data_2HL
# 
_chem_comp.id                                    2HL 
_chem_comp.name                                  "1-[(1-benzoylpiperidin-4-yl)methyl]-N-(pyridin-3-yl)-1H-benzimidazole-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H25 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-10-22 
_chem_comp.pdbx_modified_date                    2014-02-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        439.509 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2HL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4N9E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2HL C1  C1  C 0 1 Y N N 9.301  4.090  -5.825 8.658   -2.477 0.686  C1  2HL 1  
2HL C2  C2  C 0 1 Y N N 10.070 3.191  -6.539 7.358   -2.932 0.554  C2  2HL 2  
2HL C3  C3  C 0 1 Y N N 11.450 3.318  -6.543 6.405   -2.140 -0.054 C3  2HL 3  
2HL C4  C4  C 0 1 Y N N 12.053 4.346  -5.808 6.755   -0.878 -0.537 C4  2HL 4  
2HL C5  C5  C 0 1 Y N N 11.251 5.251  -5.089 8.069   -0.426 -0.401 C5  2HL 5  
2HL C6  C6  C 0 1 Y N N 9.876  5.125  -5.094 9.012   -1.227 0.209  C6  2HL 6  
2HL C7  C7  C 0 1 N N N 13.535 4.496  -5.799 5.740   -0.025 -1.189 C7  2HL 7  
2HL O8  O8  O 0 1 N N N 14.108 4.890  -6.803 6.063   0.720  -2.093 O8  2HL 8  
2HL N9  N9  N 0 1 N N N 14.265 4.197  -4.696 4.456   -0.074 -0.782 N9  2HL 9  
2HL C10 C10 C 0 1 N N N 15.729 4.361  -4.715 4.072   -0.876 0.388  C10 2HL 10 
2HL C11 C11 C 0 1 N N N 16.077 5.349  -3.590 3.307   0.019  1.369  C11 2HL 11 
2HL C12 C12 C 0 1 N N N 15.647 4.735  -2.247 2.131   0.676  0.643  C12 2HL 12 
2HL C13 C13 C 0 1 N N N 14.131 4.453  -2.207 2.657   1.550  -0.498 C13 2HL 13 
2HL C14 C14 C 0 1 N N N 13.635 3.698  -3.452 3.415   0.678  -1.497 C14 2HL 14 
2HL C15 C15 C 0 1 N N N 16.120 5.632  -1.082 1.345   1.544  1.628  C15 2HL 15 
2HL N16 N16 N 0 1 Y N N 15.345 6.857  -0.807 0.153   2.077  0.966  N16 2HL 16 
2HL C17 C17 C 0 1 Y N N 14.387 7.469  -1.565 0.043   3.291  0.359  C17 2HL 17 
2HL N18 N18 N 0 1 Y N N 13.933 8.527  -0.958 -1.154  3.442  -0.126 N18 2HL 18 
2HL C19 C19 C 0 1 Y N N 14.561 8.667  0.244  -1.895  2.334  0.137  C19 2HL 19 
2HL C20 C20 C 0 1 Y N N 15.467 7.605  0.352  -1.063  1.441  0.837  C20 2HL 20 
2HL C21 C21 C 0 1 Y N N 16.261 7.485  1.484  -1.550  0.203  1.240  C21 2HL 21 
2HL C22 C22 C 0 1 Y N N 16.154 8.395  2.499  -2.836  -0.153 0.957  C22 2HL 22 
2HL C23 C23 C 0 1 Y N N 15.281 9.485  2.384  -3.678  0.722  0.257  C23 2HL 23 
2HL C24 C24 C 0 1 Y N N 14.449 9.600  1.274  -3.210  1.969  -0.147 C24 2HL 24 
2HL C25 C25 C 0 1 N N N 15.081 10.400 3.519  -5.067  0.324  -0.044 C25 2HL 25 
2HL O26 O26 O 0 1 N N N 14.547 11.487 3.410  -5.799  1.082  -0.650 O26 2HL 26 
2HL N27 N27 N 0 1 N N N 15.407 9.834  4.706  -5.525  -0.880 0.354  N27 2HL 27 
2HL C28 C28 C 0 1 Y N N 15.196 10.294 6.006  -6.804  -1.302 -0.024 C28 2HL 28 
2HL C29 C29 C 0 1 Y N N 15.954 9.797  7.072  -7.389  -0.821 -1.193 C29 2HL 29 
