data_PMJ
# 
_chem_comp.id                                    PMJ 
_chem_comp.name                                  "N~2~-(benzylsulfonyl)-D-arginyl-N-(4-carbamimidoylbenzyl)glycinamide" 
_chem_comp.type                                  PEPTIDE-LIKE 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H32 N8 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-22 
_chem_comp.pdbx_modified_date                    2011-11-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        516.616 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PMJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PMJ 
_chem_comp.pdbx_subcomponent_list                "PMS DAR GLY 00S" 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PMJ C7   C7   C 0 1 N N N 16.883 20.076 36.292 4.688   1.314  0.352  C    PMS 1  
PMJ S8   S8   S 0 1 N N N 17.470 21.060 37.736 3.704   1.665  -1.132 S    PMS 2  
PMJ C4   C4   C 0 1 Y N N 17.784 18.846 36.064 5.540   2.512  0.684  C1   PMS 3  
PMJ C5   C5   C 0 1 Y N N 19.036 18.999 35.458 6.810   2.627  0.151  C2   PMS 4  
PMJ C6   C6   C 0 1 Y N N 19.861 17.887 35.273 7.589   3.728  0.452  C3   PMS 5  
PMJ C1   C1   C 0 1 Y N N 19.439 16.617 35.708 7.103   4.709  1.296  C4   PMS 6  
PMJ C2   C2   C 0 1 Y N N 18.186 16.472 36.323 5.833   4.595  1.829  C5   PMS 7  
PMJ C3   C3   C 0 1 Y N N 17.367 17.589 36.494 5.051   3.496  1.523  C6   PMS 8  
PMJ O10  O10  O 0 1 N N N 18.772 21.696 37.347 4.551   1.873  -2.254 O2S  PMS 9  
PMJ O9   O9   O 0 1 N N N 17.583 20.185 38.928 2.653   2.572  -0.829 O1S  PMS 10 
PMJ N11  N11  N 0 1 N N N 16.396 22.173 38.221 2.931   0.239  -1.461 N    DAR 11 
PMJ C12  C12  C 0 1 N N R 16.171 23.322 37.339 1.968   -0.311 -0.503 CA   DAR 12 
PMJ C30  C30  C 0 1 N N N 15.409 24.324 38.234 2.070   -1.837 -0.497 CB   DAR 13 
PMJ C31  C31  C 0 1 N N N 14.983 25.564 37.450 3.441   -2.254 0.037  CG   DAR 14 
PMJ C32  C32  C 0 1 N N N 14.195 26.544 38.341 3.586   -3.774 -0.060 CD   DAR 15 
PMJ N33  N33  N 0 1 N N N 15.147 26.979 39.391 4.900   -4.174 0.451  NE   DAR 16 
PMJ C34  C34  C 0 1 N N N 14.893 27.819 40.397 5.258   -5.501 0.464  CZ   DAR 17 
PMJ N35  N35  N 0 1 N N N 15.893 28.106 41.276 4.383   -6.454 -0.004 NH1  DAR 18 
PMJ N37  N37  N 0 1 N N N 13.663 28.329 40.547 6.426   -5.857 0.919  NH2  DAR 19 
PMJ C13  C13  C 0 1 N N N 15.342 22.914 36.098 0.573   0.098  -0.903 C    DAR 20 
PMJ O14  O14  O 0 1 N N N 14.440 22.071 36.173 0.401   0.781  -1.890 O    DAR 21 
