data_D0L
#

_chem_comp.id                                   D0L
_chem_comp.name                                 "(2S)-2-[[(2S)-1-heptylpyrrolidin-2-yl]carbonylamino]-3-phenyl-propanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H32 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-29
_chem_comp.pdbx_modified_date                   2020-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       360.490
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D0L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6K58
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D0L  C1   C1   C  0  1  Y  N  N  13.992  31.300   -3.834  -3.510  -1.835   1.504  C1   D0L   1  
D0L  C2   C2   C  0  1  Y  N  N  15.200  30.694   -3.519  -3.839  -1.798   0.162  C2   D0L   2  
D0L  C15  C3   C  0  1  N  N  N  18.047  25.933   -6.976   2.105   0.569   0.757  C15  D0L   3  
D0L  C14  C4   C  0  1  N  N  N  18.819  28.186   -7.304   1.727   2.884   1.375  C14  D0L   4  
D0L  C7   C5   C  0  1  N  N  N  15.265  29.418   -2.709  -4.348  -0.520  -0.454  C7   D0L   5  
D0L  C12  C6   C  0  1  N  N  N  19.569  28.512   -5.099  -0.671   2.745   1.688  C12  D0L   6  
D0L  C10  C7   C  0  1  N  N  N  17.579  27.440   -4.065  -1.017   0.986  -0.068  C10  D0L   7  
D0L  C3   C8   C  0  1  Y  N  N  16.378  31.207   -4.005  -3.702  -2.933  -0.615  C3   D0L   8  
D0L  C13  C9   C  0  1  N  N  N  19.205  29.295   -6.357   0.611   3.316   2.350  C13  D0L   9  
D0L  C11  C10  C  0  1  N  N  S  18.618  27.284   -5.115  -0.147   1.418   1.085  C11  D0L  10  
D0L  C6   C11  C  0  1  Y  N  N  13.980  32.456   -4.582  -3.039  -3.006   2.068  C6   D0L  11  
D0L  C8   C12  C  0  1  N  N  S  15.256  28.143   -3.583  -3.167   0.296  -0.984  C8   D0L  12  
D0L  C5   C13  C  0  1  Y  N  N  15.180  32.968   -5.084  -2.896  -4.139   1.290  C5   D0L  13  
D0L  C9   C14  C  0  1  N  N  N  14.010  28.155   -4.379  -3.681   1.513  -1.708  C9   D0L  14  
D0L  C4   C15  C  0  1  Y  N  N  16.373  32.352   -4.800  -3.236  -4.105  -0.049  C4   D0L  15  
D0L  O2   O1   O  0  1  N  N  N  14.071  28.019   -5.627  -3.374   2.618  -1.327  O2   D0L  16  
D0L  O3   O2   O  0  1  N  N  N  17.890  27.142   -2.905  -0.543   0.882  -1.179  O3   D0L  17  
D0L  O1   O3   O  0  1  N  N  N  12.945  28.293   -3.743  -4.482   1.370  -2.776  O1   D0L  18  
D0L  N2   N1   N  0  1  N  N  N  18.024  27.293   -6.462   1.218   1.730   0.611  N2   D0L  19  
D0L  C16  C16  C  0  1  N  N  N  17.009  25.051   -6.306   3.419   0.835   0.021  C16  D0L  20  
D0L  C17  C17  C  0  1  N  N  N  16.942  23.739   -7.056   4.343  -0.375   0.173  C17  D0L  21  
D0L  C18  C18  C  0  1  N  N  N  15.541  23.290   -7.312   5.657  -0.109  -0.563  C18  D0L  22  
D0L  C19  C19  C  0  1  N  N  N  15.418  22.354   -8.527   6.582  -1.319  -0.411  C19  D0L  23  
D0L  C20  C20  C  0  1  N  N  N  16.457  21.244   -8.592   7.896  -1.053  -1.148  C20  D0L  24  
D0L  C21  C21  C  0  1  N  N  N  16.118  20.120   -9.569   8.820  -2.263  -0.996  C21  D0L  25  
D0L  N1   N2   N  0  1  N  N  N  16.412  27.944   -4.434  -2.321   0.715   0.137  N1   D0L  26  
