data_WFL
# 
_chem_comp.id                                    WFL 
_chem_comp.name                                  "5'-O-[(R)-(butylamino)(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H23 N6 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-02 
_chem_comp.pdbx_modified_date                    2024-10-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        402.343 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WFL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UB1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WFL O2P   O1  O 0 1 N N N N N N -40.194 -14.011 22.819 4.928  2.079  0.383  O2P   WFL 1  
WFL P     P1  P 0 1 N N N N N N -38.971 -13.120 22.638 4.270  0.910  -0.242 P     WFL 2  
WFL O1P   O2  O 0 1 N N N N N N -38.432 -12.745 24.003 5.006  0.559  -1.630 O1P   WFL 3  
WFL N     N1  N 0 1 N N N N N N -37.790 -13.885 21.730 4.372  -0.411 0.797  N     WFL 4  
WFL CA    C1  C 0 1 N N N N N N -36.693 -14.623 22.335 3.728  -1.593 0.208  CA    WFL 5  
WFL CB    C2  C 0 1 N N N N N N -35.495 -13.747 22.595 4.627  -2.815 0.406  CB    WFL 6  
WFL CC    C3  C 0 1 N N N N N N -35.596 -12.234 22.644 3.957  -4.047 -0.206 CC    WFL 7  
WFL CD    C4  C 0 1 N N N N N N -34.404 -11.346 22.960 4.856  -5.268 -0.008 CD    WFL 8  
WFL "O5'" O3  O 0 1 N N N N N N -39.398 -11.786 21.838 2.723  1.252  -0.525 "O5'" WFL 9  
WFL "C5'" C5  C 0 1 N N N N N N -38.705 -11.371 20.660 1.880  1.898  0.432  "C5'" WFL 10 
WFL "C4'" C6  C 0 1 N N R N N N -39.415 -11.829 19.381 0.479  2.070  -0.157 "C4'" WFL 11 
WFL "C3'" C7  C 0 1 N N S N N N -40.265 -13.106 19.470 -0.415 2.877  0.810  "C3'" WFL 12 
WFL "O3'" O4  O 0 1 N N N N N N -41.669 -12.800 19.509 -0.473 4.249  0.413  "O3'" WFL 13 
WFL "C2'" C8  C 0 1 N N R N N N -39.913 -13.920 18.235 -1.805 2.216  0.677  "C2'" WFL 14 
WFL "O2'" O5  O 0 1 N N N N N N -41.109 -14.434 17.623 -2.764 3.160  0.196  "O2'" WFL 15 
WFL "C1'" C9  C 0 1 N N R N N N -39.142 -12.906 17.383 -1.586 1.088  -0.356 "C1'" WFL 16 
WFL "O4'" O6  O 0 1 N N N N N N -38.451 -12.097 18.345 -0.175 0.789  -0.283 "O4'" WFL 17 
WFL N9    N2  N 0 1 Y N N N N N -38.302 -13.432 16.242 -2.377 -0.092 0.003  N9    WFL 18 
WFL C4    C10 C 0 1 Y N N N N N -37.301 -12.774 15.600 -3.692 -0.317 -0.318 C4    WFL 19 
WFL C5    C11 C 0 1 Y N N N N N -36.858 -13.612 14.587 -4.017 -1.568 0.233  C5    WFL 20 
WFL N7    N3  N 0 1 Y N N N N N -37.576 -14.754 14.607 -2.904 -2.033 0.850  N7    WFL 21 
WFL C8    C12 C 0 1 Y N N N N N -38.479 -14.623 15.622 -1.939 -1.171 0.712  C8    WFL 22 
WFL N3    N4  N 0 1 Y N N N N N -36.663 -11.566 15.757 -4.624 0.357  -0.984 N3    WFL 23 
WFL C2    C13 C 0 1 Y N N N N N -35.643 -11.188 14.945 -5.835 -0.136 -1.128 C2    WFL 24 
WFL N1    N5  N 0 1 Y N N N N N -35.208 -11.972 13.942 -6.187 -1.307 -0.628 N1    WFL 25 
WFL C6    C14 C 0 1 Y N N N N N -35.821 -13.195 13.775 -5.325 -2.051 0.056  C6    WFL 26 
WFL N6    N6  N 0 1 N N N N N N -35.466 -14.154 12.764 -5.703 -3.276 0.576  N6    WFL 27 
WFL H1    H1  H 0 1 N N N N N N -38.970 -13.144 24.677 4.626  -0.199 -2.095 H1    WFL 28 
WFL H2    H2  H 0 1 N N N N N N -37.369 -13.174 21.167 3.974  -0.194 1.698  H2    WFL 29 
WFL H3    H3  H 0 1 N N N N N N -37.036 -15.048 23.290 2.769  -1.765 0.697  H3    WFL 30 
WFL H4    H4  H 0 1 N N N N N N -36.397 -15.437 21.657 3.569  -1.428 -0.857 H4    WFL 31 
WFL H5    H5  H 0 1 N N N N N N -35.092 -14.060 23.570 5.586  -2.643 -0.082 H5    WFL 32 
WFL H6    H6  H 0 1 N N N N N N -35.957 -11.920 21.654 2.997  -4.219 0.282  H6    WFL 33 
WFL H7    H7  H 0 1 N N N N N N -34.716 -10.291 22.939 5.815  -5.096 -0.497 H7    WFL 34 
WFL H8    H8  H 0 1 N N N N N N -34.017 -11.594 23.959 5.015  -5.433 1.057  H8    WFL 35 
WFL H9    H9  H 0 1 N N N N N N -33.616 -11.510 22.211 4.378  -6.146 -0.445 H9    WFL 36 
WFL H10   H10 H 0 1 N N N N N N -37.692 -11.799 20.676 1.823  1.289  1.334  H10   WFL 37 
WFL H11   H11 H 0 1 N N N N N N -38.640 -10.273 20.655 2.294  2.875  0.679  H11   WFL 38 
WFL H12   H12 H 0 1 N N N N N N -40.074 -11.011 19.052 0.534  2.567  -1.126 H12   WFL 39 