PMJ N15  N15  N 0 1 N N N 15.740 23.498 34.969 -0.482  -0.296 -0.163 N    GLY 22 
PMJ C16  C16  C 0 1 N N N 15.143 23.337 33.625 -1.838  0.101  -0.551 CA   GLY 23 
PMJ C17  C17  C 0 1 N N N 15.256 21.851 33.226 -2.828  -0.464 0.435  C    GLY 24 
PMJ O18  O18  O 0 1 N N N 16.320 21.247 33.402 -2.440  -1.133 1.369  O    GLY 25 
PMJ N19  N19  N 0 1 N N N 14.151 21.276 32.756 -4.146  -0.226 0.277  N23  00S 26 
PMJ C20  C20  C 0 1 N N N 14.175 19.828 32.343 -5.108  -0.776 1.235  C16  00S 27 
PMJ C21  C21  C 0 1 Y N N 13.490 18.943 33.390 -6.503  -0.367 0.836  C17  00S 28 
PMJ C26  C26  C 0 1 Y N N 13.927 18.925 34.723 -7.240  -1.172 -0.015 C22  00S 29 
PMJ C25  C25  C 0 1 Y N N 13.295 18.123 35.688 -8.519  -0.806 -0.379 C21  00S 30 
PMJ C24  C24  C 0 1 Y N N 12.222 17.303 35.297 -9.065  0.383  0.103  C24  00S 31 
PMJ C27  C27  C 0 1 N N N 11.548 16.484 36.223 -10.436 0.784  -0.289 C27  00S 32 
PMJ N28  N28  N 0 1 N N N 10.244 16.257 36.108 -10.943 1.895  0.163  N35  00S 33 
PMJ N29  N29  N 0 1 N N N 12.159 15.995 37.292 -11.174 -0.018 -1.132 N34  00S 34 
PMJ C23  C23  C 0 1 Y N N 11.800 17.317 33.962 -8.316  1.193  0.956  C19  00S 35 
PMJ C22  C22  C 0 1 Y N N 12.430 18.125 33.012 -7.039  0.813  1.317  C18  00S 36 
PMJ H7   H7   H 0 1 N N N 16.907 20.709 35.393 5.330   0.452  0.166  H2A  PMS 37 
PMJ H7A  H7A  H 0 1 N N N 15.855 19.736 36.484 4.022   1.099  1.187  H1   PMS 38 
PMJ H5   H5   H 0 1 N N N 19.364 19.976 35.134 7.192   1.858  -0.504 H2   PMS 39 
PMJ H6   H6   H 0 1 N N N 20.823 18.002 34.796 8.582   3.818  0.036  H3   PMS 40 
PMJ H1   H1   H 0 1 N N N 20.077 15.757 35.569 7.714   5.567  1.535  H4   PMS 41 
PMJ H2   H2   H 0 1 N N N 17.857 15.501 36.662 5.451   5.363  2.485  H5   PMS 42 
PMJ H3   H3   H 0 1 N N N 16.401 17.477 36.964 4.059   3.406  1.940  H6   PMS 43 
PMJ HN11 HN11 H 0 0 N N N 15.517 21.706 38.320 3.115   -0.233 -2.289 H    DAR 44 
PMJ H12  H12  H 0 1 N N N 17.102 23.746 36.936 2.188   0.072  0.493  HA   DAR 45 
PMJ H30  H30  H 0 1 N N N 14.510 23.831 38.633 1.290   -2.251 0.143  HB2  DAR 46 
PMJ H30A H30A H 0 0 N N N 16.068 24.635 39.058 1.945   -2.214 -1.512 HB3  DAR 47 
PMJ H31  H31  H 0 1 N N N 15.882 26.072 37.071 4.222   -1.776 -0.554 HG2  DAR 48 
PMJ H31A H31A H 0 0 N N N 14.343 25.253 36.611 3.535   -1.947 1.079  HG3  DAR 49 
PMJ H32  H32  H 0 1 N N N 13.839 27.405 37.756 2.805   -4.252 0.531  HD2  DAR 50 
PMJ H32A H32A H 0 0 N N N 13.320 26.049 38.788 3.493   -4.082 -1.102 HD3  DAR 51 