D0L  H1   H1   H  0  1  N  N  N  13.064  30.866   -3.493  -3.618  -0.948   2.111  H1   D0L  27  
D0L  H2   H2   H  0  1  N  N  N  17.846  25.959   -8.057   2.309   0.398   1.814  H2   D0L  28  
D0L  H3   H3   H  0  1  N  N  N  19.044  25.504   -6.799   1.623  -0.312   0.334  H3   D0L  29  
D0L  H4   H4   H  0  1  N  N  N  19.710  27.672   -7.694   1.964   3.703   0.697  H4   D0L  30  
D0L  H5   H5   H  0  1  N  N  N  18.222  28.573   -8.143   2.616   2.594   1.935  H5   D0L  31  
D0L  H6   H6   H  0  1  N  N  N  14.396  29.387   -2.035  -5.023  -0.757  -1.276  H6   D0L  32  
D0L  H7   H7   H  0  1  N  N  N  16.190  29.428   -2.114  -4.881   0.060   0.299  H7   D0L  33  
D0L  H8   H8   H  0  1  N  N  N  20.620  28.190   -5.132  -1.444   2.557   2.433  H8   D0L  34  
D0L  H9   H9   H  0  1  N  N  N  19.401  29.122   -4.199  -1.037   3.412   0.907  H9   D0L  35  
D0L  H10  H10  H  0  1  N  N  N  17.313  30.721   -3.770  -3.958  -2.904  -1.663  H10  D0L  36  
D0L  H11  H11  H  0  1  N  N  N  20.065  29.866   -6.737   0.766   2.873   3.334  H11  D0L  37  
D0L  H12  H12  H  0  1  N  N  N  18.363  29.978   -6.175   0.558   4.402   2.419  H12  D0L  38  
D0L  H13  H13  H  0  1  N  N  N  19.199  26.364   -4.951  -0.117   0.640   1.849  H13  D0L  39  
D0L  H14  H14  H  0  1  N  N  N  13.048  32.965   -4.780  -2.782  -3.034   3.117  H14  D0L  40  
D0L  H15  H15  H  0  1  N  N  N  15.197  27.289   -2.892  -2.582  -0.316  -1.671  H15  D0L  41  
D0L  H16  H16  H  0  1  N  N  N  15.168  33.855   -5.700  -2.532  -5.055   1.732  H16  D0L  42  
D0L  H17  H17  H  0  1  N  N  N  17.299  32.750   -5.189  -3.124  -4.991  -0.658  H17  D0L  43  
D0L  H18  H18  H  0  1  N  N  N  12.211  28.278   -4.346  -4.787   2.180  -3.208  H18  D0L  44  
D0L  H20  H20  H  0  1  N  N  N  16.027  25.546   -6.334   3.215   1.006  -1.036  H20  D0L  45  
D0L  H21  H21  H  0  1  N  N  N  17.297  24.867   -5.260   3.901   1.716   0.445  H21  D0L  46  
D0L  H22  H22  H  0  1  N  N  N  17.455  22.968   -6.462   4.547  -0.546   1.230  H22  D0L  47  
D0L  H23  H23  H  0  1  N  N  N  17.454  23.860   -8.022   3.861  -1.256  -0.251  H23  D0L  48  
D0L  H24  H24  H  0  1  N  N  N  14.916  24.178   -7.490   5.453   0.062  -1.620  H24  D0L  49  
D0L  H25  H25  H  0  1  N  N  N  15.176  22.757   -6.422   6.140   0.772  -0.140  H25  D0L  50  
D0L  H26  H26  H  0  1  N  N  N  15.512  22.963   -9.438   6.786  -1.489   0.646  H26  D0L  51  
D0L  H27  H27  H  0  1  N  N  N  14.422  21.888   -8.499   6.100  -2.200  -0.835  H27  D0L  52  
D0L  H28  H28  H  0  1  N  N  N  16.558  20.808   -7.587   7.692  -0.882  -2.205  H28  D0L  53  
D0L  H29  H29  H  0  1  N  N  N  17.416  21.688   -8.897   8.378  -0.172  -0.724  H29  D0L  54  
D0L  H30  H30  H  0  1  N  N  N  16.918  19.365   -9.552   9.024  -2.433   0.062  H30  D0L  55  
D0L  H31  H31  H  0  1  N  N  N  15.167  19.653   -9.274   8.338  -3.144  -1.419  H31  D0L  56  
D0L  H32  H32  H  0  1  N  N  N  16.025  20.533  -10.584   9.756  -2.073  -1.520  H32  D0L  57  
