data_A1AMK
# 
_chem_comp.id                                    A1AMK 
_chem_comp.name                                  "4-{[(1R)-1-(4,4-dioxo-3,4-dihydro-2H-1,4lambda~6~-benzoxathiin-6-yl)-2-methylpropyl]amino}-N-ethyl-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H25 N5 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-11 
_chem_comp.pdbx_modified_date                    2024-05-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        443.519 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AMK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7H0I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AMK N1  N1  N 0 1 N N N N N N 9.098  -9.177  13.588 0.492  -0.771 0.416  N1  A1AMK 1  
A1AMK N3  N2  N 0 1 Y N N N N N 6.650  -8.309  16.841 3.637  -2.833 -1.216 N3  A1AMK 2  
A1AMK C4  C1  C 0 1 Y N N N N N 6.083  -10.081 13.783 3.370  0.384  0.192  C4  A1AMK 3  
A1AMK C5  C2  C 0 1 Y N N N N N 6.930  -9.301  14.627 2.837  -0.862 -0.197 C5  A1AMK 4  
A1AMK C6  C3  C 0 1 Y N N N N N 8.280  -8.881  14.616 1.560  -1.453 -0.131 C6  A1AMK 5  
A1AMK C7  C4  C 0 1 N N S N N N 10.452 -8.674  13.411 -0.828 -1.403 0.475  C7  A1AMK 6  
A1AMK C8  C5  C 0 1 Y N N N N N 10.503 -7.563  12.377 -1.893 -0.338 0.521  C8  A1AMK 7  
A1AMK C10 C6  C 0 1 Y N N N N N 10.975 -5.259  11.789 -2.681 1.773  1.328  C10 A1AMK 8  
A1AMK C13 C7  C 0 1 Y N N N N N 9.997  -7.757  11.089 -3.067 -0.498 -0.192 C13 A1AMK 9  
A1AMK C15 C8  C 0 1 N N N N N N 10.493 -4.510  8.265  -5.787 2.813  -0.267 C15 A1AMK 10 
A1AMK C17 C9  C 0 1 N N N N N N 11.364 -10.927 14.218 -0.842 -1.383 2.973  C17 A1AMK 11 
A1AMK C20 C10 C 0 1 Y N N N N N 6.190  -8.987  15.771 3.892  -1.606 -0.766 C20 A1AMK 12 
A1AMK O2  O1  O 0 1 N N N N N N 10.069 -8.031  7.969  -5.133 0.564  -2.434 O2  A1AMK 13 
A1AMK S   S1  S 0 1 N N N N N N 9.296  -7.021  8.623  -5.518 0.255  -1.101 S   A1AMK 14 
A1AMK O1  O2  O 0 1 N N N N N N 7.900  -7.269  8.827  -5.978 -1.043 -0.749 O1  A1AMK 15 
A1AMK C14 C11 C 0 1 N N N N N N 9.468  -5.473  7.815  -6.628 1.536  -0.437 C14 A1AMK 16 
A1AMK O3  O3  O 0 1 N N N N N N 10.578 -4.356  9.687  -4.799 2.592  0.725  O3  A1AMK 17 
A1AMK C11 C12 C 0 1 Y N N N N N 10.494 -5.459  10.504 -3.869 1.618  0.613  C11 A1AMK 18 
A1AMK C9  C13 C 0 1 Y N N N N N 10.974 -6.291  12.716 -1.704 0.802  1.280  C9  A1AMK 19 
A1AMK C12 C14 C 0 1 Y N N N N N 9.973  -6.722  10.157 -4.045 0.477  -0.151 C12 A1AMK 20 
A1AMK C16 C15 C 0 1 N N N N N N 11.402 -9.862  13.095 -0.921 -2.272 1.730  C16 A1AMK 21 
A1AMK C18 C16 C 0 1 N N N N N N 12.833 -9.397  12.862 -2.251 -3.029 1.729  C18 A1AMK 22 
A1AMK N2  N3  N 0 1 Y N N N N N 8.754  -8.184  15.672 1.409  -2.685 -0.608 N2  A1AMK 23 
A1AMK C19 C17 C 0 1 Y N N N N N 7.914  -7.926  16.677 2.427  -3.343 -1.132 C19 A1AMK 24 
A1AMK N4  N4  N 0 1 Y N N N N N 4.924  -9.493  15.622 5.013  -0.828 -0.716 N4  A1AMK 25 
A1AMK C3  C18 C 0 1 Y N N N N N 4.856  -10.153 14.402 4.692  0.385  -0.131 C3  A1AMK 26 
A1AMK C2  C19 C 0 1 N N N N N N 3.617  -10.838 13.945 5.627  1.493  0.102  C2  A1AMK 27 
A1AMK O   O4  O 0 1 N N N N N N 3.581  -11.360 12.824 5.235  2.520  0.626  O   A1AMK 28 
