data_L1L
#

_chem_comp.id                                   L1L
_chem_comp.name                                 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H14 N O8 P"
_chem_comp.mon_nstd_parent_comp_id              PA1
_chem_comp.pdbx_synonyms                        
;[(2R,3R,4R,5S,6R)-3-azanyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] dihydrogen phosphate;
2-amino-2-deoxy-1-O-phosphono-alpha-D-glucose; 2-amino-2-deoxy-1-O-phosphono-D-glucose;
2-amino-2-deoxy-1-O-phosphono-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-02-09
_chem_comp.pdbx_modified_date                   2020-08-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     GP1
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       259.151
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L1L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5FVN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  L1L  "[(2R,3R,4R,5S,6R)-3-azanyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] dihydrogen phosphate"  PDB  ?  
2  L1L  2-amino-2-deoxy-1-O-phosphono-alpha-D-glucose                                                    PDB  ?  
3  L1L  2-amino-2-deoxy-1-O-phosphono-D-glucose                                                          PDB  ?  
4  L1L  2-amino-2-deoxy-1-O-phosphono-glucose                                                            PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L1L  O9    O9    O  0  1  N  N  N  22.775  -37.610  16.920   3.122  -0.220  -1.713  O9    L1L   1  
L1L  P     P     P  0  1  N  N  N  22.777  -38.866  17.761   2.502   0.002  -0.244  P     L1L   2  
L1L  O2    O2    O  0  1  N  N  N  21.408  -39.147  18.314   3.274  -0.786   0.742  O2    L1L   3  
L1L  O8    O8    O  0  1  N  N  N  23.264  -40.040  16.941   2.577   1.564   0.140  O8    L1L   4  
L1L  O6    O6    O  0  1  N  N  N  28.588  -39.615  18.706  -0.957   3.468   0.304  O6    L1L   5  
L1L  C6    C6    C  0  1  N  N  N  27.861  -38.631  17.946  -1.977   2.468   0.279  C6    L1L   6  
L1L  C5    C5    C  0  1  N  N  R  26.629  -38.307  18.758  -1.345   1.100   0.015  C5    L1L   7  
L1L  O5    O5    O  0  1  N  N  N  25.857  -39.505  18.876  -0.497   0.748   1.110  O5    L1L   8  
L1L  C1    C1    C  0  1  N  N  R  24.608  -39.367  19.563   0.168  -0.508   0.953  C1    L1L   9  
L1L  O1    O1    O  0  1  N  N  N  23.697  -38.493  18.867   0.966  -0.480  -0.233  O1    L1L  10  
L1L  C4    C4    C  0  1  N  N  S  27.031  -37.808  20.141  -2.447   0.048  -0.135  C4    L1L  11  
L1L  O4    O4    O  0  1  N  N  N  27.759  -36.575  20.026  -3.261   0.367  -1.265  O4    L1L  12  
L1L  C3    C3    C  0  1  N  N  R  25.802  -37.640  21.002  -1.804  -1.328  -0.339  C3    L1L  13  
L1L  O3    O3    O  0  1  N  N  N  26.249  -37.431  22.348  -2.824  -2.326  -0.406  O3    L1L  14  
L1L  C2    C2    C  0  1  N  N  R  24.906  -38.876  20.976  -0.873  -1.624   0.841  C2    L1L  15  
L1L  N2    N2    N  0  1  N  N  N  23.668  -38.564  21.663  -0.195  -2.908   0.620  N2    L1L  16  
L1L  H9    H9    H  0  1  N  N  N  21.900  -37.240  16.905   4.048   0.050  -1.794  H9    L1L  17  
L1L  H8    H8    H  0  1  N  N  N  22.603  -40.722  16.941   2.092   2.142  -0.465  H8    L1L  18  
L1L  HO6   H6    H  0  1  N  Y  N  29.379  -39.857  18.238  -1.287   4.362   0.467  HO6   L1L  19  
L1L  H61   H61C  H  0  1  N  N  N  28.474  -37.728  17.804  -2.493   2.450   1.239  H61   L1L  20  
L1L  H62   H62C  H  0  1  N  N  N  27.576  -39.039  16.965  -2.691   2.697  -0.513  H62   L1L  21  
L1L  H5    H5    H  0  1  N  N  N  26.050  -37.525  18.246  -0.756   1.143  -0.902  H5    L1L  22  
L1L  H4    H4    H  0  1  N  N  N  27.676  -38.569  20.605  -3.061   0.034   0.765  H4    L1L  23  
L1L  H1    H1    H  0  1  N  N  N  24.142  -40.360  19.650   0.807  -0.691   1.817  H1    L1L  24  
L1L  H2    H2    H  0  1  N  N  N  25.423  -39.683  21.516  -1.456  -1.673   1.761  H2    L1L  25  
L1L  HO4   HA    H  0  1  N  Y  N  28.006  -36.271  20.891  -3.696   1.228  -1.206  HO4   L1L  26  
L1L  H3    H3    H  0  1  N  N  N  25.227  -36.771  20.650  -1.231  -1.329  -1.266  H3    L1L  27  
L1L  HO3   HB    H  0  1  N  Y  N  25.497  -37.321  22.918  -3.455  -2.197  -1.128  HO3   L1L  28  
