data_V2J
#

_chem_comp.id                                   V2J
_chem_comp.name                                 "5'-O-[(S)-[(3S)-3-carboxypyrrolidin-1-yl](hydroxy)phosphoryl]adenosine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H21 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-19
_chem_comp.pdbx_modified_date                   2021-03-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       444.336
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V2J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XHE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V2J  C4     C1   C  0  1  Y  N  N  37.543  -20.450  -21.326   5.018  -0.089   0.425  C4     V2J   1  
V2J  C5     C2   C  0  1  Y  N  N  36.813  -20.001  -22.526   5.699  -1.212  -0.074  C5     V2J   2  
V2J  C6     C3   C  0  1  Y  N  N  37.002  -18.635  -23.004   7.070  -1.336   0.206  C6     V2J   3  
V2J  C8     C4   C  0  1  Y  N  N  36.292  -22.044  -22.134   3.630  -1.378  -0.703  C8     V2J   4  
V2J  N1     N1   N  0  1  Y  N  N  37.831  -17.796  -22.335   7.657  -0.387   0.929  N1     V2J   5  
V2J  C2     C5   C  0  1  Y  N  N  38.611  -18.191  -21.141   6.975   0.651   1.377  C2     V2J   6  
V2J  O2A    O1   O  0  1  N  N  N  38.064  -19.297  -15.378  -2.780  -1.715  -1.546  O2A    V2J   7  
V2J  PA     P1   P  0  1  N  N  N  39.202  -20.277  -15.566  -2.937  -1.030  -0.243  PA     V2J   8  
V2J  O1A    O2   O  0  1  N  N  N  39.599  -21.116  -14.356  -3.294  -2.113   0.893  O1A    V2J   9  
V2J  N      N2   N  0  1  N  N  N  40.587  -19.503  -15.991  -4.178   0.101  -0.350  N      V2J  10  
V2J  CA     C6   C  0  1  N  N  N  41.624  -20.358  -16.636  -5.465  -0.553  -0.703  CA     V2J  11  
V2J  CD     C7   C  0  1  N  N  N  40.437  -18.292  -16.839  -4.439   0.732   0.969  CD     V2J  12  
V2J  CG     C8   C  0  1  N  N  N  41.656  -18.215  -17.754  -5.873   1.293   0.856  CG     V2J  13  
V2J  CB     C9   C  0  1  N  N  S  42.098  -19.662  -17.911  -6.548   0.447  -0.244  CB     V2J  14  
V2J  C      C10  C  0  1  N  N  N  41.431  -20.315  -19.086  -7.737  -0.289   0.317  C      V2J  15  
V2J  OX     O3   O  0  1  N  N  N  41.898  -21.375  -19.575  -7.759  -1.497   0.307  OX     V2J  16  
V2J  O      O4   O  0  1  N  N  N  40.391  -19.778  -19.505  -8.771   0.396   0.829  O      V2J  17  
V2J  "O5'"  O5   O  0  1  N  N  N  38.640  -21.271  -16.727  -1.562  -0.284   0.140  "O5'"  V2J  18  
V2J  "C5'"  C11  C  0  1  N  N  N  38.631  -22.700  -16.636  -0.869   0.581  -0.762  "C5'"  V2J  19  
V2J  "C4'"  C12  C  0  1  N  N  R  38.218  -23.330  -17.975   0.392   1.120  -0.084  "C4'"  V2J  20  
V2J  "C3'"  C13  C  0  1  N  N  S  39.409  -23.650  -18.895   1.113   2.125  -1.009  "C3'"  V2J  21  
V2J  "O3'"  O6   O  0  1  N  N  N  39.599  -25.067  -19.002   0.779   3.467  -0.647  "O3'"  V2J  22  
V2J  "C2'"  C14  C  0  1  N  N  R  39.078  -23.000  -20.237   2.614   1.853  -0.763  "C2'"  V2J  23  
V2J  "O2'"  O7   O  0  1  N  N  N  39.394  -23.777  -21.408   3.256   3.017  -0.241  "O2'"  V2J  24  