A1AMK N   N5  N 0 1 N N N N N N 2.570  -10.859 14.786 6.918  1.374  -0.264 N   A1AMK 29 
A1AMK C1  C20 C 0 1 N N N N N N 1.342  -11.634 14.520 7.850  2.480  -0.031 C1  A1AMK 30 
A1AMK C   C21 C 0 1 N N N N N N 1.536  -13.114 14.791 9.241  2.089  -0.535 C   A1AMK 31 
A1AMK H9  H1  H 0 1 N N N N N N 9.186  -10.173 13.599 0.617  0.126  0.764  H9  A1AMK 32 
A1AMK H8  H2  H 0 1 N N N N N N 6.354  -10.529 12.838 2.828  1.191  0.663  H8  A1AMK 33 
A1AMK H   H3  H 0 1 N N N N N N 10.784 -8.245  14.368 -0.973 -2.024 -0.409 H   A1AMK 34 
A1AMK H11 H4  H 0 1 N N N N N N 11.355 -4.288  12.072 -2.524 2.662  1.920  H11 A1AMK 35 
A1AMK H12 H5  H 0 1 N N N N N N 9.617  -8.729  10.811 -3.219 -1.389 -0.783 H12 A1AMK 36 
A1AMK H15 H6  H 0 1 N N N N N N 11.472 -4.852  7.897  -5.301 3.057  -1.212 H15 A1AMK 37 
A1AMK H16 H7  H 0 1 N N N N N N 10.259 -3.529  7.826  -6.432 3.638  0.035  H16 A1AMK 38 
A1AMK H18 H8  H 0 1 N N N N N N 12.046 -11.752 13.964 -1.666 -0.670 2.963  H18 A1AMK 39 
A1AMK H20 H9  H 0 1 N N N N N N 11.679 -10.470 15.168 -0.909 -2.003 3.868  H20 A1AMK 40 
A1AMK H19 H10 H 0 1 N N N N N N 10.340 -11.315 14.320 0.105  -0.844 2.974  H19 A1AMK 41 
A1AMK H13 H11 H 0 1 N N N N N N 9.680  -5.690  6.758  -7.025 1.221  0.529  H13 A1AMK 42 
A1AMK H14 H12 H 0 1 N N N N N N 8.497  -4.963  7.897  -7.446 1.719  -1.134 H14 A1AMK 43 
A1AMK H10 H13 H 0 1 N N N N N N 11.343 -6.109  13.715 -0.788 0.931  1.838  H10 A1AMK 44 
A1AMK H17 H14 H 0 1 N N N N N N 11.044 -10.338 12.170 -0.097 -2.986 1.740  H17 A1AMK 45 
A1AMK H22 H15 H 0 1 N N N N N N 13.470 -10.266 12.642 -3.075 -2.316 1.719  H22 A1AMK 46 
A1AMK H21 H16 H 0 1 N N N N N N 12.858 -8.700  12.012 -2.307 -3.663 0.843  H21 A1AMK 47 
A1AMK H23 H17 H 0 1 N N N N N N 13.205 -8.889  13.764 -2.318 -3.649 2.623  H23 A1AMK 48 
A1AMK H24 H18 H 0 1 N N N N N N 8.319  -7.318  17.473 2.259  -4.341 -1.508 H24 A1AMK 49 
A1AMK H1  H19 H 0 1 N N N N N N 4.177  -9.402  16.280 5.892  -1.084 -1.038 H1  A1AMK 50 
A1AMK H7  H20 H 0 1 N N N N N N 2.625  -10.326 15.630 7.230  0.556  -0.682 H7  A1AMK 51 
A1AMK H6  H21 H 0 1 N N N N N N 1.058  -11.500 13.466 7.506  3.365  -0.567 H6  A1AMK 52 
A1AMK H5  H22 H 0 1 N N N N N N 0.536  -11.257 15.167 7.898  2.697  1.036  H5  A1AMK 53 
A1AMK H4  H23 H 0 1 N N N N N N 0.600  -13.652 14.581 9.193  1.873  -1.602 H4  A1AMK 54 
A1AMK H2  H24 H 0 1 N N N N N N 2.336  -13.503 14.144 9.935  2.912  -0.362 H2  A1AMK 55 
A1AMK H3  H25 H 0 1 N N N N N N 1.814  -13.260 15.845 9.586  1.204  0.000  H3  A1AMK 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AMK C   C1  SING N N 1  
A1AMK C1  N   SING N N 2  
A1AMK N   C2  SING N N 3  
A1AMK O   C2  DOUB N N 4  
A1AMK C2  C3  SING N N 5  
A1AMK C3  C4  DOUB Y N 6  
A1AMK C4  C5  SING Y N 7  
A1AMK C5  C6  DOUB Y N 8  
A1AMK C6  N1  SING N N 9  
A1AMK N1  C7  SING N N 10 
A1AMK C7  C8  SING N N 11 
A1AMK C8  C9  DOUB Y N 12 
A1AMK C9  C10 SING Y N 13 
A1AMK C10 C11 DOUB Y N 14 
A1AMK C11 C12 SING Y N 15 
A1AMK C13 C12 DOUB Y N 16 
A1AMK C8  C13 SING Y N 17 
A1AMK C12 S   SING N N 18 
A1AMK O1  S   DOUB N N 19 
A1AMK S   O2  DOUB N N 20 
A1AMK C14 S   SING N N 21 
A1AMK C15 C14 SING N N 22 
A1AMK O3  C15 SING N N 23 
