data_4YL
# 
_chem_comp.id                                    4YL 
_chem_comp.name                                  "(2R,5R)-4-[2-(6-chloro-3,3-dimethyl-2,3-dihydro-1H-pyrrolo[3,2-c]pyridin-1-yl)-2-oxoethyl]-5-(methoxymethyl)-2-methylpiperazin-1-ium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H28 Cl N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-06-25 
_chem_comp.pdbx_modified_date                    2015-08-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        367.894 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4YL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5C84 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4YL C1  C1  C  0 1 N N N -13.882 -15.732 -4.403  2.481  1.686  3.623  C1   4YL 1  
4YL C3  C2  C  0 1 N N N -15.793 -16.306 -3.061  2.572  1.793  1.230  C3   4YL 2  
4YL C5  C3  C  0 1 N N N -15.472 -17.758 -1.029  4.548  0.739  0.120  C5   4YL 3  
4YL C7  C4  C  0 1 N N R -15.885 -20.212 -1.067  4.282  -1.299 -1.117 C7   4YL 4  
4YL C8  C5  C  0 1 N N N -15.381 -21.537 -0.518  4.768  -2.097 -2.329 C8   4YL 5  
4YL C11 C6  C  0 1 N N N -16.369 -18.844 -4.568  0.870  -0.028 -0.154 C11  4YL 6  
4YL C12 C7  C  0 1 N N N -15.103 -19.022 -5.389  0.148  -1.296 0.221  C12  4YL 7  
4YL C15 C8  C  0 1 N N N -16.503 -18.680 -7.454  -2.011 -2.497 0.582  C15  4YL 8  
4YL C16 C9  C  0 1 N N N -16.129 -18.528 -8.942  -3.470 -2.030 0.451  C16  4YL 9  
4YL C19 C10 C  0 1 Y N N -14.711 -19.066 -8.978  -3.369 -0.584 0.026  C19  4YL 10 
4YL C22 C11 C  0 1 Y N N -12.221 -20.011 -8.663  -2.724 1.949  -0.721 C22  4YL 11 
4YL C24 C12 C  0 1 Y N N -12.940 -19.742 -7.521  -1.704 1.056  -0.462 C24  4YL 12 
4YL C25 C13 C  0 1 Y N N -14.219 -19.256 -7.697  -2.024 -0.250 -0.078 C25  4YL 13 
4YL O2  O1  O  0 1 N N N -15.275 -16.079 -4.381  2.886  1.049  2.410  O2   4YL 14 
4YL C4  C14 C  0 1 N N R -15.389 -17.699 -2.552  3.048  1.020  -0.002 C4   4YL 15 
4YL N6  N1  N  1 1 N N N -15.045 -19.092 -0.526  5.001  -0.020 -1.053 N6   4YL 16 
4YL C9  C15 C  0 1 N N N -15.841 -20.161 -2.591  2.781  -1.036 -1.249 C9   4YL 17 
4YL N10 N2  N  0 1 N N N -16.174 -18.828 -3.110  2.320  -0.254 -0.093 N10  4YL 18 
4YL O13 O2  O  0 1 N N N -14.037 -19.276 -4.844  0.779  -2.290 0.512  O13  4YL 19 
4YL N14 N3  N  0 1 N N N -15.206 -18.886 -6.755  -1.199 -1.326 0.235  N14  4YL 20 
4YL C17 C16 C  0 1 N N N -17.077 -19.322 -9.835  -4.200 -2.850 -0.615 C17  4YL 21 
4YL C18 C17 C  0 1 N N N -16.158 -17.066 -9.366  -4.189 -2.141 1.797  C18  4YL 22 
4YL C20 C18 C  0 1 Y N N -13.899 -19.370 -10.056 -4.331 0.364  -0.248 C20  4YL 23 
4YL N21 N4  N  0 1 Y N N -12.661 -19.840 -9.900  -3.989 1.587  -0.609 N21  4YL 24 
4YL CL  CL  CL 0 0 N N N -10.600 -20.625 -8.516  -2.338 3.573  -1.198 CL23 4YL 25 
4YL H26 H1  H  0 1 N N N -13.559 -15.574 -5.443  2.979  2.652  3.710  H26  4YL 26 
