data_BOI
# 
_chem_comp.id                                    BOI 
_chem_comp.name                                  "[[(2~{R},3~{S},4~{R},5~{R})-5-[(4~{E})-4-[(4-chlorophenyl)methoxyimino]-3-methyl-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H24 Cl N3 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-08 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        555.797 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BOI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QGA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BOI O8  O1  O  0 1 N N N 13.802 15.253 33.929 -0.404 -4.139 1.918  O8  BOI 1  
BOI C15 C1  C  0 1 N N N 12.777 15.892 33.794 -1.004 -3.242 1.360  C15 BOI 2  
BOI N2  N1  N  0 1 N N N 12.671 16.904 32.842 -2.243 -2.921 1.778  N2  BOI 3  
BOI C14 C2  C  0 1 N N N 13.814 17.090 31.940 -2.856 -3.648 2.892  C14 BOI 4  
BOI C6  C3  C  0 1 N N N 11.585 17.773 32.742 -2.938 -1.895 1.145  C6  BOI 5  
BOI N1  N2  N  0 1 N N N 11.695 18.734 31.881 -4.141 -1.564 1.531  N1  BOI 6  
BOI O7  O2  O  0 1 N N N 10.561 19.586 31.873 -4.833 -0.518 0.875  O7  BOI 7  
BOI C7  C4  C  0 1 N N N 10.397 20.110 30.545 -6.137 -0.263 1.401  C7  BOI 8  
BOI C8  C5  C  0 1 Y N N 9.690  19.122 29.664 -6.778 0.863  0.632  C8  BOI 9  
BOI C13 C6  C  0 1 Y N N 8.567  18.442 30.110 -7.536 0.590  -0.491 C13 BOI 10 
BOI C12 C7  C  0 1 Y N N 7.951  17.486 29.324 -8.124 1.623  -1.197 C12 BOI 11 
BOI C11 C8  C  0 1 Y N N 8.474  17.204 28.082 -7.954 2.931  -0.779 C11 BOI 12 
BOI CL  CL1 CL 0 0 N N N 7.840  15.863 27.175 -8.692 4.228  -1.664 CL  BOI 13 
BOI C10 C9  C  0 1 Y N N 9.562  17.888 27.596 -7.195 3.204  0.345  C10 BOI 14 
BOI C9  C10 C  0 1 Y N N 10.166 18.843 28.391 -6.612 2.170  1.053  C9  BOI 15 
BOI C5  C11 C  0 1 N N N 10.493 17.532 33.613 -2.284 -1.192 0.031  C5  BOI 16 
BOI C4  C12 C  0 1 N N N 10.570 16.536 34.510 -1.046 -1.571 -0.328 C4  BOI 17 
BOI N   N3  N  0 1 N N N 11.671 15.719 34.601 -0.414 -2.591 0.345  N   BOI 18 
BOI C3  C13 C  0 1 N N R 11.727 14.641 35.605 0.939  -2.981 -0.061 C3  BOI 19 
BOI O6  O3  O  0 1 N N N 10.419 14.115 35.787 1.813  -1.832 -0.068 O6  BOI 20 
BOI C16 C14 C  0 1 N N R 12.219 15.132 36.978 0.937  -3.486 -1.521 C16 BOI 21 
BOI O9  O4  O  0 1 N N N 13.193 14.255 37.541 0.905  -4.914 -1.558 O9  BOI 22 
BOI C17 C15 C  0 1 N N S 10.918 15.166 37.795 2.269  -2.959 -2.101 C17 BOI 23 
BOI O10 O5  O  0 1 N N N 11.174 14.966 39.183 3.100  -4.047 -2.514 O10 BOI 24 
BOI C2  C16 C  0 1 N N R 10.141 14.003 37.199 2.918  -2.200 -0.923 C2  BOI 25 
BOI C1  C17 C  0 1 N N N 8.647  14.001 37.446 3.639  -0.949 -1.428 C1  BOI 26 
BOI O5  O6  O  0 1 N N N 8.084  12.727 37.022 4.267  -0.285 -0.330 O5  BOI 27 
BOI P1  P1  P  0 1 N N N 7.013  11.844 37.772 5.118  1.072  -0.496 P1  BOI 28 
BOI O3  O7  O  0 1 N N N 7.302  11.690 39.238 4.286  2.098  -1.164 O3  BOI 29 
