data_7OK
#

_chem_comp.id                                   7OK
_chem_comp.name                                 "N-hydroxycytidine 5'-(dihydrogen phosphate) tautomer"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C9 H14 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id              C
_chem_comp.pdbx_synonyms                        "[(2R,3S,4R,5R)-5-[(4E)-4-hydroxyimino-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-11
_chem_comp.pdbx_modified_date                   2021-08-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.196
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7OK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OZU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7OK  "O5'"   O1   O  0  1  N  N  N  87.806  105.631  110.950  -3.051   0.301  -0.542  "O5'"   7OK   1  
7OK  "C5'"   C1   C  0  1  N  N  N  87.538  106.577  109.878  -2.463  -0.679   0.317  "C5'"   7OK   2  
7OK  "C4'"   C2   C  0  1  N  N  R  88.220  106.017  108.622  -1.340  -1.402  -0.429  "C4'"   7OK   3  
7OK  "O4'"   O2   O  0  1  N  N  N  89.168  105.197  108.963  -0.264  -0.488  -0.698  "O4'"   7OK   4  
7OK  "C3'"   C3   C  0  1  N  N  S  87.225  105.081  107.832  -0.771  -2.532   0.451  "C3'"   7OK   5  
7OK  "O3'"   O3   O  0  1  N  N  N  86.306  105.787  107.066  -0.931  -3.797  -0.194  "O3'"   7OK   6  
7OK  "C2'"   C4   C  0  1  N  N  R  88.185  104.268  106.997   0.730  -2.181   0.596  "C2'"   7OK   7  
7OK  "O2'"   O4   O  0  1  N  N  N  88.652  105.039  105.910   1.540  -3.355   0.496  "O2'"   7OK   8  
7OK  "C1'"   C5   C  0  1  N  N  R  89.198  104.016  107.846   0.963  -1.245  -0.617  "C1'"   7OK   9  
7OK  OAC     O5   O  0  1  N  N  N  88.402   99.202  112.059   6.386   2.042  -0.404  OAC     7OK  10  
7OK  C5      C6   C  0  1  N  N  N  88.733  101.740  110.748   4.282   0.329  -0.949  C5      7OK  11  
7OK  P       P1   P  0  1  N  N  N  87.689  106.155  112.547  -4.267   1.252  -0.085  P       7OK  12  
7OK  OP1     O6   O  0  1  N  N  N  86.670  107.457  112.645  -5.389   0.418   0.402  OP1     7OK  13  
7OK  OP3     O7   O  0  1  N  Y  N  87.153  104.906  113.507  -3.770   2.227   1.096  OP3     7OK  14  
7OK  N1      N1   N  0  1  N  N  N  89.215  102.813  108.721   2.102  -0.356  -0.371  N1      7OK  15  
7OK  C6      C7   C  0  1  N  N  N  88.716  102.872  109.956   3.225  -0.475  -1.156  C6      7OK  16  
7OK  C4      C8   C  0  1  N  N  N  89.276  100.574  110.213   4.205   1.323   0.132  C4      7OK  17  
7OK  N4      N2   N  0  1  N  N  N  89.314   99.374  111.007   5.207   2.124   0.376  N4      7OK  18  
7OK  N3      N3   N  0  1  N  N  N  89.758  100.571  108.975   3.039   1.389   0.888  N3      7OK  19  
7OK  C2      C9   C  0  1  N  N  N  89.730  101.671  108.229   2.021   0.552   0.614  C2      7OK  20  
7OK  O2      O8   O  0  1  N  N  N  90.163  101.650  107.130   1.005   0.616   1.280  O2      7OK  21  
7OK  OP2     O9   O  0  1  N  N  N  89.150  106.586  113.001  -4.759   2.134  -1.338  OP2     7OK  22  
7OK  "H5'"   H1   H  0  1  N  N  N  87.955  107.564  110.129  -2.056  -0.189   1.201  "H5'"   7OK  23  
7OK  "H5''"  H2   H  0  0  N  N  N  86.454  106.668  109.713  -3.222  -1.400   0.618  "H5''"  7OK  24  
7OK  "H4'"   H3   H  0  1  N  N  N  88.550  106.839  107.970  -1.720  -1.813  -1.364  "H4'"   7OK  25  
7OK  "H3'"   H4   H  0  1  N  N  N  86.719  104.422  108.552  -1.257  -2.538   1.426  "H3'"   7OK  26  
7OK  "HO3'"  H5   H  0  0  N  Y  N  85.728  106.279  107.638  -0.590  -4.545   0.315  "HO3'"  7OK  27  