WFL H13   H13 H 0 1 N N N N N N -39.972 -13.668 20.369 -0.046 2.792  1.832  H13   WFL 40 
WFL H14   H14 H 0 1 N N N N N N -41.861 -12.292 20.289 -1.021 4.801  0.986  H14   WFL 41 
WFL H15   H15 H 0 1 N N N N N N -39.240 -14.742 18.519 -2.125 1.802  1.633  H15   WFL 42 
WFL H16   H16 H 0 1 N N N N N N -41.526 -15.052 18.212 -2.896 3.919  0.779  H16   WFL 43 
WFL H17   H17 H 0 1 N N N N N N -39.907 -12.264 16.922 -1.850 1.432  -1.356 H17   WFL 44 
WFL H18   H18 H 0 1 N N N N N N -39.223 -15.359 15.890 -0.941 -1.290 1.106  H18   WFL 45 
WFL H19   H19 H 0 1 N N N N N N -35.168 -10.232 15.109 -6.569 0.437  -1.675 H19   WFL 46 
WFL H20   H20 H 0 1 N N N N N N -34.714 -13.794 12.212 -6.607 -3.602 0.442  H20   WFL 47 
WFL H21   H21 H 0 1 N N N N N N -35.180 -15.007 13.200 -5.064 -3.810 1.074  H21   WFL 48 
WFL H22   H22 H 0 1 N N N N N N -34.766 -13.981 21.805 4.786  -2.980 1.472  H22   WFL 49 
WFL H23   H23 H 0 1 N N N N N N -36.359 -12.003 23.402 3.797  -3.881 -1.272 H23   WFL 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WFL N6    C6    SING N N 1  
WFL C6    N1    DOUB Y N 2  
WFL C6    C5    SING Y N 3  
WFL N1    C2    SING Y N 4  
WFL C5    N7    SING Y N 5  
WFL C5    C4    DOUB Y N 6  
WFL N7    C8    DOUB Y N 7  
WFL C2    N3    DOUB Y N 8  
WFL C4    N3    SING Y N 9  
WFL C4    N9    SING Y N 10 
WFL C8    N9    SING Y N 11 
WFL N9    "C1'" SING N N 12 
WFL "C1'" "C2'" SING N N 13 
WFL "C1'" "O4'" SING N N 14 
WFL "O2'" "C2'" SING N N 15 
WFL "C2'" "C3'" SING N N 16 
WFL "O4'" "C4'" SING N N 17 
WFL "C4'" "C3'" SING N N 18 
WFL "C4'" "C5'" SING N N 19 
WFL "C3'" "O3'" SING N N 20 
WFL "C5'" "O5'" SING N N 21 
WFL N     CA    SING N N 22 
WFL N     P     SING N N 23 
WFL "O5'" P     SING N N 24 
WFL CA    CB    SING N N 25 
WFL CB    CC    SING N N 26 
WFL P     O2P   DOUB N N 27 
WFL P     O1P   SING N N 28 
WFL CC    CD    SING N N 29 
WFL O1P   H1    SING N N 30 
WFL N     H2    SING N N 31 
WFL CA    H3    SING N N 32 
WFL CA    H4    SING N N 33 
WFL CB    H5    SING N N 34 
WFL CC    H6    SING N N 35 
WFL CD    H7    SING N N 36 
WFL CD    H8    SING N N 37 
WFL CD    H9    SING N N 38 
WFL "C5'" H10   SING N N 39 
WFL "C5'" H11   SING N N 40 
WFL "C4'" H12   SING N N 41 
WFL "C3'" H13   SING N N 42 
WFL "O3'" H14   SING N N 43 
WFL "C2'" H15   SING N N 44 
WFL "O2'" H16   SING N N 45 
WFL "C1'" H17   SING N N 46 
WFL C8    H18   SING N N 47 
WFL C2    H19   SING N N 48 
WFL N6    H20   SING N N 49 
WFL N6    H21   SING N N 50 
WFL CB    H22   SING N N 51 
WFL CC    H23   SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WFL SMILES           ACDLabs              12.01 "CCCCNP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                         
WFL InChI            InChI                1.06  "InChI=1S/C14H23N6O6P/c1-2-3-4-19-27(23,24)25-5-8-10(21)11(22)14(26-8)20-7-18-9-12(15)16-6-17-13(9)20/h6-8,10-11,14,21-22H,2-5H2,1H3,(H2,15,16,17)(H2,19,23,24)/t8-,10-,11-,14-/m1/s1" 
WFL InChIKey         InChI                1.06  JCDWYZKYCCUIPS-IDTAVKCVSA-N                                                                                                                                                            
WFL SMILES_CANONICAL CACTVS               3.385 "CCCCN[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                      
WFL SMILES           CACTVS               3.385 "CCCCN[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                           
WFL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCNP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                                                       
WFL SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCNP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WFL "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-(butylamino)(hydroxy)phosphoryl]adenosine"                                                                  
WFL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-butyl-phosphonamidic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WFL "Create component" 2023-10-02 RCSB 
WFL "Initial release"  2024-10-16 RCSB 
# 