PMJ HN33 HN33 H 0 0 N N N 16.073 26.605 39.341 5.516   -3.502 0.781  HE   DAR 52 
PMJ HN35 HN35 H 0 0 N N N 15.717 28.709 42.054 3.514   -6.189 -0.342 HH11 DAR 53 
PMJ HN3A HN3A H 0 0 N N N 16.803 27.714 41.143 4.636   -7.390 0.005  HH12 DAR 54 
PMJ HN37 HN37 H 0 0 N N N 13.597 28.916 41.354 6.679   -6.793 0.927  HH21 DAR 55 
PMJ HN15 HN15 H 0 0 N N N 16.527 24.111 35.037 -0.344  -0.842 0.627  H    GLY 56 
PMJ H16  H16  H 0 1 N N N 14.086 23.641 33.645 -1.911  1.189  -0.555 HA2  GLY 57 
PMJ H16A H16A H 0 0 N N N 15.681 23.963 32.898 -2.057  -0.282 -1.547 HA3  GLY 58 
PMJ HN19 HN19 H 0 0 N N N 13.306 21.805 32.677 -4.456  0.308  -0.470 HN23 00S 59 
PMJ H20  H20  H 0 1 N N N 13.645 19.722 31.385 -5.036  -1.863 1.240  H16  00S 60 
PMJ H20A H20A H 0 0 N N N 15.221 19.506 32.233 -4.889  -0.393 2.232  H16A 00S 61 
PMJ H26  H26  H 0 1 N N N 14.766 19.540 35.013 -6.814  -2.090 -0.391 H22  00S 62 
PMJ H25  H25  H 0 1 N N N 13.629 18.136 36.715 -9.095  -1.437 -1.040 H21  00S 63 
PMJ HN28 HN28 H 0 0 N N N 9.887  15.726 36.876 -11.841 2.158  -0.094 HN35 00S 64 
PMJ HN29 HN29 H 0 0 N N N 11.639 15.479 37.972 -10.796 -0.845 -1.469 HN34 00S 65 
PMJ HN2A HN2A H 0 0 N N N 13.140 16.142 37.418 -12.072 0.245  -1.389 HN3A 00S 66 
PMJ H23  H23  H 0 1 N N N 10.972 16.692 33.661 -8.733  2.115  1.332  H19  00S 67 
PMJ H22  H22  H 0 1 N N N 12.095 18.115 31.985 -6.458  1.439  1.978  H18  00S 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PMJ C6  C1   DOUB Y N 1  
PMJ C1  C2   SING Y N 2  
PMJ C1  H1   SING N N 3  
PMJ C2  C3   DOUB Y N 4  
PMJ C2  H2   SING N N 5  
PMJ C4  C3   SING Y N 6  
PMJ C3  H3   SING N N 7  
PMJ C5  C4   DOUB Y N 8  
PMJ C4  C7   SING N N 9  
PMJ C6  C5   SING Y N 10 
PMJ C5  H5   SING N N 11 
PMJ C6  H6   SING N N 12 
PMJ C7  S8   SING N N 13 
PMJ C7  H7   SING N N 14 
PMJ C7  H7A  SING N N 15 
PMJ O10 S8   DOUB N N 16 
PMJ S8  N11  SING N N 17 
PMJ S8  O9   DOUB N N 18 
PMJ C12 N11  SING N N 19 
PMJ N11 HN11 SING N N 20 
PMJ C13 C12  SING N N 21 
PMJ C12 C30  SING N N 22 
PMJ C12 H12  SING N N 23 
PMJ N15 C13  SING N N 24 
PMJ C13 O14  DOUB N N 25 
PMJ C16 N15  SING N N 26 
PMJ N15 HN15 SING N N 27 
PMJ C17 C16  SING N N 28 
PMJ C16 H16  SING N N 29 
PMJ C16 H16A SING N N 30 
PMJ N19 C17  SING N N 31 
PMJ C17 O18  DOUB N N 32 
PMJ C20 N19  SING N N 33 
PMJ N19 HN19 SING N N 34 
PMJ C20 C21  SING N N 35 
PMJ C20 H20  SING N N 36 
PMJ C20 H20A SING N N 37 
