data_ZBL
# 
_chem_comp.id                                    ZBL 
_chem_comp.name                                  "8-chloro-11-(1-beta-D-glucopyranuronosylpiperidin-4-ylidene)-3-hydroxy-6,11-dihydro-5H-benzo[5,6]cyclohepta[1,2-b]pyridine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H27 Cl N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-08 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        502.944 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZBL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GEO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZBL C4  C1  C  0 1 N N N N N N 60.472 57.991 -34.654 1.400  0.923  -0.645 C4  ZBL 1  
ZBL C14 C2  C  0 1 N N N N N N 63.458 58.441 -38.614 -3.025 -0.300 1.980  C14 ZBL 2  
ZBL C5  C3  C  0 1 N N N N N N 61.468 58.222 -35.778 0.062  1.415  -1.209 C5  ZBL 3  
ZBL C6  C4  C  0 1 N N N N N N 62.836 58.466 -35.206 -0.942 0.287  -1.100 C6  ZBL 4  
ZBL C11 C5  C  0 1 Y N N N N N 65.360 55.194 -38.134 -4.846 -2.754 -0.224 C11 ZBL 5  
ZBL C7  C6  C  0 1 N N N N N N 63.954 58.523 -35.944 -2.156 0.490  -0.573 C7  ZBL 6  
ZBL C8  C7  C  0 1 Y N N N N N 64.449 57.326 -36.648 -3.107 -0.642 -0.485 C8  ZBL 7  
ZBL C9  C8  C  0 1 Y N N N N N 65.157 56.303 -36.023 -3.561 -1.297 -1.626 C9  ZBL 8  
ZBL C10 C9  C  0 1 Y N N N N N 65.611 55.235 -36.775 -4.437 -2.357 -1.486 C10 ZBL 9  
ZBL C12 C10 C  0 1 Y N N N N N 64.670 56.203 -38.768 -4.391 -2.094 0.905  C12 ZBL 10 
ZBL C13 C11 C  0 1 Y N N N N N 64.180 57.263 -38.007 -3.516 -1.028 0.768  C13 ZBL 11 
ZBL N1  N1  N  0 1 N N N N N N 60.394 59.153 -33.763 1.785  -0.323 -1.319 N1  ZBL 12 
ZBL N2  N2  N  0 1 Y N N N N N 65.453 60.233 -35.175 -2.170 2.856  -0.889 N2  ZBL 13 
ZBL C3  C12 C  0 1 N N R N N N 59.288 59.045 -32.785 3.162  -0.703 -0.976 C3  ZBL 14 
ZBL C1  C13 C  0 1 N N N N N N 58.867 61.005 -35.140 4.631  -1.180 2.395  C1  ZBL 15 
ZBL C15 C14 C  0 1 N N N N N N 64.455 59.607 -38.801 -3.623 1.073  2.131  C15 ZBL 16 
ZBL C16 C15 C  0 1 Y N N N N N 65.103 60.180 -37.557 -3.190 2.075  1.093  C16 ZBL 17 
ZBL C17 C16 C  0 1 Y N N N N N 65.974 61.259 -37.687 -3.522 3.399  1.402  C17 ZBL 18 
ZBL C18 C17 C  0 1 Y N N N N N 66.568 61.806 -36.565 -3.158 4.421  0.540  C18 ZBL 19 
ZBL C19 C18 C  0 1 Y N N N N N 66.287 61.265 -35.325 -2.461 4.106  -0.619 C19 ZBL 20 
ZBL C2  C19 C  0 1 N N S N N N 58.101 60.854 -33.832 4.606  -1.137 0.889  C2  ZBL 21 
ZBL C20 C20 C  0 1 Y N N N N N 64.857 59.683 -36.258 -2.520 1.840  -0.090 C20 ZBL 22 
ZBL C21 C21 C  0 1 N N N N N N 62.812 58.570 -33.709 -0.527 -1.079 -1.606 C21 ZBL 23 
ZBL C22 C22 C  0 1 N N N N N N 61.719 59.518 -33.237 0.848  -1.412 -1.016 C22 ZBL 24 
ZBL C23 C23 C  0 1 N N R N N N 59.477 59.748 -31.441 4.135  0.331  -1.551 C23 ZBL 25 
ZBL C24 C24 C  0 1 N N S N N N 58.665 61.031 -31.400 5.563  -0.040 -1.138 C24 ZBL 26 
ZBL C25 C25 C  0 1 N N S N N N 58.731 61.738 -32.746 5.636  -0.121 0.389  C25 ZBL 27 
ZBL O1  O1  O  0 1 N N N N N N 59.801 61.770 -35.202 5.727  -1.618 3.035  O1  ZBL 28 
ZBL O2  O2  O  0 1 N N N N N N 58.542 60.355 -36.102 3.665  -0.821 3.026  O2  ZBL 29 
ZBL O3  O3  O  0 1 N N N N N N 58.073 59.485 -33.406 3.304  -0.751 0.445  O3  ZBL 30 
ZBL O4  O4  O  0 1 N N N N N N 67.416 62.864 -36.708 -3.478 5.711  0.824  O4  ZBL 31 
ZBL O5  O5  O  0 1 N N N N N N 59.049 58.892 -30.381 4.036  0.339  -2.976 O5  ZBL 32 
