data_T7K
#

_chem_comp.id                                   T7K
_chem_comp.name                                 "neutral Yb(III)-caged complex"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H29 N4 O7 Yb"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "8-[(4-hydroxyphenyl)methyl]-2,17,18-trioxa-5,8,11,14-tetraza-1(gamma)-ytterbatricyclo[9.6.3.25,14]docosane-3,16,19-trione; Yb(III) clathrochelate"
_chem_comp.pdbx_formal_charge                   4
_chem_comp.pdbx_initial_date                    2020-12-17
_chem_comp.pdbx_modified_date                   2021-07-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       622.518
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    T7K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BAY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T7K  C4   C1   C   0  1  N  N  N  5.130  -29.669  57.121  5.130  -29.669  57.121  C4   T7K   1  
T7K  C2   C2   C   0  1  N  N  N  5.994  -31.500  54.722  5.994  -31.500  54.722  C2   T7K   2  
T7K  C3   C3   C   0  1  N  N  N  5.597  -31.145  57.084  5.597  -31.145  57.084  C3   T7K   3  
T7K  C1   C4   C   0  1  N  N  N  5.470  -32.199  53.444  5.470  -32.199  53.444  C1   T7K   4  
T7K  C7   C5   C   0  1  N  N  N  3.624  -29.015  52.869  3.624  -29.015  52.869  C7   T7K   5  
T7K  C6   C6   C   0  1  N  N  N  3.752  -28.056  55.086  3.752  -28.056  55.086  C6   T7K   6  
T7K  C8   C7   C   0  1  N  N  N  4.885  -29.895  53.106  4.885  -29.895  53.106  C8   T7K   7  
T7K  C12  C8   C   0  1  N  N  N  5.036  -33.258  56.061  5.036  -33.258  56.061  C12  T7K   8  
T7K  C16  C9   C   0  1  N  N  N  1.620  -28.122  53.924  1.620  -28.122  53.924  C16  T7K   9  
T7K  C13  C10  C   0  1  N  N  N  1.519  -29.986  58.234  1.519  -29.986  58.234  C13  T7K  10  
T7K  C9   C11  C   0  1  N  N  N  2.820  -33.017  53.218  2.820  -33.017  53.218  C9   T7K  11  
T7K  C5   C12  C   0  1  N  N  N  3.237  -28.271  56.550  3.237  -28.271  56.550  C5   T7K  12  
T7K  C11  C13  C   0  1  N  N  N  4.023  -33.578  57.195  4.023  -33.578  57.195  C11  T7K  13  
T7K  O3   O1   O   0  1  N  N  N  4.417  -34.154  58.257  4.417  -34.154  58.257  O3   T7K  14  
T7K  N1   N1   N   1  1  N  N  N  4.635  -31.270  52.659  4.635  -31.270  52.659  N1   T7K  15  
T7K  O2   O2   O   0  1  N  N  N  1.659  -33.207  53.670  1.659  -33.207  53.670  O2   T7K  16  
T7K  O1   O3   O   0  1  N  N  N  3.613  -33.996  53.116  3.613  -33.996  53.116  O1   T7K  17  
T7K  YB   YB1  YB  0  0  N  N  N  2.952  -31.115  55.215  2.952  -31.115  55.215  YB   T7K  18  
T7K  C01  C14  C   0  1  Y  N  N  1.869  -26.698  53.329  1.869  -26.698  53.329  C01  T7K  19  
T7K  C02  C15  C   0  1  Y  N  N  2.198  -25.511  54.268  2.198  -25.511  54.268  C02  T7K  20  
T7K  C03  C16  C   0  1  Y  N  N  2.405  -24.305  53.766  2.405  -24.305  53.766  C03  T7K  21  
T7K  C04  C17  C   0  1  Y  N  N  2.307  -24.078  52.260  2.307  -24.078  52.260  C04  T7K  22  
T7K  C05  C18  C   0  1  Y  N  N  2.017  -25.091  51.453  2.017  -25.091  51.453  C05  T7K  23  
T7K  C06  C19  C   0  1  Y  N  N  1.778  -26.502  52.039  1.778  -26.502  52.039  C06  T7K  24  
T7K  C10  C20  C   0  1  N  N  N  3.198  -31.575  52.794  3.198  -31.575  52.794  C10  T7K  25  
T7K  C14  C21  C   0  1  N  N  N  3.049  -29.846  58.351  3.049  -29.846  58.351  C14  T7K  26  
T7K  N2   N2   N   1  1  N  N  N  5.091  -31.803  55.850  5.091  -31.803  55.850  N2   T7K  27  
