data_XZL
# 
_chem_comp.id                                    XZL 
_chem_comp.name                                  "7-[(1~{S})-1-[4-(aminomethyl)phenoxy]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H25 F N2 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        496.551 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XZL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PAN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XZL C01  C1  C 0 1 N N N N N N -22.251 -11.733 15.311 4.045  -0.687 -2.317 C01  XZL 1  
XZL C02  C2  C 0 1 N N S N N N -23.464 -12.225 14.467 3.833  -0.669 -0.802 C02  XZL 2  
XZL C04  C3  C 0 1 Y N N N N N -25.628 -13.000 15.112 6.037  -0.668 0.090  C04  XZL 3  
XZL C05  C4  C 0 1 Y N N N N N -26.305 -12.180 14.213 6.161  0.638  -0.362 C05  XZL 4  
XZL C06  C5  C 0 1 Y N N N N N -27.672 -12.323 14.049 7.316  1.351  -0.102 C06  XZL 5  
XZL C07  C6  C 0 1 Y N N N N N -28.361 -13.272 14.776 8.347  0.764  0.609  C07  XZL 6  
XZL C08  C7  C 0 1 N N N N N N -29.875 -13.413 14.583 9.605  1.544  0.891  C08  XZL 7  
XZL C10  C8  C 0 1 Y N N N N N -27.699 -14.088 15.672 8.225  -0.537 1.061  C10  XZL 8  
XZL C11  C9  C 0 1 Y N N N N N -26.333 -13.948 15.834 7.071  -1.252 0.808  C11  XZL 9  
XZL C12  C10 C 0 1 Y N N N N N -22.877 -12.977 13.258 2.524  -1.339 -0.470 C12  XZL 10 
XZL C13  C11 C 0 1 Y N N N N N -22.636 -12.266 12.061 1.337  -0.611 -0.515 C13  XZL 11 
XZL C15  C12 C 0 1 Y N N N N N -22.493 -10.718 10.517 -0.301 0.931  -0.714 C15  XZL 12 
XZL C16  C13 C 0 1 N N N N N N -22.693 -9.378  9.889  -0.968 2.212  -0.962 C16  XZL 13 
XZL C19  C14 C 0 1 Y N N N N N -22.005 -11.880 9.938  -0.930 -0.243 -0.340 C19  XZL 14 
XZL C20  C15 C 0 1 Y N N N N N -21.420 -12.047 8.546  -2.379 -0.440 -0.119 C20  XZL 15 
XZL C21  C16 C 0 1 Y N N N N N -20.456 -11.125 8.134  -3.274 -0.312 -1.182 C21  XZL 16 
XZL C22  C17 C 0 1 Y N N N N N -19.847 -11.225 6.889  -4.626 -0.498 -0.969 C22  XZL 17 
XZL C24  C18 C 0 1 Y N N N N N -20.196 -12.271 6.044  -5.093 -0.811 0.298  C24  XZL 18 
XZL C25  C19 C 0 1 N N N N N N -19.551 -12.430 4.669  -6.570 -1.006 0.526  C25  XZL 19 
XZL C27  C20 C 0 1 N N N N N N -20.754 -9.888  3.854  -9.069 0.117  1.184  C27  XZL 20 
XZL C30  C21 C 0 1 Y N N N N N -21.136 -13.191 6.481  -4.210 -0.938 1.354  C30  XZL 21 
XZL C31  C22 C 0 1 Y N N N N N -21.741 -13.093 7.720  -2.857 -0.761 1.153  C31  XZL 22 
XZL C32  C23 C 0 1 Y N N N N N -22.079 -12.869 10.942 0.125  -1.255 -0.207 C32  XZL 23 
XZL C33  C24 C 0 1 Y N N N N N -21.720 -14.236 10.999 0.123  -2.609 0.138  C33  XZL 24 
XZL C34  C25 C 0 1 Y N N N N N -21.960 -14.938 12.174 1.299  -3.302 0.175  C34  XZL 25 
XZL C35  C26 C 0 1 Y N N N N N -22.517 -14.320 13.309 2.498  -2.672 -0.127 C35  XZL 26 
XZL F23  F1  F 0 1 N N N N N N -18.922 -10.276 6.535  -5.494 -0.374 -1.997 F23  XZL 27 
XZL N09  N1  N 0 1 N N N N N N -30.528 -13.863 15.794 9.461  2.260  2.165  N09  XZL 28 
