data_RMJ
#

_chem_comp.id                                   RMJ
_chem_comp.name                                 "2-[(4-amino-6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(piperidin-1-yl)ethyl]acetamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H25 N5 O S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       391.554
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RMJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VV1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RMJ  C10  C1   C  0  1  N  N  N  19.511  -11.165  41.826   5.461   0.963  -0.190  C10  RMJ   1  
RMJ  C12  C2   C  0  1  N  N  N  17.328  -11.460  41.362   7.769   1.640  -0.457  C12  RMJ   2  
RMJ  C13  C3   C  0  1  N  N  N  17.051  -11.360  39.854   9.193   1.119  -0.668  C13  RMJ   3  
RMJ  N01  N1   N  0  1  N  N  N  22.734  -11.411  37.765  -3.165   2.512   0.157  N01  RMJ   4  
RMJ  C02  C4   C  0  1  Y  N  N  21.458  -10.893  37.314  -3.145   1.132   0.073  C02  RMJ   5  
RMJ  N03  N2   N  0  1  Y  N  N  20.883   -9.852  37.907  -1.996   0.478   0.001  N03  RMJ   6  
RMJ  C04  C5   C  0  1  Y  N  N  19.711   -9.359  37.490  -1.965  -0.847  -0.079  C04  RMJ   7  
RMJ  S05  S1   S  0  1  N  N  N  18.963   -7.929  38.306  -0.404  -1.660  -0.174  S05  RMJ   8  
RMJ  C06  C6   C  0  1  N  N  N  18.653   -8.284  40.076   0.700  -0.228  -0.121  C06  RMJ   9  
RMJ  C07  C7   C  0  1  N  N  N  19.873   -8.028  40.987   2.132  -0.694  -0.191  C07  RMJ  10  
RMJ  N08  N3   N  0  1  N  N  N  20.099   -8.819  42.194   3.135   0.205  -0.167  N08  RMJ  11  
RMJ  C09  C8   C  0  1  N  N  N  19.196   -9.887  42.608   4.527  -0.249  -0.235  C09  RMJ  12  
RMJ  N11  N4   N  0  1  N  N  N  18.609  -11.985  41.788   6.856   0.508  -0.259  N11  RMJ  13  
RMJ  C14  C9   C  0  1  N  N  N  17.988  -12.100  39.049   9.619   0.303   0.555  C14  RMJ  14  
RMJ  C15  C10  C  0  1  N  N  N  18.455  -13.320  39.668   8.624  -0.842   0.768  C15  RMJ  15  
RMJ  C16  C11  C  0  1  N  N  N  19.055  -13.152  41.070   7.217  -0.263   0.938  C16  RMJ  16  
RMJ  O17  O1   O  0  1  N  N  N  20.639   -7.169  40.711   2.380  -1.879  -0.269  O17  RMJ  17  
RMJ  N18  N5   N  0  1  Y  N  N  19.051   -9.879  36.467  -3.066  -1.574  -0.090  N18  RMJ  18  
RMJ  C19  C12  C  0  1  Y  N  N  19.557  -10.928  35.813  -4.274  -0.994  -0.020  C19  RMJ  19  
RMJ  S20  S2   S  0  1  Y  N  N  19.011  -11.817  34.527  -5.887  -1.682  -0.006  S20  RMJ  20  
RMJ  C21  C13  C  0  1  Y  N  N  20.772  -11.469  36.214  -4.356   0.391   0.071  C21  RMJ  21  
RMJ  C22  C14  C  0  1  Y  N  N  21.245  -12.643  35.399  -5.739   0.872   0.138  C22  RMJ  22  
RMJ  C23  C15  C  0  1  Y  N  N  20.286  -12.938  34.363  -6.645  -0.094   0.122  C23  RMJ  23  
RMJ  C24  C16  C  0  1  N  N  N  20.787  -14.114  33.555  -8.052   0.489   0.209  C24  RMJ  24  
