data_5RK
# 
_chem_comp.id                                    5RK 
_chem_comp.name                                  "(2R,3R,4R,5S)-1-[(4-{[4-(furan-2-yl)-2-methylanilino]methyl}phenyl)methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-23 
_chem_comp.pdbx_modified_date                    2022-07-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        438.516 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5RK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7REV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5RK N1  N1  N 0 1 N N N -35.316 -30.013 -69.051 4.553   -0.498 -0.109 N1  5RK 1  
5RK C4  C1  C 0 1 N N S -34.452 -32.163 -70.093 4.519   1.915  -0.532 C4  5RK 2  
5RK C5  C2  C 0 1 N N N -35.623 -31.413 -69.358 4.126   0.534  -1.063 C5  5RK 3  
5RK C6  C3  C 0 1 N N N -33.656 -28.430 -68.247 6.417   -1.612 1.022  C6  5RK 4  
5RK C7  C4  C 0 1 N N N -36.305 -29.282 -68.704 4.071   -1.824 -0.518 C7  5RK 5  
5RK C8  C5  C 0 1 Y N N -36.974 -29.670 -67.329 2.564   -1.832 -0.521 C8  5RK 6  
5RK C10 C6  C 0 1 Y N N -36.857 -29.678 -64.876 0.490   -2.201 0.618  C10 5RK 7  
5RK C13 C7  C 0 1 Y N N -38.186 -30.399 -67.246 1.873   -1.483 -1.666 C13 5RK 8  
5RK C15 C8  C 0 1 Y N N -40.684 -29.354 -63.133 -3.572  -0.290 -0.044 C15 5RK 9  
5RK C17 C9  C 0 1 Y N N -42.729 -28.058 -63.122 -5.391  1.199  0.431  C17 5RK 10 
5RK C20 C10 C 0 1 Y N N -39.946 -28.185 -62.903 -4.472  -1.302 -0.359 C20 5RK 11 
5RK C21 C11 C 0 1 N N N -42.889 -30.555 -63.489 -3.057  2.053  0.690  C21 5RK 12 
5RK C22 C12 C 0 1 Y N N -42.786 -25.551 -62.790 -7.751  0.439  0.198  C22 5RK 13 
5RK C24 C13 C 0 1 Y N N -44.444 -24.010 -62.522 -9.960  0.206  0.130  C24 5RK 14 
5RK C1  C14 C 0 1 N N R -34.030 -29.903 -68.337 6.012   -0.496 0.057  C1  5RK 15 
5RK C11 C15 C 0 1 Y N N -38.056 -30.390 -64.787 -0.200  -1.847 -0.526 C11 5RK 16 
5RK C12 C16 C 0 1 Y N N -38.721 -30.767 -65.972 0.491   -1.490 -1.669 C12 5RK 17 
5RK C14 C17 C 0 1 N N N -38.582 -30.770 -63.377 -1.707  -1.850 -0.528 C14 5RK 18 
5RK C16 C18 C 0 1 Y N N -42.074 -29.287 -63.241 -4.036  0.959  0.350  C16 5RK 19 
5RK C18 C19 C 0 1 Y N N -42.009 -26.887 -62.888 -6.298  0.185  0.114  C18 5RK 20 
5RK C19 C20 C 0 1 Y N N -40.605 -26.952 -62.790 -5.828  -1.069 -0.281 C19 5RK 21 
5RK C2  C21 C 0 1 N N R -32.908 -30.647 -69.188 6.461   0.854  0.621  C2  5RK 22 
5RK C23 C22 C 0 1 Y N N -44.146 -25.419 -62.421 -8.735  -0.457 -0.082 C23 5RK 23 
5RK C25 C23 C 0 1 Y N N -43.233 -23.426 -62.943 -9.667  1.458  0.532  C25 5RK 24 
5RK C3  C24 C 0 1 N N R -33.202 -32.066 -69.380 6.037   1.969  -0.339 C3  5RK 25 
5RK C9  C25 C 0 1 Y N N -36.325 -29.326 -66.123 1.873   -2.193 0.620  C9  5RK 26 
5RK N2  N2  N 0 1 N N N -40.026 -30.659 -63.261 -2.198  -0.531 -0.118 N2  5RK 27 
5RK O1  O1  O 0 1 N N N -34.763 -33.541 -70.250 4.122   2.917  -1.470 O1  5RK 28 
5RK O2  O2  O 0 1 N N N -32.161 -32.712 -70.236 6.403   3.236  0.210  O2  5RK 29 
5RK O3  O3  O 0 1 N N N -31.595 -30.453 -68.647 7.883   0.862  0.763  O3  5RK 30 
5RK O4  O4  O 0 1 N N N -33.775 -27.933 -69.556 5.858   -1.352 2.312  O4  5RK 31 
