data_B8K
#

_chem_comp.id                                   B8K
_chem_comp.name                                 "7-acetyl, guanosine-5'-monophosphate"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H18 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id              G
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-25
_chem_comp.pdbx_modified_date                   2019-05-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       407.273
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    B8K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6EK0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B8K  N2     N1   N  0  1  N  N  N  234.396  253.071  246.227  -0.893   2.580  -2.767  N2     B8K   1  
B8K  C2     C1   C  0  1  N  N  N  234.571  252.597  247.471  -1.634   1.913  -1.825  C2     B8K   2  
B8K  C8     C2   C  0  1  N  N  N  236.933  251.089  251.149  -2.601  -1.293   1.284  C8     B8K   3  
B8K  N1     N2   N  0  1  N  N  N  233.505  252.408  248.270  -2.878   2.369  -1.513  N1     B8K   4  
B8K  C6     C3   C  0  1  N  N  N  233.599  251.950  249.521  -3.621   1.725  -0.589  C6     B8K   5  
B8K  C5     C4   C  0  1  N  N  N  234.947  251.661  249.996  -3.087   0.588   0.035  C5     B8K   6  
B8K  C4     C5   C  0  1  N  N  N  236.068  251.889  249.082  -1.815   0.163  -0.318  C4     B8K   7  
B8K  N3     N3   N  0  1  N  N  N  235.835  252.360  247.848  -1.128   0.845  -1.249  N3     B8K   8  
B8K  "C1'"  C6   C  0  1  N  N  R  238.521  251.608  249.378  -0.211  -1.703   0.308  "C1'"  B8K   9  
B8K  "C2'"  C7   C  0  1  N  N  R  239.362  252.509  250.249  -0.026  -2.271  -1.116  "C2'"  B8K  10  
B8K  "C3'"  C8   C  0  1  N  N  S  240.750  251.980  249.952   1.488  -2.127  -1.385  "C3'"  B8K  11  
B8K  "C4'"  C9   C  0  1  N  N  R  240.507  250.483  249.836   2.040  -1.488  -0.091  "C4'"  B8K  12  
B8K  "C5'"  C10  C  0  1  N  N  N  240.812  249.669  251.065   3.148  -0.487  -0.423  "C5'"  B8K  13  
B8K  N7     N4   N  0  1  N  N  N  235.497  251.209  251.120  -3.621  -0.270   1.017  N7     B8K  14  
B8K  N9     N5   N  0  1  N  N  N  237.124  251.548  249.787  -1.473  -0.966   0.405  N9     B8K  15  
B8K  "O2'"  O1   O  0  1  N  N  N  239.171  253.862  249.925  -0.417  -3.645  -1.162  "O2'"  B8K  16  
B8K  "O3'"  O2   O  0  1  N  N  N  241.158  252.474  248.683   2.082  -3.408  -1.608  "O3'"  B8K  17  
B8K  "O4'"  O3   O  0  1  N  N  N  239.105  250.335  249.499   0.909  -0.810   0.497  "O4'"  B8K  18  
B8K  "O5'"  O4   O  0  1  N  N  N  239.630  249.258  251.742   3.724   0.005   0.790  "O5'"  B8K  19  
B8K  O6     O5   O  0  1  N  N  N  232.599  251.782  250.223  -4.738   2.126  -0.301  O6     B8K  20  
B8K  OP1    O6   O  0  1  N  N  N  240.260  246.809  251.696   6.055   0.577   0.010  OP1    B8K  21  
B8K  OP3    O7   O  0  1  N  N  N  237.989  247.667  252.660   4.405   2.477   0.208  OP3    B8K  22  
B8K  P      P1   P  0  1  N  N  N  239.101  247.760  251.664   4.922   1.080   0.819  P      B8K  23  
B8K  C71    C11  C  0  1  N  N  N  234.825  250.855  252.275  -4.832  -0.171   1.599  C71    B8K  24  
B8K  C72    C12  C  0  1  N  N  N  233.891  249.686  252.341  -5.300  -1.240   2.552  C72    B8K  25  
B8K  O71    O8   O  0  1  N  N  N  235.028  251.483  253.295  -5.546   0.779   1.355  O71    B8K  26  
B8K  H1     H1   H  0  1  N  N  N  235.187  253.229  245.636  -0.006   2.262  -3.000  H1     B8K  27  
B8K  H2     H2   H  0  1  N  N  N  233.474  253.266  245.891  -1.256   3.366  -3.202  H2     B8K  28  
B8K  H3     H3   H  0  1  N  N  N  237.274  250.055  251.305  -2.289  -1.251   2.328  H3     B8K  29  
B8K  H4     H4   H  0  1  N  N  N  232.597  252.621  247.909  -3.230   3.157  -1.956  H4     B8K  30  
B8K  H5     H5   H  0  1  N  N  N  238.585  251.959  248.338  -0.184  -2.506   1.045  H5     B8K  31  
B8K  H6     H6   H  0  1  N  N  N  239.121  252.322  251.306  -0.600  -1.688  -1.837  H6     B8K  32  
B8K  H7     H7   H  0  1  N  N  N  241.459  252.216  250.760   1.663  -1.472  -2.239  H7     B8K  33  