T7K  N3   N3   N   1  1  N  N  N  3.636  -29.604  57.021  3.636  -29.604  57.021  N3   T7K  28  
T7K  N4   N4   N   1  1  N  N  N  2.912  -28.825  54.147  2.912  -28.825  54.147  N4   T7K  29  
T7K  O01  O4   O   0  1  N  N  N  2.527  -22.783  51.726  2.527  -22.783  51.726  O01  T7K  30  
T7K  O4   O5   O   0  1  N  N  N  2.808  -33.268  57.059  2.808  -33.268  57.059  O4   T7K  31  
T7K  O6   O6   O   0  1  N  N  N  0.992  -30.304  57.132  0.992  -30.304  57.132  O6   T7K  32  
T7K  O5   O7   O   0  1  N  N  N  0.791  -29.782  59.242  0.791  -29.782  59.242  O5   T7K  33  
T7K  H1   H1   H   0  1  N  N  N  5.453  -29.208  58.066  5.453  -29.208  58.066  H1   T7K  34  
T7K  H2   H2   H   0  1  N  N  N  5.576  -29.124  56.276  5.576  -29.124  56.276  H2   T7K  35  
T7K  H3   H3   H   0  1  N  N  N  7.005  -31.866  54.953  7.005  -31.866  54.952  H3   T7K  36  
T7K  H4   H4   H   0  1  N  N  N  6.026  -30.413  54.559  6.026  -30.413  54.559  H4   T7K  37  
T7K  H5   H5   H   0  1  N  N  N  6.696  -31.180  57.092  6.696  -31.180  57.092  H5   T7K  38  
T7K  H6   H6   H   0  1  N  N  N  5.207  -31.674  57.966  5.207  -31.674  57.966  H6   T7K  39  
T7K  H7   H7   H   0  1  N  N  N  6.324  -32.525  52.832  6.324  -32.525  52.832  H7   T7K  40  
T7K  H8   H8   H   0  1  N  N  N  4.869  -33.075  53.730  4.869  -33.075  53.730  H8   T7K  41  
T7K  H9   H9   H   0  1  N  N  N  3.929  -28.036  52.470  3.929  -28.036  52.470  H9   T7K  42  
T7K  H10  H10  H   0  1  N  N  N  2.959  -29.514  52.149  2.959  -29.514  52.149  H10  T7K  43  
T7K  H11  H11  H   0  1  N  N  N  3.699  -26.987  54.833  3.699  -26.987  54.833  H11  T7K  44  
T7K  H12  H12  H   0  1  N  N  N  4.794  -28.400  55.010  4.794  -28.400  55.011  H12  T7K  45  
T7K  H13  H13  H   0  1  N  N  N  5.731  -29.477  52.541  5.731  -29.477  52.541  H13  T7K  46  
T7K  H14  H14  H   0  1  N  N  N  5.128  -29.900  54.179  5.128  -29.900  54.179  H14  T7K  47  
T7K  H15  H15  H   0  1  N  N  N  6.033  -33.625  56.345  6.033  -33.625  56.345  H15  T7K  48  
T7K  H16  H16  H   0  1  N  N  N  4.715  -33.752  55.132  4.715  -33.751  55.132  H16  T7K  49  
T7K  H17  H17  H   0  1  N  N  N  1.089  -28.026  54.883  1.089  -28.026  54.883  H17  T7K  50  
T7K  H18  H18  H   0  1  N  N  N  1.006  -28.706  53.222  1.006  -28.706  53.222  H18  T7K  51  
T7K  H19  H19  H   0  1  N  N  N  3.673  -27.505  57.208  3.673  -27.504  57.208  H19  T7K  52  
T7K  H20  H20  H   0  1  N  N  N  2.140  -28.189  56.568  2.140  -28.189  56.568  H20  T7K  53  
T7K  H21  H21  H   0  1  N  N  N  2.258  -25.668  55.335  2.259  -25.668  55.335  H21  T7K  54  
T7K  H22  H22  H   0  1  N  N  N  2.643  -23.481  54.422  2.643  -23.481  54.422  H22  T7K  55  
T7K  H23  H23  H   0  1  N  N  N  1.948  -24.930  50.387  1.948  -24.930  50.387  H23  T7K  56  
T7K  H24  H24  H   0  1  N  N  N  1.536  -27.325  51.383  1.536  -27.325  51.383  H24  T7K  57  
T7K  H25  H25  H   0  1  N  N  N  2.725  -31.381  51.820  2.725  -31.381  51.820  H25  T7K  58  
T7K  H26  H26  H   0  1  N  N  N  2.783  -30.889  53.546  2.783  -30.889  53.547  H26  T7K  59  
T7K  H27  H27  H   0  1  N  N  N  3.288  -29.001  59.014  3.288  -29.001  59.014  H27  T7K  60  
T7K  H28  H28  H   0  1  N  N  N  3.468  -30.772  58.771  3.468  -30.772  58.771  H28  T7K  61  
T7K  H29  H29  H   0  1  N  N  N  2.430  -22.809  50.781  2.430  -22.809  50.781  H29  T7K  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T7K  C4   C3   SING  N  N   1  
T7K  C4   N3   SING  N  N   2  
