data_13L
# 
_chem_comp.id                                    13L 
_chem_comp.name                                  "3-{4-amino-1-[(3R)-1-propanoylpiperidin-3-yl]-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-N-[4-(propan-2-yl)phenyl]benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H33 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        511.618 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     13L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HCU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
13L C4  C4  C 0 1 Y N N N N N 2.582  12.700 14.514 -8.289  -0.792 0.761  C4  13L 1  
13L C7  C7  C 0 1 Y N N N N N 1.125  12.694 16.837 -6.171  -0.258 -0.942 C7  13L 2  
13L C6  C6  C 0 1 Y N N N N N 2.368  11.508 15.183 -7.031  -1.277 1.059  C6  13L 3  
13L C9  C9  C 0 1 Y N N N N N 2.979  3.617  24.399 2.399   3.843  0.688  C9  13L 4  
13L C13 C13 C 0 1 Y N N N N N 2.065  13.889 14.986 -8.490  -0.043 -0.384 C13 13L 5  
13L C20 C20 C 0 1 N N N N N N 8.233  7.492  22.578 6.057   -0.293 -2.829 C20 13L 6  
13L C21 C21 C 0 1 N N N N N N 6.699  7.480  22.579 4.645   -0.189 -2.249 C21 13L 7  
13L C8  C8  C 0 1 Y N N N N N 2.151  8.121  19.859 -1.132  -0.476 0.315  C8  13L 8  
13L C18 C18 C 0 1 N N N N N N 1.618  10.010 18.351 -3.600  -0.770 0.205  C18 13L 9  
13L C16 C16 C 0 1 Y N N N N N 3.829  5.135  23.017 2.792   1.641  0.148  C16 13L 10 
13L C19 C19 C 0 1 N N N N N N 8.907  4.139  22.399 7.972   -0.650 0.115  C19 13L 11 
13L C26 C26 C 0 1 N N N N N N 2.536  16.392 14.979 -9.821  2.012  -0.777 C26 13L 12 
13L C1  C1  C 0 1 Y N N N N N 0.359  6.476  18.538 -0.872  -2.863 1.721  C1  13L 13 
13L C2  C2  C 0 1 Y N N N N N 1.105  5.995  19.601 0.250   -2.115 1.419  C2  13L 14 
13L C3  C3  C 0 1 Y N N N N N 0.524  7.781  18.109 -2.123  -2.426 1.337  C3  13L 15 
13L C5  C5  C 0 1 Y N N N N N 1.333  13.882 16.158 -7.432  0.223  -1.234 C5  13L 16 
13L C10 C10 C 0 1 Y N N N N N 2.608  5.344  22.397 1.493   1.323  0.588  C10 13L 17 
13L C11 C11 C 0 1 Y N N N N N 1.999  6.814  20.293 0.126   -0.918 0.715  C11 13L 18 
13L C12 C12 C 0 1 Y N N N N N 1.413  8.610  18.789 -2.261  -1.231 0.626  C12 13L 19 
13L C14 C14 C 0 1 Y N N N N N 1.638  11.508 16.354 -5.966  -1.012 0.207  C14 13L 20 
13L C15 C15 C 0 1 Y N N N N N 2.858  6.297  21.363 1.332   -0.118 0.392  C15 13L 21 
13L C17 C17 C 0 1 Y N N N N N 1.530  4.597  22.888 0.681   2.355  1.086  C17 13L 22 
13L C22 C22 C 0 1 N N N N N N 8.770  6.514  21.536 6.880   -1.272 -1.986 C22 13L 23 
13L C23 C23 C 0 1 N N N N N N 6.793  5.105  21.663 5.525   -0.622 0.048  C23 13L 24 
13L C24 C24 C 0 1 N N R N N N 6.144  6.060  22.667 4.717   0.349  -0.818 C24 13L 25 
13L C25 C25 C 0 1 N N N N N N 10.952 3.656  21.066 10.427  -0.593 0.459  C25 13L 26 