RMJ  C25  C17  C  0  1  N  N  N  22.283  -14.100  33.836  -7.885   1.978  -0.153  C25  RMJ  25  
RMJ  C26  C18  C  0  1  N  N  N  22.412  -13.621  35.287  -6.423   2.235   0.244  C26  RMJ  26  
RMJ  H1   H1   H  0  1  N  N  N  20.386  -11.642  42.292   5.249   1.616  -1.037  H1   RMJ  27  
RMJ  H2   H2   H  0  1  N  N  N  19.756  -10.880  40.792   5.302   1.510   0.739  H2   RMJ  28  
RMJ  H3   H3   H  0  1  N  N  N  17.236  -10.446  41.779   7.746   2.284   0.423  H3   RMJ  29  
RMJ  H4   H4   H  0  1  N  N  N  16.550  -12.106  41.795   7.458   2.210  -1.332  H4   RMJ  30  
RMJ  H5   H5   H  0  1  N  N  N  17.099  -10.301  39.560   9.220   0.486  -1.555  H5   RMJ  31  
RMJ  H6   H6   H  0  1  N  N  N  16.041  -11.749  39.659   9.873   1.960  -0.800  H6   RMJ  32  
RMJ  H7   H7   H  0  1  N  N  N  23.058  -10.871  38.542  -2.333   3.010   0.163  H7   RMJ  33  
RMJ  H8   H8   H  0  1  N  N  N  22.626  -12.365  38.044  -4.012   2.982   0.210  H8   RMJ  34  
RMJ  H9   H9   H  0  1  N  N  N  17.825   -7.645  40.418   0.489   0.426  -0.968  H9   RMJ  35  
RMJ  H10  H10  H  0  1  N  N  N  18.364   -9.341  40.172   0.542   0.319   0.808  H10  RMJ  36  
RMJ  H11  H11  H  0  1  N  N  N  20.902   -8.621  42.757   2.937   1.152  -0.105  H11  RMJ  37  
RMJ  H12  H12  H  0  1  N  N  N  18.157   -9.584  42.410   4.686  -0.795  -1.165  H12  RMJ  38  
RMJ  H13  H13  H  0  1  N  N  N  19.324  -10.077  43.684   4.738  -0.902   0.612  H13  RMJ  39  
RMJ  H15  H15  H  0  1  N  N  N  18.858  -11.457  38.851  10.615  -0.107   0.390  H15  RMJ  40  
RMJ  H16  H16  H  0  1  N  N  N  17.499  -12.359  38.098   9.629   0.945   1.436  H16  RMJ  41  
RMJ  H17  H17  H  0  1  N  N  N  17.603  -14.012  39.743   8.642  -1.505  -0.097  H17  RMJ  42  
RMJ  H18  H18  H  0  1  N  N  N  19.227  -13.758  39.018   8.898  -1.401   1.662  H18  RMJ  43  
RMJ  H19  H19  H  0  1  N  N  N  18.790  -14.040  41.663   7.196   0.389   1.810  H19  RMJ  44  
RMJ  H20  H20  H  0  1  N  N  N  20.149  -13.093  40.968   6.504  -1.076   1.075  H20  RMJ  45  
RMJ  H21  H21  H  0  1  N  N  N  20.583  -13.974  32.483  -8.720  -0.001  -0.500  H21  RMJ  46  
RMJ  H22  H22  H  0  1  N  N  N  20.328  -15.054  33.896  -8.434   0.386   1.224  H22  RMJ  47  
RMJ  H23  H23  H  0  1  N  N  N  22.707  -15.109  33.723  -8.022   2.139  -1.222  H23  RMJ  48  
RMJ  H24  H24  H  0  1  N  N  N  22.798  -13.408  33.154  -8.570   2.600   0.424  H24  RMJ  49  
RMJ  H25  H25  H  0  1  N  N  N  22.304  -14.456  35.995  -6.367   2.599   1.270  H25  RMJ  50  
RMJ  H26  H26  H  0  1  N  N  N  23.375  -13.117  35.458  -5.965   2.951  -0.439  H26  RMJ  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RMJ  C24  C25  SING  N  N   1  
RMJ  C24  C23  SING  N  N   2  
RMJ  C25  C26  SING  N  N   3  
RMJ  C23  S20  SING  Y  N   4  
RMJ  C23  C22  DOUB  Y  N   5  
RMJ  S20  C19  SING  Y  N   6  
RMJ  C26  C22  SING  N  N   7  
