data_31M
# 
_chem_comp.id                                    31M 
_chem_comp.name                                  
;3'-deoxy-3'-[(L-methionyl-L-phenylalanyl)amino]adenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C24 H33 N8 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-05-20 
_chem_comp.pdbx_modified_date                    2014-08-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        624.606 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     31M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4QCQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
31M P      P      P 0 1 N N N 90.308 -48.533 0.216   -4.892 -4.361 1.396  P      31M 1  
31M OP1    OP1    O 0 1 N N N 90.073 -47.099 -0.065  -3.891 -5.292 1.964  OP1    31M 2  
31M OP2    OP2    O 0 1 N N N 91.672 -49.097 0.099   -5.740 -3.691 2.590  OP2    31M 3  
31M "C1'"  "C1'"  C 0 1 N N R 85.475 -48.625 1.027   -3.015 0.799  -0.550 "C1'"  31M 4  
31M "C2'"  "C2'"  C 0 1 N N R 84.638 -48.914 -0.210  -1.892 0.882  0.514  "C2'"  31M 5  
31M "O2'"  "O2'"  O 0 1 N N N 83.856 -50.102 -0.007  -0.827 1.723  0.067  "O2'"  31M 6  
31M "C3'"  "C3'"  C 0 1 N N S 85.656 -49.151 -1.300  -1.428 -0.591 0.612  "C3'"  31M 7  
31M "N3'"  "N3'"  N 0 1 N N N 85.291 -50.255 -2.202  -0.233 -0.812 -0.207 "N3'"  31M 8  
31M "C4'"  "C4'"  C 0 1 N N S 86.902 -49.624 -0.572  -2.617 -1.400 0.059  "C4'"  31M 9  
31M "O4'"  "O4'"  O 0 1 N N N 86.733 -49.327 0.845   -3.659 -0.462 -0.267 "O4'"  31M 10 
31M "C5'"  "C5'"  C 0 1 N N N 88.099 -48.854 -1.122  -3.115 -2.384 1.119  "C5'"  31M 11 
31M "O5'"  "O5'"  O 0 1 N N N 89.307 -49.428 -0.657  -4.140 -3.209 0.560  "O5'"  31M 12 
31M N9     N9     N 0 1 Y N N 85.754 -47.161 1.190   -3.960 1.907  -0.392 N9     31M 13 
31M C8     C8     C 0 1 Y N N 86.669 -46.445 0.557   -5.108 1.890  0.342  C8     31M 14 
31M N7     N7     N 0 1 Y N N 86.613 -45.195 0.992   -5.704 3.044  0.262  N7     31M 15 
31M C6     C6     C 0 1 Y N N 85.232 -44.094 2.670   -5.123 5.201  -0.961 C6     31M 16 
31M N6     N6     N 0 1 N N N 85.773 -42.891 2.515   -6.214 5.959  -0.572 N6     31M 17 
31M C5     C5     C 0 1 Y N N 85.672 -45.104 1.930   -4.978 3.873  -0.526 C5     31M 18 
31M C4     C4     C 0 1 Y N N 85.137 -46.306 2.074   -3.847 3.155  -0.950 C4     31M 19 
31M N3     N3     N 0 1 Y N N 84.150 -46.524 2.957   -2.961 3.754  -1.739 N3     31M 20 
31M C2     C2     C 0 1 Y N N 83.716 -45.526 3.689   -3.136 5.003  -2.118 C2     31M 21 
31M N1     N1     N 0 1 Y N N 84.267 -44.271 3.543   -4.181 5.718  -1.742 N1     31M 22 
31M C      C      C 0 1 N N N 86.007 -50.524 -3.313  0.992  -0.643 0.329  C      31M 23 
31M O      O      O 0 1 N N N 86.916 -49.818 -3.752  1.105  -0.308 1.489  O      31M 24 
31M CA     CA     C 0 1 N N S 85.639 -51.824 -4.016  2.220  -0.869 -0.514 CA     31M 25 
31M N      N      N 0 1 N N N 85.505 -51.650 -5.485  3.418  -0.623 0.293  N      31M 26 