2HL C30 C30 C 0 1 Y N N 15.610 10.234 8.342  -8.657  -1.269 -1.526 C30 2HL 30 
2HL C31 C31 C 0 1 Y N N 14.529 11.081 8.523  -9.295  -2.171 -0.694 C31 2HL 31 
2HL N32 N32 N 0 1 Y N N 13.805 11.498 7.499  -8.713  -2.607 0.406  N32 2HL 32 
2HL C33 C33 C 0 1 Y N N 14.093 11.115 6.273  -7.505  -2.211 0.757  C33 2HL 33 
2HL H1  H1  H 0 1 N N N 8.226  3.987  -5.835 9.399   -3.099 1.166  H1  2HL 34 
2HL H2  H2  H 0 1 N N N 9.597  2.393  -7.092 7.088   -3.908 0.928  H2  2HL 35 
2HL H3  H3  H 0 1 N N N 12.057 2.628  -7.110 5.391   -2.497 -0.156 H3  2HL 36 
2HL H4  H4  H 0 1 N N N 11.714 6.050  -4.529 8.346   0.550  -0.772 H4  2HL 37 
2HL H5  H5  H 0 1 N N N 9.258  5.817  -4.541 10.027  -0.876 0.318  H5  2HL 38 
2HL H6  H6  H 0 1 N N N 16.221 3.394  -4.536 3.433   -1.701 0.072  H6  2HL 39 
2HL H7  H7  H 0 1 N N N 16.053 4.763  -5.686 4.966   -1.268 0.872  H7  2HL 40 
2HL H8  H8  H 0 1 N N N 17.161 5.535  -3.582 2.934   -0.585 2.196  H8  2HL 41 
2HL H9  H9  H 0 1 N N N 15.544 6.297  -3.752 3.975   0.790  1.753  H9  2HL 42 
2HL H10 H10 H 0 1 N N N 16.163 3.769  -2.147 1.477   -0.096 0.238  H10 2HL 43 
2HL H11 H11 H 0 1 N N N 13.596 5.412  -2.141 1.820   2.036  -0.999 H11 2HL 44 
2HL H12 H12 H 0 1 N N N 13.909 3.847  -1.316 3.330   2.307  -0.096 H12 2HL 45 
2HL H13 H13 H 0 1 N N N 12.545 3.824  -3.532 3.876   1.310  -2.255 H13 2HL 46 
2HL H14 H14 H 0 1 N N N 13.874 2.630  -3.337 2.721   -0.018 -1.969 H14 2HL 47 
2HL H15 H15 H 0 1 N N N 16.104 5.020  -0.168 1.045   0.940  2.485  H15 2HL 48 
2HL H16 H16 H 0 1 N N N 17.154 5.938  -1.301 1.972   2.368  1.967  H16 2HL 49 
2HL H17 H17 H 0 1 N N N 14.053 7.123  -2.532 0.835   4.022  0.290  H17 2HL 50 
2HL H18 H18 H 0 1 N N N 16.966 6.670  1.563  -0.909  -0.479 1.779  H18 2HL 51 
2HL H19 H19 H 0 1 N N N 16.746 8.273  3.394  -3.208  -1.117 1.273  H19 2HL 52 
2HL H20 H20 H 0 1 N N N 13.727 10.401 1.211  -3.858  2.644  -0.687 H20 2HL 53 
2HL H21 H21 H 0 1 N N N 15.870 8.950  4.640  -4.967  -1.453 0.903  H21 2HL 54 
2HL H22 H22 H 0 1 N N N 16.768 9.106  6.913  -6.868  -0.117 -1.824 H22 2HL 55 
2HL H23 H23 H 0 1 N N N 16.188 9.912  9.195  -9.142  -0.918 -2.424 H23 2HL 56 
2HL H24 H24 H 0 1 N N N 14.273 11.407 9.520  -10.283 -2.524 -0.949 H24 2HL 57 
2HL H25 H25 H 0 1 N N N 13.466 11.440 5.456  -7.059  -2.593 1.663  H25 2HL 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2HL O8  C7  DOUB N N 1  
2HL C3  C2  DOUB Y N 2  
2HL C3  C4  SING Y N 3  
2HL C2  C1  SING Y N 4  
2HL C1  C6  DOUB Y N 5  
2HL C4  C7  SING N N 6  
2HL C4  C5  DOUB Y N 7  
2HL C7  N9  SING N N 8  
2HL C6  C5  SING Y N 9  
2HL C10 N9  SING N N 10 
2HL C10 C11 SING N N 11 
2HL N9  C14 SING N N 12 
2HL C11 C12 SING N N 13 
2HL C14 C13 SING N N 14 
2HL C12 C13 SING N N 15 
2HL C12 C15 SING N N 16 
2HL C17 N18 DOUB Y N 17 
2HL C17 N16 SING Y N 18 
2HL C15 N16 SING N N 19 
2HL N18 C19 SING Y N 20 
2HL N16 C20 SING Y N 21 
2HL C19 C20 DOUB Y N 22 
2HL C19 C24 SING Y N 23 