B8K  H8     H8   H  0  1  N  N  N  241.119  250.100  249.006   2.415  -2.259   0.582  H8     B8K  34  
B8K  H9     H9   H  0  1  N  N  N  241.379  248.775  250.766   3.918  -0.980  -1.016  H9     B8K  35  
B8K  H10    H10  H  0  1  N  N  N  241.420  250.277  251.751   2.729   0.345  -0.989  H10    B8K  36  
B8K  H11    H11  H  0  1  N  N  N  239.712  254.402  250.489  -0.322  -4.052  -2.033  H11    B8K  37  
B8K  H12    H12  H  0  1  N  N  N  241.313  253.409  248.742   1.727  -3.877  -2.375  H12    B8K  38  
B8K  H14    H14  H  0  1  N  N  N  238.158  246.948  253.258   3.661   2.865   0.689  H14    B8K  39  
B8K  H15    H15  H  0  1  N  N  N  233.513  249.575  253.368  -4.498  -1.959   2.714  H15    B8K  40  
B8K  H16    H16  H  0  1  N  N  N  233.047  249.852  251.656  -5.577  -0.784   3.502  H16    B8K  41  
B8K  H17    H17  H  0  1  N  N  N  234.427  248.772  252.047  -6.166  -1.751   2.129  H17    B8K  42  
B8K  H18    H18  H  0  1  N  N  N  237.404  251.747  251.894  -2.990  -2.284   1.048  H18    B8K  43  
B8K  OP2    OP3  O  0  1  N  N  N        ?        ?        ?   5.405   1.304   2.338  OP2    B8K  44  
B8K  H13    H13  H  0  1  N  N  N        ?        ?        ?   6.127   1.941   2.431  H13    B8K  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B8K  N2     C2     SING  N  N   1  
B8K  C2     N3     DOUB  N  N   2  
B8K  C2     N1     SING  N  N   3  
B8K  N3     C4     SING  N  N   4  
B8K  N1     C6     SING  N  N   5  
B8K  "O3'"  "C3'"  SING  N  N   6  
B8K  C4     N9     SING  N  N   7  
B8K  C4     C5     DOUB  N  N   8  
B8K  "C1'"  "O4'"  SING  N  N   9  
B8K  "C1'"  N9     SING  N  N  10  
B8K  "C1'"  "C2'"  SING  N  N  11  
B8K  "O4'"  "C4'"  SING  N  N  12  
B8K  C6     C5     SING  N  N  13  
B8K  C6     O6     DOUB  N  N  14  
B8K  N9     C8     SING  N  N  15  
B8K  "C4'"  "C3'"  SING  N  N  16  
B8K  "C4'"  "C5'"  SING  N  N  17  
B8K  "O2'"  "C2'"  SING  N  N  18  
B8K  "C3'"  "C2'"  SING  N  N  19  
B8K  C5     N7     SING  N  N  20  
B8K  "C5'"  "O5'"  SING  N  N  21  
B8K  N7     C8     SING  N  N  22  
B8K  N7     C71    SING  N  N  23  
B8K  P      OP1    DOUB  N  N  24  
B8K  P      "O5'"  SING  N  N  25  
B8K  P      OP3    SING  N  N  26  
B8K  C71    C72    SING  N  N  27  
B8K  C71    O71    DOUB  N  N  28  
B8K  N2     H1     SING  N  N  29  
B8K  N2     H2     SING  N  N  30  
B8K  C8     H3     SING  N  N  31  
B8K  N1     H4     SING  N  N  32  
B8K  "C1'"  H5     SING  N  N  33  
B8K  "C2'"  H6     SING  N  N  34  
B8K  "C3'"  H7     SING  N  N  35  
B8K  "C4'"  H8     SING  N  N  36  
B8K  "C5'"  H9     SING  N  N  37  
B8K  "C5'"  H10    SING  N  N  38  
B8K  "O2'"  H11    SING  N  N  39  
B8K  "O3'"  H12    SING  N  N  40  
B8K  OP3    H14    SING  N  N  41  
B8K  C72    H15    SING  N  N  42  
B8K  C72    H16    SING  N  N  43  
B8K  C72    H17    SING  N  N  44  
B8K  C8     H18    SING  N  N  45  
B8K  P      OP2    SING  N  N  46  
B8K  OP2    H13    SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B8K  InChI             InChI                 1.03   "InChI=1S/C12H18N5O9P/c1-4(18)16-3-17(9-6(16)10(21)15-12(13)14-9)11-8(20)7(19)5(26-11)2-25-27(22,23)24/h5,7-8,11,19-20H,2-3H2,1H3,(H2,22,23,24)(H3,13,14,15,21)/t5-,7-,8-,11-/m1/s1"  
B8K  InChIKey          InChI                 1.03   DXTUMKLYEDQWDN-IOSLPCCCSA-N  
B8K  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N1CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C3=C1C(=O)NC(=N3)N"  
B8K  SMILES            CACTVS                3.385  "CC(=O)N1CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C3=C1C(=O)NC(=N3)N"  
B8K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"  
B8K  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          B8K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B8K  "Create component"        2017-09-25  EBI   
B8K  "Initial release"         2018-01-24  RCSB  
B8K  "Modify one letter code"  2019-05-06  EBI   
##