5RK O5  O5  O 0 1 Y N N -42.311 -24.355 -63.089 -8.331  1.596  0.569  O5  5RK 32 
5RK H2  H2  H 0 1 N N N -34.336 -31.701 -71.084 4.024   2.092  0.423  H2  5RK 33 
5RK H3  H3  H 0 1 N N N -36.514 -31.441 -70.003 4.611   0.363  -2.024 H3  5RK 34 
5RK H4  H4  H 0 1 N N N -35.836 -31.938 -68.415 3.044   0.487  -1.188 H4  5RK 35 
5RK H5  H5  H 0 1 N N N -32.623 -28.317 -67.885 6.044   -2.567 0.651  H5  5RK 36 
5RK H6  H6  H 0 1 N N N -34.342 -27.900 -67.570 7.503   -1.651 1.098  H6  5RK 37 
5RK H7  H7  H 0 1 N N N -35.951 -28.243 -68.630 4.438   -2.051 -1.519 H7  5RK 38 
5RK H8  H8  H 0 1 N N N -37.073 -29.353 -69.489 4.437   -2.575 0.182  H8  5RK 39 
5RK H9  H9  H 0 1 N N N -36.335 -29.396 -63.974 -0.050  -2.479 1.510  H9  5RK 40 
5RK H10 H10 H 0 1 N N N -38.708 -30.678 -68.149 2.414   -1.205 -2.559 H10 5RK 41 
5RK H11 H11 H 0 1 N N N -43.804 -28.015 -63.212 -5.751  2.170  0.736  H11 5RK 42 
5RK H12 H12 H 0 1 N N N -38.871 -28.233 -62.813 -4.108  -2.272 -0.664 H12 5RK 43 
5RK H13 H13 H 0 1 N N N -43.171 -31.004 -62.525 -2.824  2.625  -0.208 H13 5RK 44 
5RK H14 H14 H 0 1 N N N -43.797 -30.302 -64.055 -3.496  2.714  1.438  H14 5RK 45 
5RK H15 H15 H 0 1 N N N -42.285 -31.272 -64.065 -2.143  1.612  1.087  H15 5RK 46 
5RK H16 H16 H 0 1 N N N -45.383 -23.516 -62.320 -10.948 -0.212 0.002  H16 5RK 47 
5RK H17 H17 H 0 1 N N N -34.090 -30.349 -67.333 6.488   -0.662 -0.910 H17 5RK 48 
5RK H18 H18 H 0 1 N N N -39.638 -31.336 -65.917 -0.049  -1.217 -2.564 H18 5RK 49 
5RK H19 H19 H 0 1 N N N -38.292 -31.809 -63.163 -2.069  -2.077 -1.530 H19 5RK 50 
5RK H20 H20 H 0 1 N N N -38.118 -30.100 -62.638 -2.070  -2.605 0.169  H20 5RK 51 
5RK H21 H21 H 0 1 N N N -40.034 -26.050 -62.627 -6.526  -1.855 -0.526 H21 5RK 52 
5RK H22 H22 H 0 1 N N N -32.928 -30.176 -70.182 5.997   1.014  1.594  H22 5RK 53 
5RK H23 H23 H 0 1 N N N -44.821 -26.209 -62.125 -8.602  -1.480 -0.404 H23 5RK 54 
5RK H24 H24 H 0 1 N N N -43.083 -22.371 -63.120 -10.386 2.225  0.778  H24 5RK 55 
5RK H25 H25 H 0 1 N N N -33.265 -32.581 -68.410 6.532   1.830  -1.300 H25 5RK 56 
5RK H26 H26 H 0 1 N N N -35.395 -28.778 -66.163 2.412   -2.470 1.514  H26 5RK 57 
5RK H27 H27 H 0 1 N N N -40.409 -31.090 -64.078 -1.570  0.174  0.101  H27 5RK 58 
5RK H28 H28 H 0 1 N N N -35.585 -33.629 -70.718 3.170   2.940  -1.641 H28 5RK 59 
5RK H29 H29 H 0 1 N N N -31.319 -32.668 -69.799 6.160   3.990  -0.344 H29 5RK 60 
5RK H30 H30 H 0 1 N N N -31.433 -29.524 -68.534 8.238   1.689  1.117  H30 5RK 61 
5RK H31 H31 H 0 1 N N N -33.553 -27.009 -69.566 6.074   -2.021 2.976  H31 5RK 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5RK O1  C4  SING N N 1  
5RK O2  C3  SING N N 2  
5RK C4  C3  SING N N 3  
5RK C4  C5  SING N N 4  
5RK O4  C6  SING N N 5  
5RK C3  C2  SING N N 6  
5RK C5  N1  SING N N 7  
5RK C2  O3  SING N N 8  
5RK C2  C1  SING N N 9  
5RK N1  C7  SING N N 10 
5RK N1  C1  SING N N 11 
5RK C7  C8  SING N N 12 
5RK C1  C6  SING N N 13 
5RK C8  C13 DOUB Y N 14 
5RK C8  C9  SING Y N 15 
5RK C13 C12 SING Y N 16 
5RK C9  C10 DOUB Y N 17 
5RK C12 C11 DOUB Y N 18 
5RK C10 C11 SING Y N 19 
5RK C11 C14 SING N N 20 
5RK C21 C16 SING N N 21 
5RK C14 N2  SING N N 22 