ZBL O6  O6  O  0 1 N N N N N N 59.126 61.878 -30.347 6.470  0.960  -1.608 O6  ZBL 33 
ZBL O7  O7  O  0 1 N N N N N N 58.055 62.998 -32.700 6.946  -0.537 0.783  O7  ZBL 34 
ZBL CL1 CL1 CL 0 0 N N N N N N 65.953 53.823 -39.029 -5.942 -4.090 -0.056 CL1 ZBL 35 
ZBL H1  H1  H  0 1 N N N N N N 59.479 57.805 -35.088 2.166  1.680  -0.814 H1  ZBL 36 
ZBL H2  H2  H  0 1 N N N N N N 60.787 57.113 -34.071 1.298  0.742  0.425  H2  ZBL 37 
ZBL H3  H3  H  0 1 N N N N N N 62.643 58.757 -37.946 -3.270 -0.888 2.865  H3  ZBL 38 
ZBL H11 H4  H  0 1 N N N N N N 63.041 58.153 -39.590 -1.941 -0.202 1.915  H11 ZBL 39 
ZBL H4  H5  H  0 1 N N N N N N 61.157 59.098 -36.367 -0.286 2.274  -0.635 H4  ZBL 40 
ZBL H5  H6  H  0 1 N N N N N N 61.497 57.335 -36.428 0.185  1.697  -2.255 H5  ZBL 41 
ZBL H8  H9  H  0 1 N N N N N N 65.350 56.343 -34.961 -3.234 -0.981 -2.606 H8  ZBL 42 
ZBL H9  H10 H  0 1 N N N N N N 66.160 54.435 -36.302 -4.802 -2.876 -2.361 H9  ZBL 43 
ZBL H10 H11 H  0 1 N N N N N N 64.511 56.174 -39.836 -4.714 -2.409 1.886  H10 ZBL 44 
ZBL H14 H13 H  0 1 N N N N N N 59.170 57.975 -32.557 3.384  -1.684 -1.397 H14 ZBL 45 
ZBL H15 H14 H  0 1 N N N N N N 65.262 59.249 -39.457 -4.709 0.981  2.088  H15 ZBL 46 
ZBL H12 H15 H  0 1 N N N N N N 63.915 60.426 -39.298 -3.354 1.459  3.114  H12 ZBL 47 
ZBL H16 H16 H  0 1 N N N N N N 66.185 61.668 -38.664 -4.061 3.624  2.311  H16 ZBL 48 
ZBL H17 H17 H  0 1 N N N N N N 66.756 61.690 -34.450 -2.159 4.890  -1.298 H17 ZBL 49 
ZBL H18 H18 H  0 1 N N N N N N 57.071 61.203 -33.997 4.846  -2.124 0.493  H18 ZBL 50 
ZBL H19 H19 H  0 1 N N N N N N 62.629 57.572 -33.284 -1.255 -1.826 -1.287 H19 ZBL 51 
ZBL H20 H20 H  0 1 N N N N N N 63.786 58.944 -33.360 -0.467 -1.065 -2.694 H20 ZBL 52 
ZBL H21 H21 H  0 1 N N N N N N 61.965 60.536 -33.574 1.216  -2.340 -1.454 H21 ZBL 53 
ZBL H22 H22 H  0 1 N N N N N N 61.681 59.495 -32.138 0.762  -1.528 0.064  H22 ZBL 54 
ZBL H23 H23 H  0 1 N N N N N N 60.542 59.997 -31.319 3.888  1.319  -1.162 H23 ZBL 55 
ZBL H24 H24 H  0 1 N N N N N N 57.615 60.761 -31.211 5.828  -1.005 -1.570 H24 ZBL 56 
ZBL H25 H25 H  0 1 N N N N N N 59.789 61.896 -33.003 5.420  0.857  0.818  H25 ZBL 57 
ZBL H26 H26 H  0 1 N N N N N N 60.174 61.745 -36.075 5.695  -1.627 4.002  H26 ZBL 58 
ZBL H27 H27 H  0 1 N N N N N N 67.742 63.127 -35.855 -2.806 6.178  1.340  H27 ZBL 59 
ZBL H28 H28 H  0 1 N N N N N N 59.169 59.334 -29.549 4.626  0.972  -3.408 H28 ZBL 60 
ZBL H29 H29 H  0 1 N N N N N N 59.074 61.413 -29.520 7.394  0.789  -1.382 H29 ZBL 61 
ZBL H30 H30 H  0 1 N N N N N N 58.446 63.543 -32.028 7.063  -0.615 1.740  H30 ZBL 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZBL CL1 C11 SING N N 1  
ZBL C15 C14 SING N N 2  
ZBL C15 C16 SING N N 3  
ZBL C12 C11 DOUB Y N 4  
ZBL C12 C13 SING Y N 5  
ZBL C14 C13 SING N N 6  
ZBL C11 C10 SING Y N 7  
ZBL C13 C8  DOUB Y N 8  
ZBL C17 C16 DOUB Y N 9  
ZBL C17 C18 SING Y N 10 
ZBL C16 C20 SING Y N 11 
ZBL C10 C9  DOUB Y N 12 
ZBL O4  C18 SING N N 13 
ZBL C8  C9  SING Y N 14 
ZBL C8  C7  SING N N 15 
ZBL C18 C19 DOUB Y N 16 
ZBL C20 C7  SING N N 17 
ZBL C20 N2  DOUB Y N 18 
ZBL O2  C1  DOUB N N 19 
ZBL C7  C6  DOUB N N 20 
ZBL C5  C6  SING N N 21 
ZBL C5  C4  SING N N 22 
ZBL C19 N2  SING Y N 23 
ZBL C6  C21 SING N N 24 
ZBL O1  C1  SING N N 25 