13L C27 C27 C 0 1 N N N N N N 1.315  15.330 13.066 -10.322 -0.075 -2.055 C27 13L 27 
13L C28 C28 C 0 1 N N N N N N 10.408 4.228  22.356 9.307   -0.878 -0.544 C28 13L 28 
13L C29 C29 C 0 1 N N N N N N 2.348  15.130 14.172 -9.864  0.484  -0.707 C29 13L 29 
13L N30 N30 N 0 1 Y N N N N N 4.076  4.311  24.041 3.197   2.909  0.218  N30 13L 30 
13L N31 N31 N 0 1 Y N N N N N 1.736  3.734  23.898 1.176   3.588  1.116  N31 13L 31 
13L N32 N32 N 0 1 Y N N N N N 4.144  6.691  21.396 2.451   -0.571 -0.122 N32 13L 32 
13L N33 N33 N 0 1 Y N N N N N 4.704  5.998  22.416 3.363   0.478  -0.275 N33 13L 33 
13L N34 N34 N 0 1 N N N N N N 8.233  5.182  21.784 6.834   -0.841 -0.582 N34 13L 34 
13L N35 N35 N 0 1 N N N N N N 0.248  4.710  22.349 -0.601  2.095  1.530  N35 13L 35 
13L N36 N36 N 0 1 N N N N N N 1.417  10.264 17.019 -4.691  -1.502 0.506  N36 13L 36 
13L O37 O37 O 0 1 N N N N N N 1.965  10.878 19.140 -3.718  0.271  -0.414 O37 13L 37 
13L O38 O38 O 0 1 N N N N N N 8.378  3.179  22.965 7.921   -0.294 1.274  O38 13L 38 
13L H1  H1  H 0 1 N N N N N N 3.165  12.700 13.605 -9.119  -1.002 1.420  H1  13L 39 
13L H2  H2  H 0 1 N N N N N N 0.555  12.696 17.754 -5.345  -0.050 -1.606 H2  13L 40 
13L H3  H3  H 0 1 N N N N N N 2.769  10.585 14.792 -6.875  -1.862 1.953  H3  13L 41 
13L H4  H4  H 0 1 N N N N N N 3.112  2.881  25.178 2.761   4.860  0.730  H4  13L 42 
13L H5  H5  H 0 1 N N N N N N 8.599  7.199  23.573 6.003   -0.654 -3.856 H5  13L 43 
13L H6  H6  H 0 1 N N N N N N 8.588  8.506  22.341 6.531   0.689  -2.813 H6  13L 44 
13L H7  H7  H 0 1 N N N N N N 6.339  8.057  23.443 4.050   0.488  -2.862 H7  13L 45 
13L H8  H8  H 0 1 N N N N N N 6.338  7.946  21.650 4.181   -1.175 -2.243 H8  13L 46 
13L H9  H9  H 0 1 N N N N N N 2.854  8.769  20.360 -1.232  0.451  -0.230 H9  13L 47 
13L H10 H10 H 0 1 N N N N N N 3.284  16.217 15.766 -10.815 2.393  -1.010 H10 13L 48 
13L H11 H11 H 0 1 N N N N N N 2.881  17.201 14.319 -9.495  2.411  0.184  H11 13L 49 
13L H12 H12 H 0 1 N N N N N N 1.579  16.678 15.440 -9.122  2.320  -1.554 H12 13L 50 
13L H13 H13 H 0 1 N N N N N N -0.353 5.832  18.043 -0.770  -3.790 2.266  H13 13L 51 
13L H14 H14 H 0 1 N N N N N N 0.993  4.964  19.901 1.227   -2.463 1.723  H14 13L 52 
13L H15 H15 H 0 1 N N N N N N -0.029 8.152  17.259 -2.997  -3.015 1.575  H15 13L 53 
13L H16 H16 H 0 1 N N N N N N 0.923  14.804 16.544 -7.592  0.809  -2.128 H16 13L 54 
13L H17 H17 H 0 1 N N N N N N 9.868  6.482  21.597 6.460   -2.273 -2.074 H17 13L 55 
13L H18 H18 H 0 1 N N N N N N 8.468  6.848  20.532 7.913   -1.275 -2.333 H18 13L 56 
13L H19 H19 H 0 1 N N N N N N 6.495  5.388  20.643 5.664   -0.197 1.042  H19 13L 57 
13L H20 H20 H 0 1 N N N N N N 6.462  4.076  21.869 4.994   -1.571 0.125  H20 13L 58 