5RK N2  C15 SING N N 23 
5RK C16 C15 DOUB Y N 24 
5RK C16 C17 SING Y N 25 
5RK C15 C20 SING Y N 26 
5RK C17 C18 DOUB Y N 27 
5RK O5  C25 SING Y N 28 
5RK O5  C22 SING Y N 29 
5RK C25 C24 DOUB Y N 30 
5RK C20 C19 DOUB Y N 31 
5RK C18 C19 SING Y N 32 
5RK C18 C22 SING N N 33 
5RK C22 C23 DOUB Y N 34 
5RK C24 C23 SING Y N 35 
5RK C4  H2  SING N N 36 
5RK C5  H3  SING N N 37 
5RK C5  H4  SING N N 38 
5RK C6  H5  SING N N 39 
5RK C6  H6  SING N N 40 
5RK C7  H7  SING N N 41 
5RK C7  H8  SING N N 42 
5RK C10 H9  SING N N 43 
5RK C13 H10 SING N N 44 
5RK C17 H11 SING N N 45 
5RK C20 H12 SING N N 46 
5RK C21 H13 SING N N 47 
5RK C21 H14 SING N N 48 
5RK C21 H15 SING N N 49 
5RK C24 H16 SING N N 50 
5RK C1  H17 SING N N 51 
5RK C12 H18 SING N N 52 
5RK C14 H19 SING N N 53 
5RK C14 H20 SING N N 54 
5RK C19 H21 SING N N 55 
5RK C2  H22 SING N N 56 
5RK C23 H23 SING N N 57 
5RK C25 H24 SING N N 58 
5RK C3  H25 SING N N 59 
5RK C9  H26 SING N N 60 
5RK N2  H27 SING N N 61 
5RK O1  H28 SING N N 62 
5RK O2  H29 SING N N 63 
5RK O3  H30 SING N N 64 
5RK O4  H31 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5RK SMILES           ACDLabs              12.01 "OCC1C(O)C(O)C(O)CN1Cc1ccc(cc1)CNc1ccc(cc1C)c1ccco1"                                                                                                                                  
5RK InChI            InChI                1.03  "InChI=1S/C25H30N2O5/c1-16-11-19(23-3-2-10-32-23)8-9-20(16)26-12-17-4-6-18(7-5-17)13-27-14-22(29)25(31)24(30)21(27)15-28/h2-11,21-22,24-26,28-31H,12-15H2,1H3/t21-,22+,24-,25-/m1/s1" 
5RK InChIKey         InChI                1.03  KMBXDPSROWUABB-PEISPCAHSA-N                                                                                                                                                           
5RK SMILES_CANONICAL CACTVS               3.385 "Cc1cc(ccc1NCc2ccc(CN3C[C@H](O)[C@@H](O)[C@H](O)[C@H]3CO)cc2)c4occc4"                                                                                                                 
5RK SMILES           CACTVS               3.385 "Cc1cc(ccc1NCc2ccc(CN3C[CH](O)[CH](O)[CH](O)[CH]3CO)cc2)c4occc4"                                                                                                                      
5RK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NCc2ccc(cc2)CN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O)c4ccco4"                                                                                                                
5RK SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NCc2ccc(cc2)CN3CC(C(C(C3CO)O)O)O)c4ccco4"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5RK "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-1-[(4-{[4-(furan-2-yl)-2-methylanilino]methyl}phenyl)methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol"                    
5RK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[[4-[[[4-(furan-2-yl)-2-methyl-phenyl]amino]methyl]phenyl]methyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5RK "Create component" 2021-07-23 RCSB 
5RK "Initial release"  2022-08-03 RCSB 
# 
