data_LWK
# 
_chem_comp.id                                    LWK 
_chem_comp.name                                  "(3S)-3-[5-(1-benzylpiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H27 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-09 
_chem_comp.pdbx_modified_date                    2023-03-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        417.500 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LWK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7U8F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LWK C1  C1  C 0 1 Y N N -81.438 -97.862  77.168 -0.438 -1.578 0.015  C1  LWK 1  
LWK C2  C2  C 0 1 Y N N -82.569 -97.364  76.532 -0.451 -0.263 0.445  C2  LWK 2  
LWK C3  C3  C 0 1 Y N N -82.449 -96.556  75.392 0.732  0.451  0.540  C3  LWK 3  
LWK C11 C4  C 0 1 N N S -78.346 -94.574  73.120 5.619  -0.796 -0.436 C11 LWK 4  
LWK C13 C5  C 0 1 N N N -78.277 -95.217  71.730 5.981  -0.085 -1.744 C13 LWK 5  
LWK C14 C6  C 0 1 N N N -77.578 -94.307  70.733 5.556  1.383  -1.636 C14 LWK 6  
LWK C15 C7  C 0 1 N N N -78.305 -92.988  70.624 6.197  1.995  -0.419 C15 LWK 7  
LWK C17 C8  C 0 1 N N N -78.915 -93.151  73.015 6.257  -0.067 0.717  C17 LWK 8  
LWK C20 C9  C 0 1 N N N -84.944 -96.646  76.834 -2.689 0.392  -0.404 C20 LWK 9  
LWK C21 C10 C 0 1 N N N -86.302 -97.120  77.380 -4.035 1.006  -0.009 C21 LWK 10 
LWK C23 C11 C 0 1 N N N -85.731 -99.389  76.904 -3.772 0.254  2.279  C23 LWK 11 
LWK C24 C12 C 0 1 N N N -84.341 -99.001  76.411 -2.419 -0.382 1.953  C24 LWK 12 
LWK C25 C13 C 0 1 N N N -88.125 -98.737  76.742 -5.981 0.703  1.398  C25 LWK 13 
LWK C26 C14 C 0 1 Y N N -88.728 -99.131  75.375 -6.891 0.433  0.226  C26 LWK 14 
LWK C27 C15 C 0 1 Y N N -88.905 -98.181  74.352 -7.579 -0.763 0.146  C27 LWK 15 
LWK C28 C16 C 0 1 Y N N -89.402 -98.540  73.086 -8.413 -1.010 -0.928 C28 LWK 16 
LWK C29 C17 C 0 1 Y N N -89.732 -99.858  72.817 -8.558 -0.061 -1.923 C29 LWK 17 
LWK C30 C18 C 0 1 Y N N -89.569 -100.816 73.826 -7.870 1.135  -1.843 C30 LWK 18 
LWK C10 C19 C 0 1 N N N -83.897 -97.715  77.088 -1.757 0.394  0.811  C10 LWK 19 
LWK C31 C20 C 0 1 Y N N -89.074 -100.464 75.099 -7.040 1.385  -0.765 C31 LWK 20 
LWK C4  C21 C 0 1 Y N N -81.160 -96.250  74.964 1.924  -0.147 0.206  C4  LWK 21 
LWK C5  C22 C 0 1 Y N N -80.020 -96.719  75.644 1.949  -1.474 -0.229 C5  LWK 22 
LWK C6  C23 C 0 1 Y N N -80.148 -97.542  76.738 0.754  -2.189 -0.317 C6  LWK 23 
LWK C7  C24 C 0 1 N N N -80.727 -95.434  73.782 3.354  0.333  0.196  C7  LWK 24 
LWK C9  C25 C 0 1 N N N -78.795 -96.130  75.027 3.350  -1.842 -0.512 C9  LWK 25 
LWK N16 N1  N 0 1 N N N -78.893 -92.476  71.786 6.496  1.253  0.659  N16 LWK 26 
LWK N22 N2  N 0 1 N N N -86.673 -98.299  76.557 -4.627 0.227  1.086  N22 LWK 27 
LWK N8  N3  N 0 1 N N N -79.247 -95.362  73.956 4.164  -0.800 -0.268 N8  LWK 28 
LWK O12 O1  O 0 1 N N N -77.610 -96.199  75.335 3.716  -2.931 -0.910 O12 LWK 29 
