data_05L
#

_chem_comp.id                                   05L
_chem_comp.name                                 "heptyl 1-seleno-beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H26 O5 Se"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "heptyl 1-seleno-beta-D-glucoside; heptyl 1-seleno-D-glucoside; heptyl 1-seleno-glucoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-11-29
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       341.303
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    05L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3USP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  05L  "heptyl 1-seleno-beta-D-glucoside"  PDB  ?  
2  05L  "heptyl 1-seleno-D-glucoside"       PDB  ?  
3  05L  "heptyl 1-seleno-glucoside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
05L  SE      SE      SE  0  1  N  N  N   0.086  41.003  13.775   0.012  -1.350   0.338  SE      05L   1  
05L  C1      C1      C   0  1  N  N  S  -0.348  42.559  12.656  -1.584  -0.434  -0.339  C1      05L   2  
05L  C2      C2      C   0  1  N  N  R  -1.868  42.610  12.714  -2.831  -1.242   0.029  C2      05L   3  
05L  O2      O2      O   0  1  N  N  N  -2.365  41.640  11.806  -2.773  -2.523  -0.602  O2      05L   4  
05L  C3      C3      C   0  1  N  N  S  -2.322  43.990  12.217  -4.076  -0.491  -0.451  C3      05L   5  
05L  O3      O3      O   0  1  N  N  N  -3.719  44.125  12.370  -5.248  -1.202  -0.047  O3      05L   6  
05L  C4      C4      C   0  1  N  N  S  -1.618  45.032  13.102  -4.086   0.909   0.173  C4      05L   7  
05L  O4      O4      O   0  1  N  N  N  -2.098  46.328  12.809  -5.206   1.645  -0.323  O4      05L   8  
05L  C5      C5      C   0  1  N  N  R  -0.114  44.937  12.800  -2.790   1.634  -0.200  C5      05L   9  
05L  O5      O5      O   0  1  N  N  N   0.351  43.644  13.220  -1.671   0.867   0.247  O5      05L  10  
05L  C6      C6      C   0  1  N  N  N   0.686  45.973  13.585  -2.765   3.010   0.468  C6      05L  11  
05L  O6      O6      O   0  1  N  N  N   0.487  45.723  14.964  -1.614   3.733   0.027  O6      05L  12  
05L  "C1'"   "C1'"   C   0  1  N  N  N   1.535  40.215  12.722   1.425  -0.129  -0.258  "C1'"   05L  13  
05L  "C2'"   "C2'"   C   0  1  N  N  N   2.605  39.963  13.733   2.786  -0.673   0.180  "C2'"   05L  14  
05L  "C3'"   "C3'"   C   0  1  N  N  N   2.729  38.475  13.935   3.889   0.280  -0.285  "C3'"   05L  15  
05L  "C4'"   "C4'"   C   0  1  N  N  N   3.612  38.195  15.124   5.251  -0.263   0.152  "C4'"   05L  16  
05L  "C5'"   "C5'"   C   0  1  N  N  N   3.081  36.967  15.816   6.354   0.690  -0.313  "C5'"   05L  17  
05L  "C6'"   "C6'"   C   0  1  N  N  N   3.340  37.087  17.304   7.715   0.146   0.125  "C6'"   05L  18  
05L  "C7'"   "C7'"   C   0  1  N  N  N   3.580  35.702  17.835   8.818   1.099  -0.340  "C7'"   05L  19  
05L  H1      H1      H   0  1  N  N  N  -0.001  42.311  11.642  -1.517  -0.341  -1.423  H1      05L  20  
05L  H2      H2      H   0  1  N  N  N  -2.222  42.437  13.741  -2.876  -1.370   1.110  H2      05L  21  
05L  HO2     HO2     H   0  1  N  Y  N  -3.315  41.649  11.821  -2.004  -3.053  -0.347  HO2     05L  22  
05L  H3      H3      H   0  1  N  N  N  -2.016  44.126  11.169  -4.056  -0.407  -1.537  H3      05L  23  
05L  HO3     HO3     H   0  1  N  Y  N  -3.991  44.981  12.060  -5.305  -2.100  -0.400  HO3     05L  24  
05L  H4      H4      H   0  1  N  N  N  -1.789  44.781  14.159  -4.157   0.824   1.257  H4      05L  25  
05L  HO4     HO4     H   0  1  N  Y  N  -1.656  46.962  13.361  -6.062   1.239  -0.126  HO4     05L  26  
05L  H5      H5      H   0  1  N  N  N   0.053  45.082  11.722  -2.740   1.754  -1.283  H5      05L  27  
05L  H61     H6      H   0  1  N  N  N   1.755  45.884  13.340  -3.666   3.562   0.197  H61     05L  28  
05L  H62     H6A     H   0  1  N  N  N   0.335  46.985  13.334  -2.726   2.888   1.550  H62     05L  29  
05L  HO6     HO6     H   0  1  N  Y  N   0.976  46.357  15.475  -1.533   4.616   0.412  HO6     05L  30  
05L  "H1'"   "H1'"   H   0  1  N  N  N   1.212  39.276  12.250   1.399  -0.046  -1.344  "H1'"   05L  31  
05L  "H1'A"  "H1'A"  H   0  0  N  N  N   1.883  40.914  11.947   1.266   0.854   0.186  "H1'A"  05L  32  
05L  "H2'"   "H2'"   H   0  1  N  N  N   3.561  40.370  13.371   2.812  -0.756   1.266  "H2'"   05L  33  
05L  "H2'A"  "H2'A"  H   0  0  N  N  N   2.338  40.446  14.685   2.945  -1.656  -0.264  "H2'A"  05L  34  
05L  "H3'"   "H3'"   H   0  1  N  N  N   1.732  38.046  14.111   3.863   0.363  -1.372  "H3'"   05L  35  