4YL H27 H2  H  0 1 N N N -13.725 -14.808 -3.826  1.401  1.833  3.614  H27  4YL 27 
4YL H28 H3  H  0 1 N N N -13.294 -16.547 -3.956  2.756  1.059  4.471  H28  4YL 28 
4YL H29 H4  H  0 1 N N N -15.392 -15.542 -2.379  1.494  1.942  1.171  H29  4YL 29 
4YL H30 H5  H  0 1 N N N -16.890 -16.235 -3.086  3.071  2.761  1.267  H30  4YL 30 
4YL H32 H6  H  0 1 N N N -14.816 -16.985 -0.602  5.090  1.683  0.174  H32  4YL 31 
4YL H33 H7  H  0 1 N N N -16.510 -17.571 -0.717  4.737  0.160  1.023  H33  4YL 32 
4YL H36 H8  H  0 1 N N N -16.926 -20.068 -0.740  4.473  -1.869 -0.208 H36  4YL 33 
4YL H38 H9  H  0 1 N N N -15.433 -21.523 0.581   5.838  -2.285 -2.235 H38  4YL 34 
4YL H37 H10 H  0 1 N N N -16.006 -22.355 -0.904  4.236  -3.046 -2.377 H37  4YL 35 
4YL H39 H11 H  0 1 N N N -14.339 -21.692 -0.834  4.578  -1.527 -3.239 H39  4YL 36 
4YL H42 H12 H  0 1 N N N -16.832 -17.890 -4.860  0.590  0.263  -1.167 H42  4YL 37 
4YL H43 H13 H  0 1 N N N -17.051 -19.672 -4.811  0.596  0.766  0.541  H43  4YL 38 
4YL H45 H14 H  0 1 N N N -17.002 -17.772 -7.085  -1.804 -2.809 1.606  H45  4YL 39 
4YL H44 H15 H  0 1 N N N -17.164 -19.547 -7.307  -1.810 -3.314 -0.110 H44  4YL 40 
4YL H53 H16 H  0 1 N N N -12.524 -19.903 -6.537  -0.673 1.362  -0.555 H53  4YL 41 
4YL H31 H17 H  0 1 N N N -14.335 -17.853 -2.828  2.860  1.612  -0.897 H31  4YL 42 
4YL H35 H18 H  0 1 N N N -15.113 -19.094 0.472   4.815  0.512  -1.890 H35  4YL 43 
4YL H34 H19 H  0 1 N N N -14.094 -19.246 -0.796  5.992  -0.194 -0.979 H34  4YL 44 
4YL H40 H20 H  0 1 N N N -16.563 -20.888 -2.991  2.588  -0.478 -2.166 H40  4YL 45 
4YL H41 H21 H  0 1 N N N -14.828 -20.429 -2.926  2.246  -1.985 -1.282 H41  4YL 46 
4YL H48 H23 H  0 1 N N N -17.063 -20.380 -9.536  -4.188 -3.903 -0.334 H48  4YL 47 
4YL H46 H24 H  0 1 N N N -18.098 -18.925 -9.730  -5.231 -2.506 -0.695 H46  4YL 48 
4YL H47 H25 H  0 1 N N N -16.754 -19.233 -10.883 -3.699 -2.724 -1.575 H47  4YL 49 
4YL H50 H26 H  0 1 N N N -15.477 -16.485 -8.727  -3.682 -1.517 2.533  H50  4YL 50 
4YL H49 H27 H  0 1 N N N -15.838 -16.982 -10.415 -5.221 -1.807 1.687  H49  4YL 51 
4YL H51 H28 H  0 1 N N N -17.181 -16.675 -9.263  -4.178 -3.179 2.131  H51  4YL 52 
4YL H52 H29 H  0 1 N N N -14.280 -19.222 -11.056 -5.376 0.103  -0.168 H52  4YL 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4YL C20 N21 DOUB Y N 1  
4YL C20 C19 SING Y N 2  
4YL N21 C22 SING Y N 3  
4YL C17 C16 SING N N 4  
4YL C18 C16 SING N N 5  
4YL C19 C16 SING N N 6  
4YL C19 C25 DOUB Y N 7  
4YL C16 C15 SING N N 8  
4YL C22 CL  SING N N 9  
4YL C22 C24 DOUB Y N 10 
4YL C25 C24 SING Y N 11 
4YL C25 N14 SING N N 12 
4YL C15 N14 SING N N 13 
4YL N14 C12 SING N N 14 
4YL C12 O13 DOUB N N 15 
4YL C12 C11 SING N N 16 
4YL C11 N10 SING N N 17 
4YL C1  O2  SING N N 18 
4YL O2  C3  SING N N 19 