2HL C20 C21 SING Y N 24 
2HL C24 C23 DOUB Y N 25 
2HL C21 C22 DOUB Y N 26 
2HL C23 C22 SING Y N 27 
2HL C23 C25 SING N N 28 
2HL O26 C25 DOUB N N 29 
2HL C25 N27 SING N N 30 
2HL N27 C28 SING N N 31 
2HL C28 C33 DOUB Y N 32 
2HL C28 C29 SING Y N 33 
2HL C33 N32 SING Y N 34 
2HL C29 C30 DOUB Y N 35 
2HL N32 C31 DOUB Y N 36 
2HL C30 C31 SING Y N 37 
2HL C1  H1  SING N N 38 
2HL C2  H2  SING N N 39 
2HL C3  H3  SING N N 40 
2HL C5  H4  SING N N 41 
2HL C6  H5  SING N N 42 
2HL C10 H6  SING N N 43 
2HL C10 H7  SING N N 44 
2HL C11 H8  SING N N 45 
2HL C11 H9  SING N N 46 
2HL C12 H10 SING N N 47 
2HL C13 H11 SING N N 48 
2HL C13 H12 SING N N 49 
2HL C14 H13 SING N N 50 
2HL C14 H14 SING N N 51 
2HL C15 H15 SING N N 52 
2HL C15 H16 SING N N 53 
2HL C17 H17 SING N N 54 
2HL C21 H18 SING N N 55 
2HL C22 H19 SING N N 56 
2HL C24 H20 SING N N 57 
2HL N27 H21 SING N N 58 
2HL C29 H22 SING N N 59 
2HL C30 H23 SING N N 60 
2HL C31 H24 SING N N 61 
2HL C33 H25 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2HL SMILES           ACDLabs              12.01 "O=C(c1ccccc1)N5CCC(Cn3c4ccc(C(=O)Nc2cccnc2)cc4nc3)CC5"                                                                                                                         
2HL InChI            InChI                1.03  "InChI=1S/C26H25N5O2/c32-25(29-22-7-4-12-27-16-22)21-8-9-24-23(15-21)28-18-31(24)17-19-10-13-30(14-11-19)26(33)20-5-2-1-3-6-20/h1-9,12,15-16,18-19H,10-11,13-14,17H2,(H,29,32)" 
2HL InChIKey         InChI                1.03  UROBXDPDOFZURE-UHFFFAOYSA-N                                                                                                                                                     
2HL SMILES_CANONICAL CACTVS               3.385 "O=C(Nc1cccnc1)c2ccc3n(CC4CCN(CC4)C(=O)c5ccccc5)cnc3c2"                                                                                                                         
2HL SMILES           CACTVS               3.385 "O=C(Nc1cccnc1)c2ccc3n(CC4CCN(CC4)C(=O)c5ccccc5)cnc3c2"                                                                                                                         
2HL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(=O)N2CCC(CC2)Cn3cnc4c3ccc(c4)C(=O)Nc5cccnc5"                                                                                                                       
2HL SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(=O)N2CCC(CC2)Cn3cnc4c3ccc(c4)C(=O)Nc5cccnc5"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2HL "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(1-benzoylpiperidin-4-yl)methyl]-N-(pyridin-3-yl)-1H-benzimidazole-5-carboxamide"     
2HL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[[1-(phenylcarbonyl)piperidin-4-yl]methyl]-N-pyridin-3-yl-benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2HL "Create component" 2013-10-22 RCSB 
2HL "Initial release"  2014-02-19 RCSB 
# 