BOI O4  O8  O  0 1 N N N 7.042  10.462 37.074 6.427  0.779  -1.386 O4  BOI 30 
BOI C   C18 C  0 1 N N N 5.417  12.581 37.398 5.625  1.677  1.148  C   BOI 31 
BOI P   P2  P  0 1 N N N 5.280  13.473 35.846 6.588  3.213  0.960  P   BOI 32 
BOI O   O9  O  0 1 N N N 5.883  14.843 35.947 7.791  2.943  0.141  O   BOI 33 
BOI O2  O10 O  0 1 N N N 5.924  12.609 34.743 5.683  4.328  0.233  O2  BOI 34 
BOI O1  O11 O  0 1 N N N 3.758  13.509 35.572 7.035  3.747  2.411  O1  BOI 35 
BOI H19 H1  H  0 1 N N N 14.577 16.326 32.151 -2.609 -3.150 3.830  H19 BOI 36 
BOI H17 H2  H  0 1 N N N 13.477 16.994 30.897 -3.938 -3.665 2.763  H17 BOI 37 
BOI H18 H3  H  0 1 N N N 14.245 18.090 32.095 -2.476 -4.670 2.912  H18 BOI 38 
BOI H12 H4  H  0 1 N N N 11.387 20.328 30.119 -6.748 -1.161 1.306  H12 BOI 39 
BOI H11 H5  H  0 1 N N N 9.806  21.037 30.594 -6.058 0.013  2.452  H11 BOI 40 
BOI H16 H6  H  0 1 N N N 8.167  18.663 31.088 -7.669 -0.431 -0.818 H16 BOI 41 
BOI H15 H7  H  0 1 N N N 7.072  16.968 29.679 -8.716 1.409  -2.075 H15 BOI 42 
BOI H14 H8  H  0 1 N N N 9.940  17.682 26.606 -7.062 4.224  0.672  H14 BOI 43 
BOI H13 H9  H  0 1 N N N 11.023 19.382 28.015 -6.019 2.382  1.931  H13 BOI 44 
BOI H10 H10 H  0 1 N N N 9.606  18.145 33.556 -2.789 -0.390 -0.488 H10 BOI 45 
BOI H9  H11 H  0 1 N N N 9.740  16.372 35.181 -0.544 -1.071 -1.143 H9  BOI 46 
BOI H1  H12 H  0 1 N N N 12.406 13.851 35.253 1.327  -3.750 0.607  H1  BOI 47 
BOI H20 H13 H  0 1 N N N 12.617 16.153 36.880 0.090  -3.071 -2.068 H20 BOI 48 
BOI H21 H14 H  0 1 N N N 13.471 14.590 38.385 0.902  -5.284 -2.451 H21 BOI 49 
BOI H22 H15 H  0 1 N N N 10.385 16.111 37.614 2.082  -2.285 -2.937 H22 BOI 50 
BOI H23 H16 H  0 1 N N N 10.355 14.992 39.663 2.714  -4.594 -3.211 H23 BOI 51 
BOI H   H17 H  0 1 N N N 10.563 13.064 37.586 3.612  -2.847 -0.388 H   BOI 52 
BOI H7  H18 H  0 1 N N N 8.180  14.816 36.874 4.395  -1.236 -2.159 H7  BOI 53 
BOI H8  H19 H  0 1 N N N 8.453  14.148 38.519 2.919  -0.277 -1.895 H8  BOI 54 
BOI H6  H20 H  0 1 N N N 7.238  9.788  37.714 7.020  0.115  -1.008 H6  BOI 55 
BOI H4  H21 H  0 1 N N N 5.178  13.285 38.209 4.739  1.875  1.751  H4  BOI 56 
BOI H5  H22 H  0 1 N N N 4.672  11.772 37.383 6.237  0.921  1.640  H5  BOI 57 
BOI H3  H23 H  0 1 N N N 6.607  13.106 34.309 4.876  4.555  0.715  H3  BOI 58 
BOI H2  H24 H  0 1 N N N 3.467  14.412 35.515 7.553  4.563  2.388  H2  BOI 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BOI CL  C11 SING N N 1  
BOI C10 C11 DOUB Y N 2  
BOI C10 C9  SING Y N 3  
BOI C11 C12 SING Y N 4  
BOI C9  C8  DOUB Y N 5  
BOI C12 C13 DOUB Y N 6  
BOI C8  C13 SING Y N 7  
BOI C8  C7  SING N N 8  
BOI C7  O7  SING N N 9  
BOI O7  N1  SING N N 10 
BOI N1  C6  DOUB N E 11 
BOI C14 N2  SING N N 12 
BOI C6  N2  SING N N 13 
BOI C6  C5  SING N N 14 
BOI N2  C15 SING N N 15 
BOI C5  C4  DOUB N N 16 
BOI C15 O8  DOUB N N 17 
BOI C15 N   SING N N 18 