V2J  "C1'"  C15  C  0  1  N  N  R  37.565  -22.732  -20.119   2.622   0.715   0.282  "C1'"  V2J  25  
V2J  "O4'"  O8   O  0  1  N  N  N  37.336  -22.462  -18.723   1.346   0.055   0.123  "O4'"  V2J  26  
V2J  N9     N3   N  0  1  Y  N  N  37.139  -21.712  -21.147   3.717  -0.219   0.009  N9     V2J  27  
V2J  N3     N4   N  0  1  Y  N  N  38.372  -19.583  -20.679   5.690   0.811   1.135  N3     V2J  28  
V2J  N6     N5   N  0  1  N  N  N  36.320  -18.263  -24.113   7.793  -2.420  -0.259  N6     V2J  29  
V2J  N7     N6   N  0  1  Y  N  N  36.066  -21.026  -22.976   4.795  -1.956  -0.756  N7     V2J  30  
V2J  H1     H1   H  0  1  N  N  N  35.843  -23.021  -22.238   2.729  -1.757  -1.163  H1     V2J  31  
V2J  H2     H2   H  0  1  N  N  N  39.298  -17.522  -20.645   7.490   1.399   1.961  H2     V2J  32  
V2J  H3     H3   H  0  1  N  N  N  39.045  -20.891  -13.618  -3.411  -1.734   1.775  H3     V2J  33  
V2J  H4     H4   H  0  1  N  N  N  41.194  -21.339  -16.886  -5.527  -0.713  -1.779  H4     V2J  34  
V2J  H5     H5   H  0  1  N  N  N  42.473  -20.494  -15.950  -5.569  -1.499  -0.172  H5     V2J  35  
V2J  H6     H6   H  0  1  N  N  N  40.386  -17.394  -16.205  -4.383  -0.012   1.764  H6     V2J  36  
V2J  H7     H7   H  0  1  N  N  N  39.520  -18.367  -17.442  -3.727   1.537   1.153  H7     V2J  37  
V2J  H8     H8   H  0  1  N  N  N  42.452  -17.612  -17.293  -6.401   1.174   1.802  H8     V2J  38  
V2J  H9     H9   H  0  1  N  N  N  41.385  -17.782  -18.728  -5.847   2.343   0.566  H9     V2J  39  
V2J  H10    H10  H  0  1  N  N  N  43.193  -19.724  -17.998  -6.853   1.083  -1.076  H10    V2J  40  
V2J  H11    H11  H  0  1  N  N  N  40.037  -20.290  -20.222  -9.511  -0.120   1.177  H11    V2J  41  
V2J  H12    H12  H  0  1  N  N  N  37.917  -23.007  -15.858  -0.590   0.025  -1.657  H12    V2J  42  
V2J  H13    H13  H  0  1  N  N  N  39.639  -23.051  -16.368  -1.517   1.413  -1.038  H13    V2J  43  
V2J  H14    H14  H  0  1  N  N  N  37.695  -24.273  -17.758   0.139   1.592   0.866  H14    V2J  44  
V2J  H15    H15  H  0  1  N  N  N  40.312  -23.176  -18.483   0.856   1.937  -2.051  H15    V2J  45  
V2J  H16    H16  H  0  1  N  N  N  39.802  -25.425  -18.146   1.204   4.140  -1.196  H16    V2J  46  
V2J  H17    H17  H  0  1  N  N  N  39.595  -22.031  -20.289   3.098   1.529  -1.684  H17    V2J  47  
V2J  H18    H18  H  0  1  N  N  N  40.332  -23.923  -21.448   3.280   3.763  -0.855  H18    V2J  48  
V2J  H19    H19  H  0  1  N  N  N  37.056  -23.675  -20.369   2.713   1.124   1.288  H19    V2J  49  
V2J  H20    H20  H  0  1  N  N  N  36.531  -17.310  -24.331   7.354  -3.106  -0.785  H20    V2J  50  
V2J  H21    H21  H  0  1  N  N  N  36.586  -18.847  -24.880   8.739  -2.494  -0.058  H21    V2J  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V2J  N6     C6     SING  N  N   1  
V2J  C6     C5     DOUB  Y  N   2  
V2J  C6     N1     SING  Y  N   3  
V2J  N7     C5     SING  Y  N   4  
V2J  N7     C8     DOUB  Y  N   5  
V2J  C5     C4     SING  Y  N   6  
