  CAQ  3VI  13  
3VI  NAN  N1   N  0  1  N  N  N  93.772  49.085  -12.498   5.255   1.378  -0.495  NAN  3VI  14  
3VI  NAO  N2   N  0  1  N  N  N  90.944  52.783   -1.984  -5.257   1.373   0.498  NAO  3VI  15  
3VI  NAR  N3   N  1  1  Y  N  N  91.481  51.726   -9.073   1.188  -1.440   0.141  NAR  3VI  16  
3VI  NAS  N4   N  1  1  Y  N  N  90.914  52.620   -6.875  -1.187  -1.438  -0.144  NAS  3VI  17  
3VI  OAA  O1   O  0  1  N  N  N  94.671  48.255  -13.295   6.403   2.195  -0.356  OAA  3VI  18  
3VI  OAB  O2   O  0  1  N  N  N  91.266  52.833   -0.561  -6.402   2.196   0.361  OAB  3VI  19  
3VI  H1   H1   H  0  1  N  N  N  95.058  48.965  -10.812   4.932   1.302   1.536  H1   3VI  20  
3VI  H2   H2   H  0  1  N  N  N  93.003  52.780   -2.510  -4.923   1.318  -1.532  H2   3VI  21  
3VI  H3   H3   H  0  1  N  N  N  91.591  48.821  -10.824   2.988   0.018   2.524  H3   3VI  22  
3VI  H4   H4   H  0  1  N  N  N  94.727  51.627  -10.054   3.493   0.033  -1.745  H4   3VI  23  
3VI  H5   H5   H  0  1  N  N  N  92.352  50.718   -4.461  -2.982   0.032  -2.523  H5   3VI  24  
3VI  H6   H6   H  0  1  N  N  N  90.813  54.700   -4.197  -3.501   0.018   1.744  H6   3VI  25  
3VI  H7   H7   H  0  1  N  N  N  90.010  50.224   -9.546   1.001  -1.400   2.208  H7   3VI  26  
3VI  H8   H8   H  0  1  N  N  N  93.161  53.039   -8.770   1.501  -1.401  -1.911  H8   3VI  27  
3VI  H9   H9   H  0  1  N  N  N  91.729  50.627   -6.850  -1.000  -1.393  -2.212  H9   3VI  28  
3VI  H10  H10  H  0  1  N  N  N  90.184  54.625   -6.585  -1.498  -1.401   1.908  H10  3VI  29  
3VI  H11  H11  H  0  1  N  N  N  90.552  53.590   -8.717   0.106  -2.913  -0.887  H11  3VI  30  
3VI  H12  H12  H  0  1  N  N  N  89.525  52.152   -8.397  -0.107  -2.915   0.880  H12  3VI  31  
3VI  H13  H13  H  0  1  N  N  N  94.308  48.140  -14.165   6.822   2.430  -1.195  H13  3VI  32  
3VI  H14  H14  H  0  1  N  N  N  90.463  52.844   -0.054  -6.826   2.421   1.200  H14  3VI  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3VI  OAA  NAN  SING  N  N   1  
3VI  NAN  CAC  DOUB  N  E   2  
3VI  CAC  CAP  SING  N  N   3  
3VI  CAP  CAE  DOUB  Y  N   4  
3VI  CAP  CAF  SING  Y  N   5  
3VI  CAE  CAI  SING  Y  N   6  
3VI  CAF  CAJ  DOUB  Y  N   7  
3VI  CAI  NAR  DOUB  Y  N   8  
3VI  CAJ  NAR  SING  Y  N   9  
3VI  NAR  CAM  SING  N  N  10  
3VI  CAM  NAS  SING  N  N  11  
3VI  NAS  CAK  DOUB  Y  N  12  
3VI  NAS  CAL  SING  Y  N  13  
3VI  CAK  CAG  SING  Y  N  14  
3VI  CAL  CAH  DOUB  Y  N  15  
3VI  CAG  CAQ  DOUB  Y  N  16  
3VI  CAH  CAQ  SING  Y  N  17  
3VI  CAQ  CAD  SING  N  N  18  
3VI  CAD  NAO  DOUB  N  E  19  
3VI  NAO  OAB  SING  N  N  20  
3VI  CAC  H1   SING  N  N  21  
3VI  CAD  H2   SING  N  N  22  
3VI  CAE  H3   SING  N  N  23  
3VI  CAF  H4   SING  N  N  24  
3VI  CAG  H5   SING  N  N  25  
3VI  CAH  H6   SING  N  N  26  
3VI  CAI  H7   SING  N  N  27  
3VI  CAJ  H8   SING  N  N  28  
3VI  CAK  H9   SING  N  N  29  
3VI  CAL  H10  SING  N  N  30  
3VI  CAM  H11  SING  N  N  31  
3VI  CAM  H12  SING  N  N  32  
3VI  OAA  H13  SING  N  N  33  
3VI  OAB  H14  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3VI  SMILES            ACDLabs               12.01  "O\N=C\c1cc[n+](C[n+]2ccc(\C=N\O)cc2)cc1"  
3VI  InChI             InChI                 1.03   "InChI=1S/C13H12N4O2/c18-14-9-12-1-5-16(6-2-12)11-17-7-3-13(4-8-17)10-15-19/h1-10H,11H2/p+2"  
3VI  InChIKey          InChI                 1.03   CMMIGIRGSXYBDN-UHFFFAOYSA-P  
3VI  SMILES_CANONICAL  CACTVS                3.385  "O\N=C\c1cc[n+](C[n+]2ccc(cc2)\C=N\O)cc1"  
3VI  SMILES            CACTVS                3.385  "ON=Cc1cc[n+](C[n+]2ccc(cc2)C=NO)cc1"  
3VI  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c(cc[n+](c1)C[n+]2ccc(cc2)/C=N/O)/C=N/O"  
3VI  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c[n+](ccc1C=NO)C[n+]2ccc(cc2)C=NO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3VI  "SYSTEMATIC NAME"  ACDLabs               12.01  "1,1'-methylenebis{4-[(E)-(hydroxyimino)methyl]pyridin-1-ium}"  
3VI  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(~{N}~{E})-~{N}-[[1-[[4-[(~{E})-hydroxyiminomethyl]pyridin-1-ium-1-yl]methyl]pyridin-1-ium-4-yl]methylidene]hydroxylamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3VI  "Create component"  2021-07-06  RCSB  
3VI  "Initial release"   2021-09-22  RCSB  
##