7OK  "H2'"   H6   H  0  1  N  N  N  87.691  103.348  106.650   0.919  -1.659   1.533  "H2'"   7OK  28  
7OK  "HO2'"  H7   H  0  0  N  N  N  89.255  104.521  105.390   1.366  -4.012   1.184  "HO2'"  7OK  29  
7OK  "H1'"   H8   H  0  1  N  N  N  90.166  104.088  107.328   1.120  -1.825  -1.526  "H1'"   7OK  30  
7OK  H5      H10  H  0  1  N  N  N  88.337  101.759  111.753   5.168   0.244  -1.560  H5      7OK  31  
7OK  HOP3    H11  H  0  0  N  Y  N  86.350  105.164  113.945  -3.035   2.803   0.847  HOP3    7OK  32  
7OK  H6      H12  H  0  1  N  N  N  88.303  103.796  110.334   3.257  -1.217  -1.941  H6      7OK  33  
7OK  HOP2    H14  H  0  0  N  N  N  89.150  107.506  113.239  -5.491   2.732  -1.135  HOP2    7OK  34  
7OK  H2      H13  H  0  1  N  N  N  90.147   99.730  108.599   2.960   2.034   1.607  H2      7OK  35  
7OK  H1      H15  H  0  1  N  N  N  88.558   98.365  112.480   7.072   2.675  -0.149  H1      7OK  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7OK  "O2'"  "C2'"   SING  N  N   1  
7OK  "C2'"  "C3'"   SING  N  N   2  
7OK  "C2'"  "C1'"   SING  N  N   3  
7OK  "O3'"  "C3'"   SING  N  N   4  
7OK  O2     C2      DOUB  N  N   5  
7OK  "C3'"  "C4'"   SING  N  N   6  
7OK  "C1'"  N1      SING  N  N   7  
7OK  "C1'"  "O4'"   SING  N  N   8  
7OK  C2     N1      SING  N  N   9  
7OK  C2     N3      SING  N  N  10  
7OK  "C4'"  "O4'"   SING  N  N  11  
7OK  "C4'"  "C5'"   SING  N  N  12  
7OK  N1     C6      SING  N  N  13  
7OK  N3     C4      SING  N  N  14  
7OK  "C5'"  "O5'"   SING  N  N  15  
7OK  C6     C5      DOUB  N  N  16  
7OK  C4     C5      SING  N  N  17  
7OK  C4     N4      DOUB  N  E  18  
7OK  "O5'"  P       SING  N  N  19  
7OK  N4     OAC     SING  N  N  20  
7OK  P      OP1     DOUB  N  N  21  
7OK  P      OP3     SING  N  N  22  
7OK  P      OP2     SING  N  N  23  
7OK  "C5'"  "H5'"   SING  N  N  24  
7OK  "C5'"  "H5''"  SING  N  N  25  
7OK  "C4'"  "H4'"   SING  N  N  26  
7OK  "C3'"  "H3'"   SING  N  N  27  
7OK  "O3'"  "HO3'"  SING  N  N  28  
7OK  "C2'"  "H2'"   SING  N  N  29  
7OK  "O2'"  "HO2'"  SING  N  N  30  
7OK  "C1'"  "H1'"   SING  N  N  31  
7OK  C5     H5      SING  N  N  32  
7OK  OP3    HOP3    SING  N  N  33  
7OK  C6     H6      SING  N  N  34  
7OK  OP2    HOP2    SING  N  N  35  
7OK  N3     H2      SING  N  N  36  
7OK  OAC    H1      SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7OK  InChI             InChI                 1.03   "InChI=1S/C9H14N3O9P/c13-6-4(3-20-22(17,18)19)21-8(7(6)14)12-2-1-5(11-16)10-9(12)15/h1-2,4,6-8,13-14,16H,3H2,(H,10,11,15)(H2,17,18,19)/t4-,6-,7-,8-/m1/s1"  
7OK  InChIKey          InChI                 1.03   DYOUVDKCXLKHKY-XVFCMESISA-N  
7OK  SMILES_CANONICAL  CACTVS                3.385  "O\N=C/1NC(=O)N(C=C/1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"  
7OK  SMILES            CACTVS                3.385  "ON=C1NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"  
7OK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C\1=CN(C(=O)N/C1=N/O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"  
7OK  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=CN(C(=O)NC1=NO)C2C(C(C(O2)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          7OK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-[(4~{E})-4-hydroxyimino-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     7OK
_pdbx_chem_comp_synonyms.name        "[(2R,3S,4R,5R)-5-[(4E)-4-hydroxyimino-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7OK  "Create component"  2021-08-11  PDBE  
7OK  "Modify atom id"    2021-08-11  PDBE  
7OK  "Initial release"   2021-08-18  RCSB  
##