V2J  N1     C2     DOUB  Y  N   7  
V2J  C8     N9     SING  Y  N   8  
V2J  "O2'"  "C2'"  SING  N  N   9  
V2J  C4     N9     SING  Y  N  10  
V2J  C4     N3     DOUB  Y  N  11  
V2J  N9     "C1'"  SING  N  N  12  
V2J  C2     N3     SING  Y  N  13  
V2J  "C2'"  "C1'"  SING  N  N  14  
V2J  "C2'"  "C3'"  SING  N  N  15  
V2J  "C1'"  "O4'"  SING  N  N  16  
V2J  OX     C      DOUB  N  N  17  
V2J  O      C      SING  N  N  18  
V2J  C      CB     SING  N  N  19  
V2J  "O3'"  "C3'"  SING  N  N  20  
V2J  "C3'"  "C4'"  SING  N  N  21  
V2J  "O4'"  "C4'"  SING  N  N  22  
V2J  "C4'"  "C5'"  SING  N  N  23  
V2J  CB     CG     SING  N  N  24  
V2J  CB     CA     SING  N  N  25  
V2J  CG     CD     SING  N  N  26  
V2J  CD     N      SING  N  N  27  
V2J  "O5'"  "C5'"  SING  N  N  28  
V2J  "O5'"  PA     SING  N  N  29  
V2J  CA     N      SING  N  N  30  
V2J  N      PA     SING  N  N  31  
V2J  PA     O2A    DOUB  N  N  32  
V2J  PA     O1A    SING  N  N  33  
V2J  C8     H1     SING  N  N  34  
V2J  C2     H2     SING  N  N  35  
V2J  O1A    H3     SING  N  N  36  
V2J  CA     H4     SING  N  N  37  
V2J  CA     H5     SING  N  N  38  
V2J  CD     H6     SING  N  N  39  
V2J  CD     H7     SING  N  N  40  
V2J  CG     H8     SING  N  N  41  
V2J  CG     H9     SING  N  N  42  
V2J  CB     H10    SING  N  N  43  
V2J  O      H11    SING  N  N  44  
V2J  "C5'"  H12    SING  N  N  45  
V2J  "C5'"  H13    SING  N  N  46  
V2J  "C4'"  H14    SING  N  N  47  
V2J  "C3'"  H15    SING  N  N  48  
V2J  "O3'"  H16    SING  N  N  49  
V2J  "C2'"  H17    SING  N  N  50  
V2J  "O2'"  H18    SING  N  N  51  
V2J  "C1'"  H19    SING  N  N  52  
V2J  N6     H20    SING  N  N  53  
V2J  N6     H21    SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V2J  SMILES            ACDLabs               12.01  "c21n(cnc1c(ncn2)N)C4C(C(C(COP(=O)(O)N3CC(CC3)C(=O)O)O4)O)O"  
V2J  InChI             InChI                 1.03   "InChI=1S/C15H21N6O8P/c16-12-9-13(18-5-17-12)21(6-19-9)14-11(23)10(22)8(29-14)4-28-30(26,27)20-2-1-7(3-20)15(24)25/h5-8,10-11,14,22-23H,1-4H2,(H,24,25)(H,26,27)(H2,16,17,18)/t7-,8+,10+,11+,14+/m0/s1"  
V2J  InChIKey          InChI                 1.03   XUGWBNVYRBVAFE-TWBCTODHSA-N  
V2J  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)N4CC[C@@H](C4)C(O)=O)[C@@H](O)[C@H]3O"  
V2J  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)N4CC[CH](C4)C(O)=O)[CH](O)[CH]3O"  
V2J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(N4CC[C@@H](C4)C(=O)O)O)O)O)N"  
V2J  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(N4CCC(C4)C(=O)O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V2J  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-[(S)-[(3S)-3-carboxypyrrolidin-1-yl](hydroxy)phosphoryl]adenosine"  
V2J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{S})-1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]pyrrolidine-3-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V2J  "Create component"  2020-06-19  RCSB  
V2J  "Initial release"   2021-03-17  RCSB  
##