4YL N10 C9  SING N N 20 
4YL N10 C4  SING N N 21 
4YL C3  C4  SING N N 22 
4YL C9  C7  SING N N 23 
4YL C4  C5  SING N N 24 
4YL C7  N6  SING N N 25 
4YL C7  C8  SING N N 26 
4YL C5  N6  SING N N 27 
4YL C1  H26 SING N N 28 
4YL C1  H27 SING N N 29 
4YL C1  H28 SING N N 30 
4YL C3  H29 SING N N 31 
4YL C3  H30 SING N N 32 
4YL C5  H32 SING N N 33 
4YL C5  H33 SING N N 34 
4YL C7  H36 SING N N 35 
4YL C8  H38 SING N N 36 
4YL C8  H37 SING N N 37 
4YL C8  H39 SING N N 38 
4YL C11 H42 SING N N 39 
4YL C11 H43 SING N N 40 
4YL C15 H45 SING N N 41 
4YL C15 H44 SING N N 42 
4YL C24 H53 SING N N 43 
4YL C4  H31 SING N N 44 
4YL N6  H35 SING N N 45 
4YL N6  H34 SING N N 46 
4YL C9  H40 SING N N 47 
4YL C9  H41 SING N N 48 
4YL C17 H48 SING N N 49 
4YL C17 H46 SING N N 50 
4YL C17 H47 SING N N 51 
4YL C18 H50 SING N N 52 
4YL C18 H49 SING N N 53 
4YL C18 H51 SING N N 54 
4YL C20 H52 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4YL SMILES           ACDLabs              12.01 "COCC3C[NH2+]C(C)CN3CC(=O)N2CC(c1c2cc(Cl)nc1)(C)C"                                                                                                   
4YL InChI            InChI                1.03  "InChI=1S/C18H27ClN4O2/c1-12-8-22(13(6-20-12)10-25-4)9-17(24)23-11-18(2,3)14-7-21-16(19)5-15(14)23/h5,7,12-13,20H,6,8-11H2,1-4H3/p+1/t12-,13-/m1/s1" 
4YL InChIKey         InChI                1.03  CQGZTNZASZVTQR-CHWSQXEVSA-O                                                                                                                          
4YL SMILES_CANONICAL CACTVS               3.385 "COC[C@H]1C[NH2+][C@H](C)CN1CC(=O)N2CC(C)(C)c3cnc(Cl)cc23"                                                                                           
4YL SMILES           CACTVS               3.385 "COC[CH]1C[NH2+][CH](C)CN1CC(=O)N2CC(C)(C)c3cnc(Cl)cc23"                                                                                             
4YL SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1CN([C@H](C[NH2+]1)COC)CC(=O)N2CC(c3c2cc(nc3)Cl)(C)C"                                                                                        
4YL SMILES           "OpenEye OEToolkits" 1.9.2 "CC1CN(C(C[NH2+]1)COC)CC(=O)N2CC(c3c2cc(nc3)Cl)(C)C"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4YL "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,5R)-4-[2-(6-chloro-3,3-dimethyl-2,3-dihydro-1H-pyrrolo[3,2-c]pyridin-1-yl)-2-oxoethyl]-5-(methoxymethyl)-2-methylpiperazin-1-ium" 
4YL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-(6-chloranyl-3,3-dimethyl-2H-pyrrolo[3,2-c]pyridin-1-yl)-2-[(2R,5R)-2-(methoxymethyl)-5-methyl-piperazin-4-ium-1-yl]ethanone"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4YL "Create component" 2015-06-25 EBI  
4YL "Initial release"  2015-08-12 RCSB 
# 