L1L  HN21  H21N  H  0  0  N  N  N  23.871  -38.243  22.588   0.429  -3.123   1.383  HN21  L1L  29  
L1L  HN22  H22N  H  0  0  N  Y  N  23.180  -37.849  21.162  -0.863  -3.651   0.479  HN22  L1L  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L1L  O9  P     SING  N  N   1  
L1L  P   O2    DOUB  N  N   2  
L1L  P   O8    SING  N  N   3  
L1L  P   O1    SING  N  N   4  
L1L  O6  C6    SING  N  N   5  
L1L  C6  C5    SING  N  N   6  
L1L  C5  O5    SING  N  N   7  
L1L  C5  C4    SING  N  N   8  
L1L  O5  C1    SING  N  N   9  
L1L  C1  O1    SING  N  N  10  
L1L  C1  C2    SING  N  N  11  
L1L  C4  O4    SING  N  N  12  
L1L  C4  C3    SING  N  N  13  
L1L  C3  O3    SING  N  N  14  
L1L  C3  C2    SING  N  N  15  
L1L  C2  N2    SING  N  N  16  
L1L  O9  H9    SING  N  N  17  
L1L  O8  H8    SING  N  N  18  
L1L  O6  HO6   SING  N  N  19  
L1L  C6  H61   SING  N  N  20  
L1L  C6  H62   SING  N  N  21  
L1L  C5  H5    SING  N  N  22  
L1L  C4  H4    SING  N  N  23  
L1L  C1  H1    SING  N  N  24  
L1L  C2  H2    SING  N  N  25  
L1L  O4  HO4   SING  N  N  26  
L1L  C3  H3    SING  N  N  27  
L1L  O3  HO3   SING  N  N  28  
L1L  N2  HN21  SING  N  N  29  
L1L  N2  HN22  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L1L  InChI             InChI                 1.03   "InChI=1S/C6H14NO8P/c7-3-5(10)4(9)2(1-8)14-6(3)15-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6-/m1/s1"  
L1L  InChIKey          InChI                 1.03   YMJBYRVFGYXULK-QZABAPFNSA-N  
L1L  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[P](O)(O)=O"  
L1L  SMILES            CACTVS                3.385  "N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[P](O)(O)=O"  
L1L  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)N)O)O)O"  
L1L  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(C(O1)OP(=O)(O)O)N)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          L1L
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "[(2R,3R,4R,5S,6R)-3-azanyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] dihydrogen phosphate"
#
_pdbx_chem_comp_related.comp_id            L1L
_pdbx_chem_comp_related.related_comp_id    PA1
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  L1L  C1    PA1  C1    "Carbohydrate core"  
 2  L1L  C2    PA1  C2    "Carbohydrate core"  
 3  L1L  C3    PA1  C3    "Carbohydrate core"  
 4  L1L  C4    PA1  C4    "Carbohydrate core"  
 5  L1L  C5    PA1  C5    "Carbohydrate core"  
 6  L1L  C6    PA1  C6    "Carbohydrate core"  
 7  L1L  N2    PA1  N2    "Carbohydrate core"  
 8  L1L  O1    PA1  O1    "Carbohydrate core"  
 9  L1L  O3    PA1  O3    "Carbohydrate core"  
10  L1L  O4    PA1  O4    "Carbohydrate core"  
11  L1L  O5    PA1  O5    "Carbohydrate core"  
12  L1L  O6    PA1  O6    "Carbohydrate core"  
13  L1L  H1    PA1  H1    "Carbohydrate core"  
14  L1L  H2    PA1  H2    "Carbohydrate core"  
15  L1L  HN21  PA1  HN21  "Carbohydrate core"  
16  L1L  HN22  PA1  HN22  "Carbohydrate core"  
17  L1L  H3    PA1  H3    "Carbohydrate core"  
18  L1L  H4    PA1  H4    "Carbohydrate core"  
19  L1L  H5    PA1  H5    "Carbohydrate core"  
20  L1L  HO6   PA1  HO6   "Carbohydrate core"  
21  L1L  H61   PA1  H61   "Carbohydrate core"  
22  L1L  H62   PA1  H62   "Carbohydrate core"  
23  L1L  HO4   PA1  HO4   "Carbohydrate core"  
24  L1L  HO3   PA1  HO3   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
L1L  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
L1L  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
L1L  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
L1L  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L1L  "Create component"          2016-02-09  EBI   
L1L  "Initial release"           2016-08-10  RCSB  
L1L  "Other modification"        2020-07-03  RCSB  
L1L  "Modify parent residue"     2020-07-17  RCSB  
L1L  "Modify name"               2020-07-17  RCSB  
L1L  "Modify synonyms"           2020-07-17  RCSB  
L1L  "Modify linking type"       2020-07-17  RCSB  
L1L  "Modify atom id"            2020-07-17  RCSB  
L1L  "Modify component atom id"  2020-07-17  RCSB  
L1L  "Modify leaving atom flag"  2020-07-17  RCSB  
L1L  "Obsolete component"        2020-08-11  RCSB  
##