LWK O18 O2  O 0 1 N N N -79.367 -92.566  73.988 6.560  -0.684 1.716  O18 LWK 30 
LWK O19 O3  O 0 1 N N N -78.433 -92.350  69.588 6.448  3.181  -0.411 O19 LWK 31 
LWK H1  H1  H 0 1 N N N -81.560 -98.515  78.019 -1.363 -2.129 -0.057 H1  LWK 32 
LWK H2  H2  H 0 1 N N N -83.319 -96.187  74.869 0.718  1.478  0.876  H2  LWK 33 
LWK H3  H3  H 0 1 N N N -77.339 -94.537  73.561 5.985  -1.822 -0.466 H3  LWK 34 
LWK H4  H4  H 0 1 N N N -79.299 -95.417  71.377 7.057  -0.144 -1.907 H4  LWK 35 
LWK H5  H5  H 0 1 N N N -77.722 -96.164  71.801 5.459  -0.560 -2.575 H5  LWK 36 
LWK H6  H6  H 0 1 N N N -77.562 -94.794  69.747 5.878  1.922  -2.527 H6  LWK 37 
LWK H7  H7  H 0 1 N N N -76.547 -94.126  71.069 4.471  1.442  -1.546 H7  LWK 38 
LWK H8  H8  H 0 1 N N N -84.649 -95.716  77.341 -2.842 -0.632 -0.743 H8  LWK 39 
LWK H9  H9  H 0 1 N N N -85.027 -96.463  75.752 -2.243 0.980  -1.206 H9  LWK 40 
LWK H10 H10 H 0 1 N N N -87.056 -96.326  77.276 -3.883 2.034  0.317  H10 LWK 41 
LWK H11 H11 H 0 1 N N N -86.212 -97.404  78.439 -4.706 0.993  -0.868 H11 LWK 42 
LWK H12 H12 H 0 1 N N N -86.050 -100.323 76.419 -4.252 -0.306 3.082  H12 LWK 43 
LWK H13 H13 H 0 1 N N N -85.712 -99.530  77.995 -3.622 1.286  2.595  H13 LWK 44 
LWK H14 H14 H 0 1 N N N -83.630 -99.805  76.652 -1.779 -0.348 2.835  H14 LWK 45 
LWK H15 H15 H 0 1 N N N -84.368 -98.850  75.322 -2.567 -1.419 1.651  H15 LWK 46 
LWK H16 H16 H 0 1 N N N -88.705 -97.907  77.172 -5.953 1.774  1.597  H16 LWK 47 
LWK H17 H17 H 0 1 N N N -88.162 -99.602  77.421 -6.357 0.179  2.277  H17 LWK 48 
LWK H18 H18 H 0 1 N N N -88.652 -97.149  74.544 -7.465 -1.504 0.923  H18 LWK 49 
LWK H19 H19 H 0 1 N N N -89.527 -97.787  72.322 -8.950 -1.945 -0.991 H19 LWK 50 
LWK H20 H20 H 0 1 N N N -90.109 -100.142 71.846 -9.208 -0.255 -2.763 H20 LWK 51 
LWK H21 H21 H 0 1 N N N -89.828 -101.845 73.625 -7.983 1.876  -2.620 H21 LWK 52 
LWK H22 H22 H 0 1 N N N -83.811 -97.888  78.171 -1.572 1.421  1.127  H22 LWK 53 
LWK H23 H23 H 0 1 N N N -88.961 -101.220 75.862 -6.503 2.319  -0.703 H23 LWK 54 
LWK H24 H24 H 0 1 N N N -79.279 -97.929  77.249 0.760  -3.216 -0.652 H24 LWK 55 
LWK H25 H25 H 0 1 N N N -81.178 -94.431  73.806 3.461  1.174  -0.488 H25 LWK 56 
LWK H26 H26 H 0 1 N N N -80.991 -95.933  72.838 3.658  0.624  1.201  H26 LWK 57 
LWK H27 H27 H 0 1 N N N -79.323 -91.575  71.737 6.901  1.687  1.426  H27 LWK 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LWK O19 C15 DOUB N N 1  
LWK C15 C14 SING N N 2  
LWK C15 N16 SING N N 3  
LWK C14 C13 SING N N 4  
LWK C13 C11 SING N N 5  
LWK N16 C17 SING N N 6  
LWK C29 C28 DOUB Y N 7  
LWK C29 C30 SING Y N 8  
LWK C17 C11 SING N N 9  
LWK C17 O18 DOUB N N 10 
LWK C28 C27 SING Y N 11 
LWK C11 N8  SING N N 12 
LWK C7  N8  SING N N 13 
LWK C7  C4  SING N N 14 
LWK C30 C31 DOUB Y N 15 
LWK N8  C9  SING N N 16 
LWK C27 C26 DOUB Y N 17 
LWK C4  C3  DOUB Y N 18 
LWK C4  C5  SING Y N 19 
LWK C9  O12 DOUB N N 20 
LWK C9  C5  SING N N 21 
LWK C31 C26 SING Y N 22 
LWK C26 C25 SING N N 23 