A1AMK C11 O3  SING N N 24 
A1AMK C16 C7  SING N N 25 
A1AMK C17 C16 SING N N 26 
A1AMK C18 C16 SING N N 27 
A1AMK N2  C6  SING Y N 28 
A1AMK C19 N2  DOUB Y N 29 
A1AMK N3  C19 SING Y N 30 
A1AMK C20 N3  DOUB Y N 31 
A1AMK C5  C20 SING Y N 32 
A1AMK N4  C20 SING Y N 33 
A1AMK C3  N4  SING Y N 34 
A1AMK N1  H9  SING N N 35 
A1AMK C4  H8  SING N N 36 
A1AMK C7  H   SING N N 37 
A1AMK C10 H11 SING N N 38 
A1AMK C13 H12 SING N N 39 
A1AMK C15 H15 SING N N 40 
A1AMK C15 H16 SING N N 41 
A1AMK C17 H18 SING N N 42 
A1AMK C17 H20 SING N N 43 
A1AMK C17 H19 SING N N 44 
A1AMK C14 H13 SING N N 45 
A1AMK C14 H14 SING N N 46 
A1AMK C9  H10 SING N N 47 
A1AMK C16 H17 SING N N 48 
A1AMK C18 H22 SING N N 49 
A1AMK C18 H21 SING N N 50 
A1AMK C18 H23 SING N N 51 
A1AMK C19 H24 SING N N 52 
A1AMK N4  H1  SING N N 53 
A1AMK N   H7  SING N N 54 
A1AMK C1  H6  SING N N 55 
A1AMK C1  H5  SING N N 56 
A1AMK C   H4  SING N N 57 
A1AMK C   H2  SING N N 58 
A1AMK C   H3  SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AMK SMILES           ACDLabs              12.01 "CCNC(=O)c1cc2c([NH]1)ncnc2NC(c1ccc2OCCS(=O)(=O)c2c1)C(C)C"                                                                                                                              
A1AMK InChI            InChI                1.06  "InChI=1S/C21H25N5O4S/c1-4-22-21(27)15-10-14-19(25-15)23-11-24-20(14)26-18(12(2)3)13-5-6-16-17(9-13)31(28,29)8-7-30-16/h5-6,9-12,18H,4,7-8H2,1-3H3,(H,22,27)(H2,23,24,25,26)/t18-/m1/s1" 
A1AMK InChIKey         InChI                1.06  DVKLXYXMGYYPLI-GOSISDBHSA-N                                                                                                                                                              
A1AMK SMILES_CANONICAL CACTVS               3.385 "CCNC(=O)c1[nH]c2ncnc(N[C@@H](C(C)C)c3ccc4OCC[S](=O)(=O)c4c3)c2c1"                                                                                                                       
A1AMK SMILES           CACTVS               3.385 "CCNC(=O)c1[nH]c2ncnc(N[CH](C(C)C)c3ccc4OCC[S](=O)(=O)c4c3)c2c1"                                                                                                                         
A1AMK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1cc2c([nH]1)ncnc2N[C@H](c3ccc4c(c3)S(=O)(=O)CCO4)C(C)C"                                                                                                                        
A1AMK SMILES           "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1cc2c([nH]1)ncnc2NC(c3ccc4c(c3)S(=O)(=O)CCO4)C(C)C"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AMK "SYSTEMATIC NAME" ACDLabs              12.01 "4-{[(1R)-1-(4,4-dioxo-3,4-dihydro-2H-1,4lambda~6~-benzoxathiin-6-yl)-2-methylpropyl]amino}-N-ethyl-7H-pyrrolo[2,3-d]pyrimidine-6-carboxamide"                  
A1AMK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(1~{S})-1-[4,4-bis(oxidanylidene)-2,3-dihydro-1,4$l^{6}-benzoxathiin-6-yl]-2-methyl-propyl]amino]-~{N}-ethyl-7~{H}-pyrrolo[2,3-d]pyrimidine-6-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AMK "Create component" 2024-04-11 RCSB 
A1AMK "Initial release"  2024-05-15 RCSB 
# 