T7K  C2   C1   SING  N  N   3  
T7K  C2   N2   SING  N  N   4  
T7K  C3   N2   SING  N  N   5  
T7K  C1   N1   SING  N  N   6  
T7K  C7   C8   SING  N  N   7  
T7K  C7   N4   SING  N  N   8  
T7K  C6   C5   SING  N  N   9  
T7K  C6   N4   SING  N  N  10  
T7K  C8   N1   SING  N  N  11  
T7K  C12  C11  SING  N  N  12  
T7K  C12  N2   SING  N  N  13  
T7K  C16  C01  SING  N  N  14  
T7K  C16  N4   SING  N  N  15  
T7K  C13  C14  SING  N  N  16  
T7K  C13  O6   SING  N  N  17  
T7K  C13  O5   DOUB  N  N  18  
T7K  C9   O2   SING  N  N  19  
T7K  C9   O1   DOUB  N  N  20  
T7K  C9   C10  SING  N  N  21  
T7K  C5   N3   SING  N  N  22  
T7K  C11  O3   DOUB  N  N  23  
T7K  C11  O4   SING  N  N  24  
T7K  N1   C10  SING  N  N  25  
T7K  YB   N2   SING  N  N  26  
T7K  C01  C02  DOUB  Y  N  27  
T7K  C01  C06  SING  Y  N  28  
T7K  C02  C03  SING  Y  N  29  
T7K  C03  C04  DOUB  Y  N  30  
T7K  C04  C05  SING  Y  N  31  
T7K  C04  O01  SING  N  N  32  
T7K  C05  C06  DOUB  Y  N  33  
T7K  C14  N3   SING  N  N  34  
T7K  N1   YB   SING  N  N  35  
T7K  YB   N3   SING  N  N  36  
T7K  N4   YB   SING  N  N  37  
T7K  YB   O2   SING  N  N  38  
T7K  YB   O4   SING  N  N  39  
T7K  YB   O6   SING  N  N  40  
T7K  C4   H1   SING  N  N  41  
T7K  C4   H2   SING  N  N  42  
T7K  C2   H3   SING  N  N  43  
T7K  C2   H4   SING  N  N  44  
T7K  C3   H5   SING  N  N  45  
T7K  C3   H6   SING  N  N  46  
T7K  C1   H7   SING  N  N  47  
T7K  C1   H8   SING  N  N  48  
T7K  C7   H9   SING  N  N  49  
T7K  C7   H10  SING  N  N  50  
T7K  C6   H11  SING  N  N  51  
T7K  C6   H12  SING  N  N  52  
T7K  C8   H13  SING  N  N  53  
T7K  C8   H14  SING  N  N  54  
T7K  C12  H15  SING  N  N  55  
T7K  C12  H16  SING  N  N  56  
T7K  C16  H17  SING  N  N  57  
T7K  C16  H18  SING  N  N  58  
T7K  C5   H19  SING  N  N  59  
T7K  C5   H20  SING  N  N  60  
T7K  C02  H21  SING  N  N  61  
T7K  C03  H22  SING  N  N  62  
T7K  C05  H23  SING  N  N  63  
T7K  C06  H24  SING  N  N  64  
T7K  C10  H25  SING  N  N  65  
T7K  C10  H26  SING  N  N  66  
T7K  C14  H27  SING  N  N  67  
T7K  C14  H28  SING  N  N  68  
T7K  O01  H29  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T7K  InChI             InChI                 1.03   "InChI=1S/C21H32N4O7.Yb/c26-18-3-1-17(2-4-18)13-22-5-7-23(14-19(27)28)9-11-25(16-21(31)32)12-10-24(8-6-22)15-20(29)30;/h1-4,26H,5-16H2,(H,27,28)(H,29,30)(H,31,32);/q;+7/p-3"  
T7K  InChIKey          InChI                 1.03   CKUMJXQWUQKKED-UHFFFAOYSA-K  
T7K  SMILES_CANONICAL  CACTVS                3.385  "Oc1ccc(CN2CCN3CCN4CCN(CC2)CC(=O)O[Yb](OC(=O)C4)OC(=O)C3)cc1"  
T7K  SMILES            CACTVS                3.385  "Oc1ccc(CN2CCN3CCN4CCN(CC2)CC(=O)O[Yb](OC(=O)C4)OC(=O)C3)cc1"  
T7K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C[N+]23CC[N+]45[Yb]2678([N+](CC4)(CC[N+]6(CC3)CC(=O)O7)CC(=O)O8)OC(=O)C5)O"  
T7K  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C[N+]23CC[N+]45[Yb]2678([N+](CC4)(CC[N+]6(CC3)CC(=O)O7)CC(=O)O8)OC(=O)C5)O"  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  T7K  "8-[(4-hydroxyphenyl)methyl]-2,17,18-trioxa-5,8,11,14-tetraza-1(gamma)-ytterbatricyclo[9.6.3.25,14]docosane-3,16,19-trione"  PDB     ?  
2  T7K  "Yb(III) clathrochelate"                                                                                                     AUTHOR  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T7K  "Create component"  2020-12-17  PDBE  
T7K  "Initial release"   2021-07-21  RCSB  
##
