data_REK
#

_chem_comp.id                                   REK
_chem_comp.name                                 "D-Aspartate Tenofovir"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H19 N6 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2~{R})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]butanedioic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-28
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       402.300
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    REK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AID
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
REK  C04  C1   C  0  1  N  N  R  -5.356  -44.670  130.716   3.127  -0.006  -0.451  C04  REK   1  
REK  C05  C2   C  0  1  N  N  N  -5.418  -45.897  129.735   3.651   0.971  -1.471  C05  REK   2  
REK  C08  C3   C  0  1  N  N  N  -6.590  -44.777  131.657   4.287  -0.830   0.109  C08  REK   3  
REK  C09  C4   C  0  1  N  N  N  -7.132  -43.460  132.270   3.749  -1.889   1.038  C09  REK   4  
REK  C12  C5   C  0  1  N  N  N  -1.602  -46.104  131.352   0.054   1.764   1.765  C12  REK   5  
REK  C14  C6   C  0  1  N  N  R  -1.967  -48.051  132.773  -1.852   2.662   0.623  C14  REK   6  
REK  C15  C7   C  0  1  N  N  N  -0.612  -48.472  132.144  -1.995   4.057   1.234  C15  REK   7  
REK  C16  C8   C  0  1  N  N  N  -3.102  -49.037  132.258  -3.216   2.184   0.119  C16  REK   8  
REK  C18  C9   C  0  1  Y  N  N  -5.549  -49.671  132.998  -3.042  -0.339   0.013  C18  REK   9  
REK  C20  C10  C  0  1  Y  N  N  -6.751  -51.594  133.111  -3.101  -2.082   1.509  C20  REK  10  
REK  C22  C11  C  0  1  Y  N  N  -7.872  -49.646  133.794  -2.817  -2.626  -0.716  C22  REK  11  
REK  C24  C12  C  0  1  Y  N  N  -6.675  -48.920  133.498  -2.871  -1.259  -1.036  C24  REK  12  
REK  C26  C13  C  0  1  Y  N  N  -5.033  -47.511  133.157  -2.903   0.723  -1.915  C26  REK  13  
REK  N03  N1   N  0  1  N  N  N  -4.057  -44.559  131.431   2.477   0.730   0.642  N03  REK  14  
REK  N17  N2   N  0  1  Y  N  N  -4.497  -48.768  132.781  -3.059   0.902  -0.572  N17  REK  15  
REK  N19  N3   N  0  1  Y  N  N  -5.568  -51.032  132.794  -3.152  -0.791   1.257  N19  REK  16  
REK  N21  N4   N  0  1  Y  N  N  -7.904  -50.997  133.596  -2.941  -2.984   0.558  N21  REK  17  
REK  N23  N5   N  0  1  N  N  N  -9.034  -49.057  134.282  -2.651  -3.579  -1.706  N23  REK  18  
REK  N25  N6   N  0  1  Y  N  N  -6.317  -47.563  133.587  -2.793  -0.545  -2.184  N25  REK  19  
REK  O01  O1   O  0  1  N  N  N  -2.560  -44.622  129.229   0.561   1.560  -0.883  O01  REK  20  
REK  O06  O2   O  0  1  N  N  N  -6.397  -45.970  128.946   3.499   2.158  -1.306  O06  REK  21  
REK  O07  O3   O  0  1  N  N  N  -4.508  -46.765  129.762   4.287   0.522  -2.565  O07  REK  22  
REK  O10  O4   O  0  1  N  N  N  -8.353  -43.174  132.124   2.560  -1.974   1.232  O10  REK  23  
REK  O11  O5   O  0  1  N  N  N  -6.344  -42.706  132.902   4.592  -2.736   1.649  O11  REK  24  
REK  O13  O6   O  0  1  N  N  N  -2.300  -46.708  132.427  -1.367   1.755   1.615  O13  REK  25  
REK  O27  O7   O  0  1  N  N  N  -1.688  -43.422  131.329   0.182  -0.631   0.311  O27  REK  26  
REK  P02  P1   P  0  1  N  N  N  -2.533  -44.503  130.732   0.817   0.846   0.388  P02  REK  27  
REK  H1   H1   H  0  1  N  N  N  -5.488  -43.764  130.107   2.403  -0.670  -0.922  H1   REK  28  
REK  H2   H2   H  0  1  N  N  N  -7.407  -45.234  131.080   4.824  -1.306  -0.711  H2   REK  29  
REK  H3   H3   H  0  1  N  N  N  -6.314  -45.440  132.490   4.966  -0.177   0.658  H3   REK  30  
REK  H4   H4   H  0  1  N  N  N  -1.527  -46.822  130.522   0.413   2.793   1.759  H4   REK  31  
REK  H5   H5   H  0  1  N  N  N  -0.592  -45.826  131.688   0.322   1.292   2.710  H5   REK  32  
REK  H6   H6   H  0  1  N  N  N  -1.893  -48.156  133.866  -1.150   2.700  -0.209  H6   REK  33  
REK  H7   H7   H  0  1  N  N  N   0.181  -47.795  132.494  -1.011   4.434   1.513  H7   REK  34  