05L  "H3'A"  "H3'A"  H   0  0  N  N  N   3.171  38.020  13.036   3.731   1.263   0.158  "H3'A"  05L  36  
05L  "H4'"   "H4'"   H   0  1  N  N  N   4.645  38.018  14.789   5.277  -0.346   1.239  "H4'"   05L  37  
05L  "H4'A"  "H4'A"  H   0  0  N  N  N   3.592  39.051  15.814   5.409  -1.246  -0.291  "H4'A"  05L  38  
05L  "H5'"   "H5'"   H   0  1  N  N  N   1.999  36.881  15.636   6.328   0.773  -1.399  "H5'"   05L  39  
05L  "H5'A"  "H5'A"  H   0  0  N  N  N   3.590  36.074  15.424   6.195   1.673   0.131  "H5'A"  05L  40  
05L  "H6'"   "H6'"   H   0  1  N  N  N   4.225  37.716  17.481   7.741   0.063   1.211  "H6'"   05L  41  
05L  "H6'A"  "H6'A"  H   0  0  N  N  N   2.467  37.534  17.802   7.874  -0.837  -0.319  "H6'A"  05L  42  
05L  "H7'"   "H7'"   H   0  1  N  N  N   3.772  35.752  18.917   9.788   0.712  -0.029  "H7'"   05L  43  
05L  "H7'A"  "H7'A"  H   0  0  N  N  N   2.693  35.079  17.649   8.792   1.182  -1.427  "H7'A"  05L  44  
05L  "H7'B"  "H7'B"  H   0  0  N  N  N   4.451  35.261  17.328   8.660   2.082   0.103  "H7'B"  05L  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
05L  C1     SE      SING  N  N   1  
05L  "C1'"  SE      SING  N  N   2  
05L  C1     C2      SING  N  N   3  
05L  C1     O5      SING  N  N   4  
05L  C1     H1      SING  N  N   5  
05L  O2     C2      SING  N  N   6  
05L  C3     C2      SING  N  N   7  
05L  C2     H2      SING  N  N   8  
05L  O2     HO2     SING  N  N   9  
05L  C3     O3      SING  N  N  10  
05L  C3     C4      SING  N  N  11  
05L  C3     H3      SING  N  N  12  
05L  O3     HO3     SING  N  N  13  
05L  C5     C4      SING  N  N  14  
05L  O4     C4      SING  N  N  15  
05L  C4     H4      SING  N  N  16  
05L  O4     HO4     SING  N  N  17  
05L  C5     O5      SING  N  N  18  
05L  C5     C6      SING  N  N  19  
05L  C5     H5      SING  N  N  20  
05L  C6     O6      SING  N  N  21  
05L  C6     H61     SING  N  N  22  
05L  C6     H62     SING  N  N  23  
05L  O6     HO6     SING  N  N  24  
05L  "C1'"  "C2'"   SING  N  N  25  
05L  "C1'"  "H1'"   SING  N  N  26  
05L  "C1'"  "H1'A"  SING  N  N  27  
05L  "C2'"  "C3'"   SING  N  N  28  
05L  "C2'"  "H2'"   SING  N  N  29  
05L  "C2'"  "H2'A"  SING  N  N  30  
05L  "C3'"  "C4'"   SING  N  N  31  
05L  "C3'"  "H3'"   SING  N  N  32  
05L  "C3'"  "H3'A"  SING  N  N  33  
05L  "C4'"  "C5'"   SING  N  N  34  
05L  "C4'"  "H4'"   SING  N  N  35  
05L  "C4'"  "H4'A"  SING  N  N  36  
05L  "C5'"  "C6'"   SING  N  N  37  
05L  "C5'"  "H5'"   SING  N  N  38  
05L  "C5'"  "H5'A"  SING  N  N  39  
05L  "C6'"  "C7'"   SING  N  N  40  
05L  "C6'"  "H6'"   SING  N  N  41  
05L  "C6'"  "H6'A"  SING  N  N  42  
05L  "C7'"  "H7'"   SING  N  N  43  
05L  "C7'"  "H7'A"  SING  N  N  44  
05L  "C7'"  "H7'B"  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
05L  SMILES            ACDLabs               12.01  "[Se](CCCCCCC)C1OC(C(O)C(O)C1O)CO"  
05L  InChI             InChI                 1.03   "InChI=1S/C13H26O5Se/c1-2-3-4-5-6-7-19-13-12(17)11(16)10(15)9(8-14)18-13/h9-17H,2-8H2,1H3/t9-,10-,11+,12-,13+/m1/s1"  
05L  InChIKey          InChI                 1.03   SHGOSUGSVFEXFV-LBELIVKGSA-N  
05L  SMILES_CANONICAL  CACTVS                3.370  "CCCCCCC[Se][C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O"  
05L  SMILES            CACTVS                3.370  "CCCCCCC[Se][CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
05L  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCCCC[Se][C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
05L  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCCCC[Se]C1C(C(C(C(O1)CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
05L  "SYSTEMATIC NAME"  ACDLabs               12.01  "heptyl 1-seleno-beta-D-glucopyranoside"  
05L  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S,3R,4S,5S,6R)-2-heptylselanyl-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
05L  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
05L  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
05L  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
05L  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
05L  "Create component"          2011-11-29  RCSB  
05L  "Other modification"        2020-07-03  RCSB  
05L  "Modify synonyms"           2020-07-17  RCSB  
05L  "Modify internal type"      2020-07-17  RCSB  
05L  "Modify linking type"       2020-07-17  RCSB  
05L  "Modify atom id"            2020-07-17  RCSB  
05L  "Modify component atom id"  2020-07-17  RCSB  
05L  "Modify leaving atom flag"  2020-07-17  RCSB  
##