LWK C3  C2  SING Y N 24 
LWK C5  C6  DOUB Y N 25 
LWK C24 C23 SING N N 26 
LWK C24 C10 SING N N 27 
LWK C2  C10 SING N N 28 
LWK C2  C1  DOUB Y N 29 
LWK N22 C25 SING N N 30 
LWK N22 C23 SING N N 31 
LWK N22 C21 SING N N 32 
LWK C6  C1  SING Y N 33 
LWK C20 C10 SING N N 34 
LWK C20 C21 SING N N 35 
LWK C1  H1  SING N N 36 
LWK C3  H2  SING N N 37 
LWK C11 H3  SING N N 38 
LWK C13 H4  SING N N 39 
LWK C13 H5  SING N N 40 
LWK C14 H6  SING N N 41 
LWK C14 H7  SING N N 42 
LWK C20 H8  SING N N 43 
LWK C20 H9  SING N N 44 
LWK C21 H10 SING N N 45 
LWK C21 H11 SING N N 46 
LWK C23 H12 SING N N 47 
LWK C23 H13 SING N N 48 
LWK C24 H14 SING N N 49 
LWK C24 H15 SING N N 50 
LWK C25 H16 SING N N 51 
LWK C25 H17 SING N N 52 
LWK C27 H18 SING N N 53 
LWK C28 H19 SING N N 54 
LWK C29 H20 SING N N 55 
LWK C30 H21 SING N N 56 
LWK C10 H22 SING N N 57 
LWK C31 H23 SING N N 58 
LWK C6  H24 SING N N 59 
LWK C7  H25 SING N N 60 
LWK C7  H26 SING N N 61 
LWK N16 H27 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LWK SMILES           ACDLabs              12.01 "O=C1NC(=O)CCC1N1Cc2cc(ccc2C1=O)C1CCN(Cc2ccccc2)CC1"                                                                                                                          
LWK InChI            InChI                1.03  "InChI=1S/C25H27N3O3/c29-23-9-8-22(24(30)26-23)28-16-20-14-19(6-7-21(20)25(28)31)18-10-12-27(13-11-18)15-17-4-2-1-3-5-17/h1-7,14,18,22H,8-13,15-16H2,(H,26,29,30)/t22-/m0/s1" 
LWK InChIKey         InChI                1.03  OMISHRJQMYQPMG-QFIPXVFZSA-N                                                                                                                                                   
LWK SMILES_CANONICAL CACTVS               3.385 "O=C1CC[C@H](N2Cc3cc(ccc3C2=O)C4CCN(CC4)Cc5ccccc5)C(=O)N1"                                                                                                                    
LWK SMILES           CACTVS               3.385 "O=C1CC[CH](N2Cc3cc(ccc3C2=O)C4CCN(CC4)Cc5ccccc5)C(=O)N1"                                                                                                                     
LWK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCC(CC2)c3ccc4c(c3)CN(C4=O)[C@H]5CCC(=O)NC5=O"                                                                                                                  
LWK SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCC(CC2)c3ccc4c(c3)CN(C4=O)C5CCC(=O)NC5=O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LWK "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-[5-(1-benzylpiperidin-4-yl)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione"             
LWK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[3-oxidanylidene-6-[1-(phenylmethyl)piperidin-4-yl]-1~{H}-isoindol-2-yl]piperidine-2,6-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LWK "Create component" 2022-03-09 RCSB 
LWK "Initial release"  2023-03-08 RCSB 
# 