XZL N14  N2  N 0 1 Y N N N N N -22.861 -10.971 11.762 1.056  0.701  -0.816 N14  XZL 29 
XZL O03  O1  O 0 1 N N N N N N -24.239 -12.958 15.346 4.902  -1.371 -0.164 O03  XZL 30 
XZL O17  O2  O 0 1 N N N N N N -23.167 -9.390  8.707  -2.175 2.302  -0.842 O17  XZL 31 
XZL O18  O3  O 0 1 N N N N N N -22.515 -8.320  10.548 -0.243 3.291  -1.323 O18  XZL 32 
XZL O28  O4  O 0 1 N N N N N N -21.744 -12.311 3.085  -6.810 1.007  2.212  O28  XZL 33 
XZL O29  O5  O 0 1 N N N N N N -19.782 -11.583 2.067  -7.236 1.451  -0.161 O29  XZL 34 
XZL S26  S1  S 0 1 N N N N N N -20.487 -11.603 3.347  -7.331 0.582  0.960  S26  XZL 35 
XZL H013 H1  H 0 0 N N N N N N -22.615 -11.186 16.193 3.230  -0.152 -2.804 H013 XZL 36 
XZL H011 H2  H 0 0 N N N N N N -21.656 -12.599 15.637 4.992  -0.203 -2.557 H011 XZL 37 
XZL H012 H3  H 0 0 N N N N N N -21.625 -11.067 14.699 4.064  -1.718 -2.670 H012 XZL 38 
XZL H021 H4  H 0 0 N N N N N N -24.013 -11.345 14.101 3.814  0.362  -0.449 H021 XZL 39 
XZL H051 H5  H 0 0 N N N N N N -25.766 -11.436 13.646 5.357  1.096  -0.918 H051 XZL 40 
XZL H061 H6  H 0 0 N N N N N N -28.200 -11.691 13.351 7.413  2.367  -0.454 H061 XZL 41 
XZL H082 H7  H 0 0 N N N N N N -30.291 -12.436 14.296 10.451 0.860  0.952  H082 XZL 42 
XZL H081 H8  H 0 0 N N N N N N -30.066 -14.143 13.782 9.775  2.262  0.088  H081 XZL 43 
XZL H101 H9  H 0 0 N N N N N N -28.243 -14.828 16.240 9.031  -0.992 1.616  H101 XZL 44 
XZL H111 H10 H 0 0 N N N N N N -25.810 -14.585 16.532 6.975  -2.267 1.165  H111 XZL 45 
XZL H211 H11 H 0 0 N N N N N N -20.178 -10.318 8.796  -2.910 -0.068 -2.169 H211 XZL 46 
XZL H252 H12 H 0 0 N N N N N N -19.485 -13.503 4.434  -7.030 -1.393 -0.384 H252 XZL 47 
XZL H251 H13 H 0 0 N N N N N N -18.539 -12.000 4.704  -6.721 -1.716 1.339  H251 XZL 48 
XZL H272 H14 H 0 0 N N N N N N -21.284 -9.868  4.817  -9.650 0.999  1.453  H272 XZL 49 
XZL H271 H15 H 0 0 N N N N N N -19.783 -9.382  3.960  -9.456 -0.303 0.255  H271 XZL 50 
XZL H273 H16 H 0 0 N N N N N N -21.357 -9.370  3.093  -9.147 -0.626 1.978  H273 XZL 51 
XZL H301 H17 H 0 0 N N N N N N -21.405 -14.011 5.832  -4.581 -1.182 2.339  H301 XZL 52 
XZL H311 H18 H 0 0 N N N N N N -22.461 -13.834 8.035  -2.169 -0.861 1.979  H311 XZL 53 
XZL H331 H19 H 0 0 N N N N N N -21.269 -14.724 10.147 -0.807 -3.106 0.375  H331 XZL 54 
XZL H341 H20 H 0 0 N N N N N N -21.712 -15.988 12.217 1.296  -4.349 0.442  H341 XZL 55 
XZL H351 H21 H 0 0 N N N N N N -22.665 -14.886 14.217 3.420  -3.234 -0.099 H351 XZL 56 
XZL H092 H22 H 0 0 N N N N N N -31.512 -13.944 15.633 10.292 2.791  2.378  H092 XZL 57 
XZL H091 H23 H 0 0 N N N N N N -30.160 -14.754 16.060 8.645  2.854  2.157  H091 XZL 58 
XZL H141 H25 H 0 0 N N N N N N -23.250 -10.298 12.391 1.715  1.368  -1.064 H141 XZL 59 
XZL H2   H26 H 0 1 N N N N N N -22.786 -7.573  10.027 -0.770 4.089  -1.464 H2   XZL 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XZL O29 S26  DOUB N N 1  
XZL O28 S26  DOUB N N 2  
XZL S26 C27  SING N N 3  
XZL S26 C25  SING N N 4  