RMJ  C22  C21  SING  Y  N   8  
RMJ  C19  C21  DOUB  Y  N   9  
RMJ  C19  N18  SING  Y  N  10  
RMJ  C21  C02  SING  Y  N  11  
RMJ  N18  C04  DOUB  Y  N  12  
RMJ  C02  N01  SING  N  N  13  
RMJ  C02  N03  DOUB  Y  N  14  
RMJ  C04  N03  SING  Y  N  15  
RMJ  C04  S05  SING  N  N  16  
RMJ  S05  C06  SING  N  N  17  
RMJ  C14  C15  SING  N  N  18  
RMJ  C14  C13  SING  N  N  19  
RMJ  C15  C16  SING  N  N  20  
RMJ  C13  C12  SING  N  N  21  
RMJ  C06  C07  SING  N  N  22  
RMJ  O17  C07  DOUB  N  N  23  
RMJ  C07  N08  SING  N  N  24  
RMJ  C16  N11  SING  N  N  25  
RMJ  C12  N11  SING  N  N  26  
RMJ  N11  C10  SING  N  N  27  
RMJ  C10  C09  SING  N  N  28  
RMJ  N08  C09  SING  N  N  29  
RMJ  C10  H1   SING  N  N  30  
RMJ  C10  H2   SING  N  N  31  
RMJ  C12  H3   SING  N  N  32  
RMJ  C12  H4   SING  N  N  33  
RMJ  C13  H5   SING  N  N  34  
RMJ  C13  H6   SING  N  N  35  
RMJ  N01  H7   SING  N  N  36  
RMJ  N01  H8   SING  N  N  37  
RMJ  C06  H9   SING  N  N  38  
RMJ  C06  H10  SING  N  N  39  
RMJ  N08  H11  SING  N  N  40  
RMJ  C09  H12  SING  N  N  41  
RMJ  C09  H13  SING  N  N  42  
RMJ  C14  H15  SING  N  N  43  
RMJ  C14  H16  SING  N  N  44  
RMJ  C15  H17  SING  N  N  45  
RMJ  C15  H18  SING  N  N  46  
RMJ  C16  H19  SING  N  N  47  
RMJ  C16  H20  SING  N  N  48  
RMJ  C24  H21  SING  N  N  49  
RMJ  C24  H22  SING  N  N  50  
RMJ  C25  H23  SING  N  N  51  
RMJ  C25  H24  SING  N  N  52  
RMJ  C26  H25  SING  N  N  53  
RMJ  C26  H26  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RMJ  SMILES            ACDLabs               12.01  "C(CNC(CSc1nc(N)c2c(n1)sc3c2CCC3)=O)N4CCCCC4"  
RMJ  InChI             InChI                 1.03   "InChI=1S/C18H25N5OS2/c19-16-15-12-5-4-6-13(12)26-17(15)22-18(21-16)25-11-14(24)20-7-10-23-8-2-1-3-9-23/h1-11H2,(H,20,24)(H2,19,21,22)"  
RMJ  InChIKey          InChI                 1.03   WRJMGHAVQTXKPD-UHFFFAOYSA-N  
RMJ  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(SCC(=O)NCCN2CCCCC2)nc3sc4CCCc4c13"  
RMJ  SMILES            CACTVS                3.385  "Nc1nc(SCC(=O)NCCN2CCCCC2)nc3sc4CCCc4c13"  
RMJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1CCN(CC1)CCNC(=O)CSc2nc(c3c4c(sc3n2)CCC4)N"  
RMJ  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CCN(CC1)CCNC(=O)CSc2nc(c3c4c(sc3n2)CCC4)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RMJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(4-amino-6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-[2-(piperidin-1-yl)ethyl]acetamide"  
RMJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[(12-azanyl-7-thia-9,11-diazatricyclo[6.4.0.0^{2,6}]dodeca-1(8),2(6),9,11-tetraen-10-yl)sulfanyl]-~{N}-(2-piperidin-1-ylethyl)ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RMJ  "Create component"  2020-02-17  RCSB  
RMJ  "Initial release"   2020-06-03  RCSB  
##