31M CB     CB     C 0 1 N N N 86.731 -52.836 -3.664  2.234  -2.313 -1.019 CB     31M 27 
31M CG     CG     C 0 1 Y N N 86.487 -54.052 -4.286  3.395  -2.506 -1.960 CG     31M 28 
31M CD1    CD1    C 0 1 Y N N 87.293 -54.467 -5.341  3.234  -2.273 -3.313 CD1    31M 29 
31M CE1    CE1    C 0 1 Y N N 87.053 -55.688 -5.960  4.300  -2.445 -4.175 CE1    31M 30 
31M CZ     CZ     C 0 1 Y N N 86.003 -56.493 -5.527  5.528  -2.849 -3.685 CZ     31M 31 
31M CE2    CE2    C 0 1 Y N N 85.198 -56.078 -4.473  5.689  -3.081 -2.332 CE2    31M 32 
31M CD2    CD2    C 0 1 Y N N 85.440 -54.858 -3.851  4.623  -2.910 -1.469 CD2    31M 33 
31M CTM    CTM    C 0 1 N N N 84.354 -51.296 -6.060  4.572  -0.266 -0.306 CTM    31M 34 
31M OTM    OTM    O 0 1 N N N 83.367 -50.833 -5.480  4.619  -0.150 -1.512 OTM    31M 35 
31M CAM    CAM    C 0 1 N N S 84.174 -51.411 -7.583  5.804  -0.013 0.524  CAM    31M 36 
31M NM     NM     N 0 1 N N N 84.137 -52.818 -8.010  6.998  -0.116 -0.326 NM     31M 37 
31M CBM    CBM    C 0 1 N N N 82.900 -50.686 -8.016  5.731  1.390  1.131  CBM    31M 38 
31M CGM    CGM    C 0 1 N N N 83.201 -49.204 -8.240  6.918  1.601  2.072  CGM    31M 39 
31M SDM    SDM    S 0 1 N N N 81.687 -48.231 -8.560  6.831  3.264  2.792  SDM    31M 40 
31M CEM    CEM    C 0 1 N N N 80.894 -49.280 -9.760  8.297  3.324  3.859  CEM    31M 41 
31M HOP2   HOP2   H 0 0 N N N 92.277 -48.413 -0.163  -6.416 -3.068 2.291  HOP2   31M 42 
31M "H1'"  "H1'"  H 0 1 N N N 84.952 -49.003 1.918   -2.592 0.797  -1.555 "H1'"  31M 43 
31M "H2'"  "H2'"  H 0 1 N N N 84.005 -48.048 -0.455  -2.286 1.231  1.469  "H2'"  31M 44 
31M "HO2'" "HO2'" H 0 0 N N N 83.217 -49.948 0.679   -1.091 2.639  -0.096 "HO2'" 31M 45 
31M "H3'"  "H3'"  H 0 1 N N N 85.857 -48.224 -1.858  -1.234 -0.860 1.651  "H3'"  31M 46 
31M H3     H3     H 0 1 N N N 84.494 -50.819 -1.986  -0.324 -1.079 -1.135 H3     31M 47 
31M "H4'"  "H4'"  H 0 1 N N N 87.045 -50.703 -0.732  -2.314 -1.940 -0.837 "H4'"  31M 48 
31M H5`    H5`    H 0 1 N N N 88.042 -47.807 -0.788  -2.287 -3.010 1.452  H5`    31M 49 
31M "H5''" "H5''" H 0 0 N N N 88.080 -48.890 -2.221  -3.516 -1.832 1.969  "H5''" 31M 50 
31M H8     H8     H 0 1 N N N 87.351 -46.819 -0.193  -5.470 1.043  0.907  H8     31M 51 
31M H61    H61    H 0 1 N N N 85.331 -42.244 3.136   -6.298 6.878  -0.870 H61    31M 52 
31M H62    H62    H 0 1 N N N 86.750 -42.936 2.721   -6.896 5.570  -0.001 H62    31M 53 
31M H2     H2     H 0 1 N N N 82.926 -45.688 4.407   -2.397 5.460  -2.759 H2     31M 54 
31M HA     HA     H 0 1 N N N 84.683 -52.185 -3.608  2.209  -0.187 -1.364 HA     31M 55 
31M H      H      H 0 1 N N N 86.306 -51.804 -6.064  3.381  -0.716 1.258  H      31M 56 
31M HB2    HB2    H 0 1 N N N 86.749 -52.984 -2.574  2.335  -2.993 -0.172 HB2    31M 57 
31M HB3    HB3    H 0 1 N N N 87.705 -52.448 -3.997  1.302  -2.523 -1.544 HB3    31M 58 
31M HD1    HD1    H 0 1 N N N 88.105 -53.840 -5.679  2.275  -1.957 -3.696 HD1    31M 59 