ZBL C1  C2  SING N N 26 
ZBL C4  N1  SING N N 27 
ZBL C2  O3  SING N N 28 
ZBL C2  C25 SING N N 29 
ZBL N1  C22 SING N N 30 
ZBL N1  C3  SING N N 31 
ZBL C21 C22 SING N N 32 
ZBL O3  C3  SING N N 33 
ZBL C3  C23 SING N N 34 
ZBL C25 O7  SING N N 35 
ZBL C25 C24 SING N N 36 
ZBL C23 C24 SING N N 37 
ZBL C23 O5  SING N N 38 
ZBL C24 O6  SING N N 39 
ZBL C4  H1  SING N N 40 
ZBL C4  H2  SING N N 41 
ZBL C14 H3  SING N N 42 
ZBL C14 H11 SING N N 43 
ZBL C5  H4  SING N N 44 
ZBL C5  H5  SING N N 45 
ZBL C9  H8  SING N N 46 
ZBL C10 H9  SING N N 47 
ZBL C12 H10 SING N N 48 
ZBL C3  H14 SING N N 49 
ZBL C15 H15 SING N N 50 
ZBL C15 H12 SING N N 51 
ZBL C17 H16 SING N N 52 
ZBL C19 H17 SING N N 53 
ZBL C2  H18 SING N N 54 
ZBL C21 H19 SING N N 55 
ZBL C21 H20 SING N N 56 
ZBL C22 H21 SING N N 57 
ZBL C22 H22 SING N N 58 
ZBL C23 H23 SING N N 59 
ZBL C24 H24 SING N N 60 
ZBL C25 H25 SING N N 61 
ZBL O1  H26 SING N N 62 
ZBL O4  H27 SING N N 63 
ZBL O5  H28 SING N N 64 
ZBL O6  H29 SING N N 65 
ZBL O7  H30 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZBL SMILES           ACDLabs              12.01 "Clc1cc2CCc3cc(O)cnc3C(\c2cc1)=C1/CCN(CC1)C1OC(C(O)C(O)C1O)C(=O)O"                                                                                                                                            
ZBL InChI            InChI                1.06  "InChI=1S/C25H27ClN2O7/c26-15-3-4-17-13(9-15)1-2-14-10-16(29)11-27-19(14)18(17)12-5-7-28(8-6-12)24-22(32)20(30)21(31)23(35-24)25(33)34/h3-4,9-11,20-24,29-32H,1-2,5-8H2,(H,33,34)/t20-,21-,22+,23-,24+/m0/s1" 
ZBL InChIKey         InChI                1.06  ABXRQJRQHLGUBH-OSFFKXSWSA-N                                                                                                                                                                                   
ZBL SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](O)[C@@H](O[C@@H]([C@H]1O)C(O)=O)N2CC\C(CC2)=C3/c4ccc(Cl)cc4CCc5cc(O)cnc35"                                                                                                                    
ZBL SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)N2CCC(CC2)=C3c4ccc(Cl)cc4CCc5cc(O)cnc35"                                                                                                                               
ZBL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CCc3cc(cnc3C2=C4CCN(CC4)[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)C(=O)O)O)O)O)O"                                                                                                                      
ZBL SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CCc3cc(cnc3C2=C4CCN(CC4)C5C(C(C(C(O5)C(=O)O)O)O)O)O"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZBL "SYSTEMATIC NAME" ACDLabs              12.01 "8-chloro-11-(1-beta-D-glucopyranuronosylpiperidin-4-ylidene)-3-hydroxy-6,11-dihydro-5H-benzo[5,6]cyclohepta[1,2-b]pyridine"                                                                         
ZBL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S},5~{R},6~{R})-6-[4-(13-chloranyl-6-oxidanyl-4-azatricyclo[9.4.0.0^{3,8}]pentadeca-1(11),3,5,7,12,14-hexaen-2-ylidene)piperidin-1-yl]-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZBL "Create component" 2023-03-08 RCSB 
ZBL "Initial release"  2024-03-20 RCSB 
# 