PMJ C22 C21  DOUB Y N 38 
PMJ C21 C26  SING Y N 39 
PMJ C22 C23  SING Y N 40 
PMJ C22 H22  SING N N 41 
PMJ C23 C24  DOUB Y N 42 
PMJ C23 H23  SING N N 43 
PMJ C24 C25  SING Y N 44 
PMJ C24 C27  SING N N 45 
PMJ C26 C25  DOUB Y N 46 
PMJ C25 H25  SING N N 47 
PMJ C26 H26  SING N N 48 
PMJ N28 C27  DOUB N N 49 
PMJ C27 N29  SING N N 50 
PMJ N28 HN28 SING N N 51 
PMJ N29 HN29 SING N N 52 
PMJ N29 HN2A SING N N 53 
PMJ C31 C30  SING N N 54 
PMJ C30 H30  SING N N 55 
PMJ C30 H30A SING N N 56 
PMJ C31 C32  SING N N 57 
PMJ C31 H31  SING N N 58 
PMJ C31 H31A SING N N 59 
PMJ C32 N33  SING N N 60 
PMJ C32 H32  SING N N 61 
PMJ C32 H32A SING N N 62 
PMJ N33 C34  SING N N 63 
PMJ N33 HN33 SING N N 64 
PMJ C34 N37  DOUB N N 65 
PMJ C34 N35  SING N N 66 
PMJ N35 HN35 SING N N 67 
PMJ N35 HN3A SING N N 68 
PMJ N37 HN37 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PMJ SMILES           ACDLabs              12.01 "O=S(=O)(NC(C(=O)NCC(=O)NCc1ccc(C(=[N@H])N)cc1)CCCNC(=[N@H])N)Cc2ccccc2" 
PMJ SMILES_CANONICAL CACTVS               3.370 "NC(=N)NCCC[C@@H](N[S](=O)(=O)Cc1ccccc1)C(=O)NCC(=O)NCc2ccc(cc2)C(N)=N" 
PMJ SMILES           CACTVS               3.370 "NC(=N)NCCC[CH](N[S](=O)(=O)Cc1ccccc1)C(=O)NCC(=O)NCc2ccc(cc2)C(N)=N" 
PMJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(/c1ccc(cc1)CNC(=O)CNC(=O)[C@@H](CCCN/C(=N/[H])/N)NS(=O)(=O)Cc2ccccc2)\\N" 
PMJ SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CS(=O)(=O)NC(CCCNC(=N)N)C(=O)NCC(=O)NCc2ccc(cc2)C(=N)N" 
PMJ InChI            InChI                1.03  
"InChI=1S/C23H32N8O4S/c24-21(25)18-10-8-16(9-11-18)13-29-20(32)14-30-22(33)19(7-4-12-28-23(26)27)31-36(34,35)15-17-5-2-1-3-6-17/h1-3,5-6,8-11,19,31H,4,7,12-15H2,(H3,24,25)(H,29,32)(H,30,33)(H4,26,27,28)/t19-/m1/s1" 
PMJ InChIKey         InChI                1.03  MVMUALCRWZYTQR-LJQANCHMSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PMJ "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-(benzylsulfonyl)-D-arginyl-N-(4-carbamimidoylbenzyl)glycinamide"                                                   
PMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R)-5-carbamimidamido-N-[2-[(4-carbamimidoylphenyl)methylamino]-2-oxo-ethyl]-2-(phenylmethylsulfonylamino)pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PMJ "Create component"         2010-11-22 RCSB 
PMJ "Modify aromatic_flag"     2011-06-04 RCSB 
PMJ "Modify descriptor"        2011-06-04 RCSB 
PMJ "Modify subcomponent list" 2011-09-12 RCSB 
# 