BOI C4  N   SING N N 19 
BOI N   C3  SING N N 20 
BOI O2  P   SING N N 21 
BOI O1  P   SING N N 22 
BOI C3  O6  SING N N 23 
BOI C3  C16 SING N N 24 
BOI O6  C2  SING N N 25 
BOI P   O   DOUB N N 26 
BOI P   C   SING N N 27 
BOI C16 O9  SING N N 28 
BOI C16 C17 SING N N 29 
BOI O5  C1  SING N N 30 
BOI O5  P1  SING N N 31 
BOI O4  P1  SING N N 32 
BOI C2  C1  SING N N 33 
BOI C2  C17 SING N N 34 
BOI C   P1  SING N N 35 
BOI P1  O3  DOUB N N 36 
BOI C17 O10 SING N N 37 
BOI C14 H19 SING N N 38 
BOI C14 H17 SING N N 39 
BOI C14 H18 SING N N 40 
BOI C7  H12 SING N N 41 
BOI C7  H11 SING N N 42 
BOI C13 H16 SING N N 43 
BOI C12 H15 SING N N 44 
BOI C10 H14 SING N N 45 
BOI C9  H13 SING N N 46 
BOI C5  H10 SING N N 47 
BOI C4  H9  SING N N 48 
BOI C3  H1  SING N N 49 
BOI C16 H20 SING N N 50 
BOI O9  H21 SING N N 51 
BOI C17 H22 SING N N 52 
BOI O10 H23 SING N N 53 
BOI C2  H   SING N N 54 
BOI C1  H7  SING N N 55 
BOI C1  H8  SING N N 56 
BOI O4  H6  SING N N 57 
BOI C   H4  SING N N 58 
BOI C   H5  SING N N 59 
BOI O2  H3  SING N N 60 
BOI O1  H2  SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BOI InChI            InChI                1.06  "InChI=1S/C18H24ClN3O11P2/c1-21-14(20-31-8-11-2-4-12(19)5-3-11)6-7-22(18(21)25)17-16(24)15(23)13(33-17)9-32-35(29,30)10-34(26,27)28/h2-7,13,15-17,23-24H,8-10H2,1H3,(H,29,30)(H2,26,27,28)/b20-14+/t13-,15-,16-,17-/m1/s1" 
BOI InChIKey         InChI                1.06  LIVNQTQAYASRSG-UEUWNTQGSA-N                                                                                                                                                                                                
BOI SMILES_CANONICAL CACTVS               3.385 "CN/1C(=O)N(C=CC/1=N/OCc2ccc(Cl)cc2)[C@@H]3O[C@H](CO[P](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                                                               
BOI SMILES           CACTVS               3.385 "CN1C(=O)N(C=CC1=NOCc2ccc(Cl)cc2)[CH]3O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                                                        
BOI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1/C(=N/OCc2ccc(cc2)Cl)/C=CN(C1=O)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CP(=O)(O)O)O)O)O"                                                                                                                                 
BOI SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C(=NOCc2ccc(cc2)Cl)C=CN(C1=O)C3C(C(C(O3)COP(=O)(CP(=O)(O)O)O)O)O"                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           BOI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},4~{R},5~{R})-5-[(4~{E})-4-[(4-chlorophenyl)methoxyimino]-3-methyl-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BOI "Create component"  2021-12-08 PDBE 
BOI "Initial release"   2022-02-16 RCSB 
BOI "Modify descriptor" 2022-08-22 RCSB 
# 