D0L  H33  H33  H  0  1  N  N  N  16.319  28.213   -5.393  -2.701   0.798   1.026  H33  D0L  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D0L  C21  C20  SING  N  N   1  
D0L  C20  C19  SING  N  N   2  
D0L  C19  C18  SING  N  N   3  
D0L  C18  C17  SING  N  N   4  
D0L  C14  N2   SING  N  N   5  
D0L  C14  C13  SING  N  N   6  
D0L  C17  C16  SING  N  N   7  
D0L  C15  N2   SING  N  N   8  
D0L  C15  C16  SING  N  N   9  
D0L  N2   C11  SING  N  N  10  
D0L  C13  C12  SING  N  N  11  
D0L  O2   C9   DOUB  N  N  12  
D0L  C11  C12  SING  N  N  13  
D0L  C11  C10  SING  N  N  14  
D0L  C5   C4   DOUB  Y  N  15  
D0L  C5   C6   SING  Y  N  16  
D0L  C4   C3   SING  Y  N  17  
D0L  C6   C1   DOUB  Y  N  18  
D0L  N1   C10  SING  N  N  19  
D0L  N1   C8   SING  N  N  20  
D0L  C9   O1   SING  N  N  21  
D0L  C9   C8   SING  N  N  22  
D0L  C10  O3   DOUB  N  N  23  
D0L  C3   C2   DOUB  Y  N  24  
D0L  C1   C2   SING  Y  N  25  
D0L  C8   C7   SING  N  N  26  
D0L  C2   C7   SING  N  N  27  
D0L  C1   H1   SING  N  N  28  
D0L  C15  H2   SING  N  N  29  
D0L  C15  H3   SING  N  N  30  
D0L  C14  H4   SING  N  N  31  
D0L  C14  H5   SING  N  N  32  
D0L  C7   H6   SING  N  N  33  
D0L  C7   H7   SING  N  N  34  
D0L  C12  H8   SING  N  N  35  
D0L  C12  H9   SING  N  N  36  
D0L  C3   H10  SING  N  N  37  
D0L  C13  H11  SING  N  N  38  
D0L  C13  H12  SING  N  N  39  
D0L  C11  H13  SING  N  N  40  
D0L  C6   H14  SING  N  N  41  
D0L  C8   H15  SING  N  N  42  
D0L  C5   H16  SING  N  N  43  
D0L  C4   H17  SING  N  N  44  
D0L  O1   H18  SING  N  N  45  
D0L  C16  H20  SING  N  N  46  
D0L  C16  H21  SING  N  N  47  
D0L  C17  H22  SING  N  N  48  
D0L  C17  H23  SING  N  N  49  
D0L  C18  H24  SING  N  N  50  
D0L  C18  H25  SING  N  N  51  
D0L  C19  H26  SING  N  N  52  
D0L  C19  H27  SING  N  N  53  
D0L  C20  H28  SING  N  N  54  
D0L  C20  H29  SING  N  N  55  
D0L  C21  H30  SING  N  N  56  
D0L  C21  H31  SING  N  N  57  
D0L  C21  H32  SING  N  N  58  
D0L  N1   H33  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D0L  InChI             InChI                 1.03   "InChI=1S/C21H32N2O3/c1-2-3-4-5-9-14-23-15-10-13-19(23)20(24)22-18(21(25)26)16-17-11-7-6-8-12-17/h6-8,11-12,18-19H,2-5,9-10,13-16H2,1H3,(H,22,24)(H,25,26)/t18-,19-/m0/s1"  
D0L  InChIKey          InChI                 1.03   UZXMNGCHFSENBI-OALUTQOASA-N  
D0L  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCN1CCC[C@H]1C(=O)N[C@@H](Cc2ccccc2)C(O)=O"  
D0L  SMILES            CACTVS                3.385  "CCCCCCCN1CCC[CH]1C(=O)N[CH](Cc2ccccc2)C(O)=O"  
D0L  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCN1CCC[C@H]1C(=O)N[C@@H](Cc2ccccc2)C(=O)O"  
D0L  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCN1CCCC1C(=O)NC(Cc2ccccc2)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          D0L
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-1-heptylpyrrolidin-2-yl]carbonylamino]-3-phenyl-propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D0L  "Create component"  2019-05-29  PDBJ  
D0L  "Initial release"   2020-03-18  RCSB  
##