REK  H8   H8   H  0  1  N  N  N  -0.373  -49.503  132.444  -2.448   4.729   0.505  H8   REK  35  
REK  H9   H9   H  0  1  N  N  N  -0.684  -48.416  131.048  -2.628   4.003   2.120  H9   REK  36  
REK  H10  H10  H  0  1  N  N  N  -3.135  -48.970  131.161  -3.893   2.061   0.964  H10  REK  37  
REK  H11  H11  H  0  1  N  N  N  -2.822  -50.058  132.555  -3.626   2.921  -0.572  H11  REK  38  
REK  H12  H12  H  0  1  N  N  N  -6.809  -52.663  132.966  -3.197  -2.416   2.532  H12  REK  39  
REK  H13  H13  H  0  1  N  N  N  -4.468  -46.592  133.105  -2.876   1.517  -2.647  H13  REK  40  
REK  H14  H14  H  0  1  N  N  N  -4.127  -43.718  131.968   2.677   0.303   1.535  H14  REK  41  
REK  H15  H15  H  0  1  N  N  N  -9.734  -49.759  134.413  -2.569  -3.305  -2.633  H15  REK  42  
REK  H16  H16  H  0  1  N  N  N  -8.840  -48.613  135.157  -2.615  -4.519  -1.472  H16  REK  43  
REK  H17  H17  H  0  1  N  N  N  -4.692  -47.437  129.117   4.606   1.186  -3.191  H17  REK  44  
REK  H18  H18  H  0  1  N  N  N  -6.818  -41.945  133.218   4.200  -3.398   2.236  H18  REK  45  
REK  H19  H19  H  0  1  N  N  N  -1.262  -42.933  130.635   0.311  -1.158   1.111  H19  REK  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
REK  O06  C05  DOUB  N  N   1  
REK  O01  P02  DOUB  N  N   2  
REK  C05  O07  SING  N  N   3  
REK  C05  C04  SING  N  N   4  
REK  C04  N03  SING  N  N   5  
REK  C04  C08  SING  N  N   6  
REK  P02  O27  SING  N  N   7  
REK  P02  C12  SING  N  N   8  
REK  P02  N03  SING  N  N   9  
REK  C12  O13  SING  N  N  10  
REK  C08  C09  SING  N  N  11  
REK  O10  C09  DOUB  N  N  12  
REK  C15  C14  SING  N  N  13  
REK  C16  C14  SING  N  N  14  
REK  C16  N17  SING  N  N  15  
REK  C09  O11  SING  N  N  16  
REK  O13  C14  SING  N  N  17  
REK  N17  C18  SING  Y  N  18  
REK  N17  C26  SING  Y  N  19  
REK  N19  C18  DOUB  Y  N  20  
REK  N19  C20  SING  Y  N  21  
REK  C18  C24  SING  Y  N  22  
REK  C20  N21  DOUB  Y  N  23  
REK  C26  N25  DOUB  Y  N  24  
REK  C24  N25  SING  Y  N  25  
REK  C24  C22  DOUB  Y  N  26  
REK  N21  C22  SING  Y  N  27  
REK  C22  N23  SING  N  N  28  
REK  C04  H1   SING  N  N  29  
REK  C08  H2   SING  N  N  30  
REK  C08  H3   SING  N  N  31  
REK  C12  H4   SING  N  N  32  
REK  C12  H5   SING  N  N  33  
REK  C14  H6   SING  N  N  34  
REK  C15  H7   SING  N  N  35  
REK  C15  H8   SING  N  N  36  
REK  C15  H9   SING  N  N  37  
REK  C16  H10  SING  N  N  38  
REK  C16  H11  SING  N  N  39  
REK  C20  H12  SING  N  N  40  
REK  C26  H13  SING  N  N  41  
REK  N03  H14  SING  N  N  42  
REK  N23  H15  SING  N  N  43  
REK  N23  H16  SING  N  N  44  
REK  O07  H17  SING  N  N  45  
REK  O11  H18  SING  N  N  46  
REK  O27  H19  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
REK  InChI             InChI                 1.03   "InChI=1S/C13H19N6O7P/c1-7(3-19-5-17-10-11(14)15-4-16-12(10)19)26-6-27(24,25)18-8(13(22)23)2-9(20)21/h4-5,7-8H,2-3,6H2,1H3,(H,20,21)(H,22,23)(H2,14,15,16)(H2,18,24,25)/t7-,8-/m1/s1"  
REK  InChIKey          InChI                 1.03   YBOHKRVDTZQCCV-HTQZYQBOSA-N  
REK  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[C@H](CC(O)=O)C(O)=O"  
REK  SMILES            CACTVS                3.385  "C[CH](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[CH](CC(O)=O)C(O)=O"  
REK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](Cn1cnc2c1ncnc2N)OCP(=O)(N[C@H](CC(=O)O)C(=O)O)O"  
REK  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(Cn1cnc2c1ncnc2N)OCP(=O)(NC(CC(=O)O)C(=O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          REK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]butanedioic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
REK  "Create component"  2020-09-28  PDBE  
REK  "Initial release"   2021-01-13  RCSB  
REK  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     REK
_pdbx_chem_comp_synonyms.name        "(2~{R})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]butanedioic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