XZL C25 C24  SING N N 5  
XZL C24 C30  DOUB Y N 6  
XZL C24 C22  SING Y N 7  
XZL C30 C31  SING Y N 8  
XZL F23 C22  SING N N 9  
XZL C22 C21  DOUB Y N 10 
XZL C31 C20  DOUB Y N 11 
XZL C21 C20  SING Y N 12 
XZL C20 C19  SING N N 13 
XZL O17 C16  DOUB N N 14 
XZL C16 C15  SING N N 15 
XZL C16 O18  SING N N 16 
XZL C19 C15  DOUB Y N 17 
XZL C19 C32  SING Y N 18 
XZL C15 N14  SING Y N 19 
XZL C32 C33  DOUB Y N 20 
XZL C32 C13  SING Y N 21 
XZL C33 C34  SING Y N 22 
XZL N14 C13  SING Y N 23 
XZL C13 C12  DOUB Y N 24 
XZL C34 C35  DOUB Y N 25 
XZL C12 C35  SING Y N 26 
XZL C12 C02  SING N N 27 
XZL C06 C05  DOUB Y N 28 
XZL C06 C07  SING Y N 29 
XZL C05 C04  SING Y N 30 
XZL C02 C01  SING N N 31 
XZL C02 O03  SING N N 32 
XZL C08 C07  SING N N 33 
XZL C08 N09  SING N N 34 
XZL C07 C10  DOUB Y N 35 
XZL C04 O03  SING N N 36 
XZL C04 C11  DOUB Y N 37 
XZL C10 C11  SING Y N 38 
XZL C01 H013 SING N N 39 
XZL C01 H011 SING N N 40 
XZL C01 H012 SING N N 41 
XZL C02 H021 SING N N 42 
XZL C05 H051 SING N N 43 
XZL C06 H061 SING N N 44 
XZL C08 H082 SING N N 45 
XZL C08 H081 SING N N 46 
XZL C10 H101 SING N N 47 
XZL C11 H111 SING N N 48 
XZL C21 H211 SING N N 49 
XZL C25 H252 SING N N 50 
XZL C25 H251 SING N N 51 
XZL C27 H272 SING N N 52 
XZL C27 H271 SING N N 53 
XZL C27 H273 SING N N 54 
XZL C30 H301 SING N N 55 
XZL C31 H311 SING N N 56 
XZL C33 H331 SING N N 57 
XZL C34 H341 SING N N 58 
XZL C35 H351 SING N N 59 
XZL N09 H092 SING N N 60 
XZL N09 H091 SING N N 61 
XZL N14 H141 SING N N 62 
XZL O18 H2   SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XZL InChI            InChI                1.06  "InChI=1S/C26H25FN2O5S/c1-15(34-19-10-6-16(13-28)7-11-19)20-4-3-5-21-23(25(26(30)31)29-24(20)21)17-8-9-18(22(27)12-17)14-35(2,32)33/h3-12,15,29H,13-14,28H2,1-2H3,(H,30,31)/t15-/m0/s1" 
XZL InChIKey         InChI                1.06  IPGZSJQIGXYHKU-HNNXBMFYSA-N                                                                                                                                                             
XZL SMILES_CANONICAL CACTVS               3.385 "C[C@H](Oc1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                               
XZL SMILES           CACTVS               3.385 "C[CH](Oc1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(F)c4"                                                                                                                
XZL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)Oc4ccc(cc4)CN"                                                                                                                
XZL SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)Oc4ccc(cc4)CN"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           XZL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[4-(aminomethyl)phenoxy]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XZL "Create component" 2023-06-09 PDBE 
XZL "Initial release"  2024-06-26 RCSB 
# 
