data_OML
# 
_chem_comp.id                                    OML 
_chem_comp.name                                  "(1R,2S,3R,4R)-5-fluoro-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H11 F O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         C5a-fluoro-valienide 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        194.158 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OML 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UZ2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OML O6  O1  O 0 1 N N N N N N 21.798 76.897 7.128  -3.327 -0.012 -0.120 O6  OML 1  
OML C6  C1  C 0 1 N N N N N N 21.701 75.474 7.095  -2.377 1.054  -0.169 C6  OML 2  
OML C5  C2  C 0 1 N N N N N N 20.430 74.953 7.727  -0.982 0.485  -0.183 C5  OML 3  
OML C5A C3  C 0 1 N N N N N N 20.499 74.541 8.979  -0.851 -0.806 -0.151 C5A OML 4  
OML F5A F1  F 0 1 N N N N N N 21.680 74.601 9.635  -1.974 -1.556 -0.116 F5A OML 5  
OML C1  C4  C 0 1 N N R N N N 19.323 74.165 9.826  0.471  -1.516 -0.150 C1  OML 6  
OML C2  C5  C 0 1 N N R N N N 18.029 74.766 9.262  1.579  -0.567 -0.613 C2  OML 7  
OML O2  O2  O 0 1 N N N N N N 16.910 74.143 9.871  2.855  -1.165 -0.372 O2  OML 8  
OML C3  C6  C 0 1 N N S N N N 17.938 74.487 7.782  1.463  0.739  0.182  C3  OML 9  
OML O3  O3  O 0 1 N N N N N N 16.643 74.917 7.308  2.585  1.577  -0.104 O3  OML 10 
OML C4  C7  C 0 1 N N R N N N 19.090 75.170 7.032  0.170  1.445  -0.239 C4  OML 11 
OML O4  O4  O 0 1 N N N N N N 19.084 74.782 5.639  -0.080 2.537  0.648  O4  OML 12 
OML H1  H1  H 0 1 N N N N N N 22.612 77.169 6.720  -4.248 0.281  -0.109 H1  OML 13 
OML H2  H2  H 0 1 N N N N N N 21.731 75.145 6.046  -2.538 1.643  -1.072 H2  OML 14 
OML H3  H3  H 0 1 N N N N N N 22.560 75.052 7.636  -2.501 1.691  0.707  H3  OML 15 
OML H4  H4  H 0 1 N N N N N N 19.474 74.534 10.851 0.422  -2.371 -0.825 H4  OML 16 
OML H6  H6  H 0 1 N N N N N N 18.022 75.852 9.438  1.466  -0.363 -1.678 H6  OML 17 
OML H7  H7  H 0 1 N N N N N N 16.932 74.297 10.808 2.989  -2.004 -0.832 H7  OML 18 
OML H8  H8  H 0 1 N N N N N N 18.033 73.402 7.631  1.434  0.517  1.249  H8  OML 19 
OML H9  H9  H 0 1 N N N N N N 15.962 74.471 7.798  2.576  2.421  0.367  H9  OML 20 
OML H10 H10 H 0 1 N N N N N N 18.889 76.251 7.073  0.276  1.824  -1.255 H10 OML 21 
OML H11 H11 H 0 1 N N N N N N 18.224 74.943 5.269  -0.881 3.038  0.438  H11 OML 22 
OML O1  O5  O 0 1 N Y N N N N 19.198 72.693 9.835  0.763  -1.972 1.172  O1  OML 23 
OML H5  H5  H 0 1 N Y N N N N 18.454 72.441 10.370 0.108  -2.587 1.530  H5  OML 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OML O4  C4  SING N N 1  
OML C4  C5  SING N N 2  
OML C4  C3  SING N N 3  
OML C6  O6  SING N N 4  
OML C6  C5  SING N N 5  
OML O3  C3  SING N N 6  
OML C5  C5A DOUB N N 7  
OML C3  C2  SING N N 8  
OML C5A F5A SING N N 9  
OML C5A C1  SING N N 10 
OML C2  C1  SING N N 11 
OML C2  O2  SING N N 12 
OML O6  H1  SING N N 13 
OML C6  H2  SING N N 14 
OML C6  H3  SING N N 15 
OML C1  H4  SING N N 16 
OML C2  H6  SING N N 17 
OML O2  H7  SING N N 18 
OML C3  H8  SING N N 19 
OML O3  H9  SING N N 20 
OML C4  H10 SING N N 21 
OML O4  H11 SING N N 22 
OML C1  O1  SING N N 23 
OML O1  H5  SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OML SMILES           ACDLabs              12.01 "OC1C(CO)=C(F)C(O)C(O)C1O"                                                             
OML InChI            InChI                1.03  "InChI=1S/C7H11FO5/c8-3-2(1-9)4(10)6(12)7(13)5(3)11/h4-7,9-13H,1H2/t4-,5+,6+,7+/m1/s1" 
OML InChIKey         InChI                1.03  SSCXFYOTIWXWGR-BWBBJGPYSA-N                                                            
OML SMILES_CANONICAL CACTVS               3.385 "OCC1=C(F)[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O"                                           
OML SMILES           CACTVS               3.385 "OCC1=C(F)[CH](O)[CH](O)[CH](O)[CH]1O"                                                 
OML SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C1=C([C@@H]([C@@H]([C@H]([C@@H]1O)O)O)O)F)O"                                        
OML SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1=C(C(C(C(C1O)O)O)O)F)O"                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OML "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,3R,4R)-5-fluoro-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol"                
OML "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},3~{R},4~{R})-5-fluoranyl-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OML "Create component" 2022-05-12 RCSB 
OML "Modify synonyms"  2022-05-16 RCSB 
OML "Initial release"  2023-04-05 RCSB 
OML "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      OML 
_pdbx_chem_comp_synonyms.name         C5a-fluoro-valienide 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OML 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