13L H21 H21 H 0 1 N N N N N N 6.345  5.678  23.679 5.203   1.325  -0.821 H21 13L 59 
13L H22 H22 H 0 1 N N N N N N 12.049 3.735  21.063 10.360  0.442  0.794  H22 13L 60 
13L H23 H23 H 0 1 N N N N N N 10.660 2.599  20.982 10.326  -1.260 1.315  H23 13L 61 
13L H24 H24 H 0 1 N N N N N N 10.542 4.218  20.214 11.393  -0.758 -0.019 H24 13L 62 
13L H25 H25 H 0 1 N N N N N N 1.201  14.396 12.497 -10.353 -1.164 -2.005 H25 13L 63 
13L H26 H26 H 0 1 N N N N N N 0.349  15.608 13.513 -11.316 0.306  -2.288 H26 13L 64 
13L H27 H27 H 0 1 N N N N N N 1.651  16.131 12.391 -9.623  0.233  -2.832 H27 13L 65 
13L H28 H28 H 0 1 N N N N N N 10.825 3.664  23.203 9.375   -1.913 -0.879 H28 13L 66 
13L H29 H29 H 0 1 N N N N N N 10.707 5.283  22.435 9.408   -0.212 -1.401 H29 13L 67 
13L H30 H30 H 0 1 N N N N N N 3.305  14.948 13.662 -10.563 0.176  0.071  H30 13L 68 
13L H31 H31 H 0 1 N N N N N N -0.372 4.088  22.828 -0.961  1.196  1.475  H31 13L 69 
13L H32 H32 H 0 1 N N N N N N -0.076 5.650  22.455 -1.142  2.812  1.897  H32 13L 70 
13L H33 H33 H 0 1 N N N N N N 1.084  9.505  16.459 -4.592  -2.368 0.930  H33 13L 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
13L C27 C29 SING N N 1  
13L C29 C26 SING N N 2  
13L C29 C13 SING N N 3  
13L C4  C13 DOUB Y N 4  
13L C4  C6  SING Y N 5  
13L C13 C5  SING Y N 6  
13L C6  C14 DOUB Y N 7  
13L C5  C7  DOUB Y N 8  
13L C14 C7  SING Y N 9  
13L C14 N36 SING N N 10 
13L N36 C18 SING N N 11 
13L C3  C1  DOUB Y N 12 
13L C3  C12 SING Y N 13 
13L C18 C12 SING N N 14 
13L C18 O37 DOUB N N 15 
13L C1  C2  SING Y N 16 
13L C12 C8  DOUB Y N 17 
13L C2  C11 DOUB Y N 18 
13L C8  C11 SING Y N 19 
13L C11 C15 SING N N 20 
13L C25 C28 SING N N 21 
13L C15 N32 DOUB Y N 22 
13L C15 C10 SING Y N 23 
13L N32 N33 SING Y N 24 
13L C22 N34 SING N N 25 
13L C22 C20 SING N N 26 
13L C23 N34 SING N N 27 
13L C23 C24 SING N N 28 
13L N34 C19 SING N N 29 
13L N35 C17 SING N N 30 
13L C28 C19 SING N N 31 
13L C10 C17 DOUB Y N 32 
13L C10 C16 SING Y N 33 
13L C19 O38 DOUB N N 34 
13L N33 C24 SING N N 35 
13L N33 C16 SING Y N 36 
13L C20 C21 SING N N 37 
13L C21 C24 SING N N 38 
13L C17 N31 SING Y N 39 
13L C16 N30 DOUB Y N 40 
13L N31 C9  DOUB Y N 41 
13L N30 C9  SING Y N 42 
13L C4  H1  SING N N 43 
13L C7  H2  SING N N 44 
13L C6  H3  SING N N 45 
13L C9  H4  SING N N 46 
13L C20 H5  SING N N 47 
13L C20 H6  SING N N 48 
13L C21 H7  SING N N 49 
13L C21 H8  SING N N 50 
13L C8  H9  SING N N 51 
13L C26 H10 SING N N 52 
13L C26 H11 SING N N 53 
13L C26 H12 SING N N 54 
13L C1  H13 SING N N 55 
13L C2  H14 SING N N 56 
13L C3  H15 SING N N 57 
13L C5  H16 SING N N 58 
13L C22 H17 SING N N 59 
13L C22 H18 SING N N 60 
13L C23 H19 SING N N 61 
13L C23 H20 SING N N 62 
13L C24 H21 SING N N 63 
13L C25 H22 SING N N 64 
13L C25 H23 SING N N 65 
13L C25 H24 SING N N 66 
13L C27 H25 SING N N 67 
13L C27 H26 SING N N 68 
13L C27 H27 SING N N 69 
13L C28 H28 SING N N 70 
13L C28 H29 SING N N 71 
13L C29 H30 SING N N 72 
13L N35 H31 SING N N 73 
13L N35 H32 SING N N 74 
13L N36 H33 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
13L SMILES           ACDLabs              12.01 "O=C(Nc1ccc(cc1)C(C)C)c5cccc(c3nn(c2ncnc(c23)N)C4CCCN(C(=O)CC)C4)c5"                                                                                                                                                           
13L InChI            InChI                1.03  "InChI=1S/C29H33N7O2/c1-4-24(37)35-14-6-9-23(16-35)36-28-25(27(30)31-17-32-28)26(34-36)20-7-5-8-21(15-20)29(38)33-22-12-10-19(11-13-22)18(2)3/h5,7-8,10-13,15,17-18,23H,4,6,9,14,16H2,1-3H3,(H,33,38)(H2,30,31,32)/t23-/m1/s1" 
13L InChIKey         InChI                1.03  OQUNLLPGZMGVNR-HSZRJFAPSA-N                                                                                                                                                                                                    
13L SMILES_CANONICAL CACTVS               3.370 "CCC(=O)N1CCC[C@H](C1)n2nc(c3cccc(c3)C(=O)Nc4ccc(cc4)C(C)C)c5c(N)ncnc25"                                                                                                                                                       
13L SMILES           CACTVS               3.370 "CCC(=O)N1CCC[CH](C1)n2nc(c3cccc(c3)C(=O)Nc4ccc(cc4)C(C)C)c5c(N)ncnc25"                                                                                                                                                        
13L SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4cccc(c4)C(=O)Nc5ccc(cc5)C(C)C)c(ncn3)N"                                                                                                                                                     
13L SMILES           "OpenEye OEToolkits" 1.7.6 "CCC(=O)N1CCCC(C1)n2c3c(c(n2)c4cccc(c4)C(=O)Nc5ccc(cc5)C(C)C)c(ncn3)N"                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
13L "SYSTEMATIC NAME" ACDLabs              12.01 "3-{4-amino-1-[(3R)-1-propanoylpiperidin-3-yl]-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-N-[4-(propan-2-yl)phenyl]benzamide" 
13L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[4-azanyl-1-[(3R)-1-propanoylpiperidin-3-yl]pyrazolo[3,4-d]pyrimidin-3-yl]-N-(4-propan-2-ylphenyl)benzamide"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
13L "Create component" 2012-10-03 RCSB 
13L "Initial release"  2012-11-09 RCSB 
13L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            13L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