31M HE1    HE1    H 0 1 N N N 87.681 -56.012 -6.777  4.175  -2.263 -5.233 HE1    31M 60 
31M HZ     HZ     H 0 1 N N N 85.814 -57.440 -6.010  6.361  -2.984 -4.359 HZ     31M 61 
31M HE2    HE2    H 0 1 N N N 84.384 -56.703 -4.137  6.648  -3.397 -1.948 HE2    31M 62 
31M HD2    HD2    H 0 1 N N N 84.815 -54.536 -3.031  4.749  -3.088 -0.411 HD2    31M 63 
31M HAM    HAM    H 0 1 N N N 85.030 -50.916 -8.065  5.863  -0.752 1.324  HAM    31M 64 
31M HNM2   HNM2   H 0 0 N N N 84.976 -53.277 -7.719  7.104  -1.053 -0.688 HNM2   31M 65 
31M HNM1   HNM1   H 0 0 N N N 83.348 -53.272 -7.595  6.967  0.559  -1.075 HNM1   31M 66 
31M HBM2   HBM2   H 0 0 N N N 82.136 -50.789 -7.231  5.762  2.132  0.334  HBM2   31M 67 
31M HBM3   HBM3   H 0 0 N N N 82.527 -51.129 -8.951  4.801  1.495  1.690  HBM3   31M 68 
31M HGM3   HGM3   H 0 0 N N N 83.874 -49.106 -9.105  6.887  0.858  2.869  HGM3   31M 69 
31M HGM2   HGM2   H 0 0 N N N 83.696 -48.804 -7.343  7.848  1.495  1.514  HGM2   31M 70 
31M HEM1   HEM1   H 0 0 N N N 79.940 -48.828 -10.069 8.348  4.295  4.352  HEM1   31M 71 
31M HEM2   HEM2   H 0 0 N N N 81.548 -49.392 -10.638 8.231  2.538  4.612  HEM2   31M 72 
31M HEM3   HEM3   H 0 0 N N N 80.705 -50.268 -9.315  9.192  3.175  3.256  HEM3   31M 73 
31M OP3    OP3    O 0 1 N Y N ?      ?       ?       -5.886 -5.169 0.421  OP3    31M 74 
31M HOP3   HOP3   H 0 0 N N N ?      ?       ?       -6.373 -5.881 0.859  HOP3   31M 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
31M CEM   SDM    SING N N 1  
31M SDM   CGM    SING N N 2  
31M CGM   CBM    SING N N 3  
31M CBM   CAM    SING N N 4  
31M NM    CAM    SING N N 5  
31M CAM   CTM    SING N N 6  
31M CTM   N      SING N N 7  
31M CTM   OTM    DOUB N N 8  
31M CE1   CZ     DOUB Y N 9  
31M CE1   CD1    SING Y N 10 
31M CZ    CE2    SING Y N 11 
31M N     CA     SING N N 12 
31M CD1   CG     DOUB Y N 13 
31M CE2   CD2    DOUB Y N 14 
31M CG    CD2    SING Y N 15 
31M CG    CB     SING N N 16 
31M CA    CB     SING N N 17 
31M CA    C      SING N N 18 
31M O     C      DOUB N N 19 
31M C     "N3'"  SING N N 20 
31M "N3'" "C3'"  SING N N 21 
31M "C3'" "C4'"  SING N N 22 
31M "C3'" "C2'"  SING N N 23 
31M "C5'" "O5'"  SING N N 24 
31M "C5'" "C4'"  SING N N 25 
31M "O5'" P      SING N N 26 
31M "C4'" "O4'"  SING N N 27 
31M "C2'" "O2'"  SING N N 28 
31M "C2'" "C1'"  SING N N 29 
31M OP1   P      DOUB N N 30 
31M OP2   P      SING N N 31 
31M C8    N7     DOUB Y N 32 
31M C8    N9     SING Y N 33 
31M "O4'" "C1'"  SING N N 34 
31M N7    C5     SING Y N 35 
31M "C1'" N9     SING N N 36 
31M N9    C4     SING Y N 37 
31M C5    C4     DOUB Y N 38 
31M C5    C6     SING Y N 39 
31M C4    N3     SING Y N 40 
31M N6    C6     SING N N 41 
31M C6    N1     DOUB Y N 42 
31M N3    C2     DOUB Y N 43 
31M N1    C2     SING Y N 44 
31M OP2   HOP2   SING N N 45 
31M "C1'" "H1'"  SING N N 46 
31M "C2'" "H2'"  SING N N 47 
31M "O2'" "HO2'" SING N N 48 
31M "C3'" "H3'"  SING N N 49 
31M "N3'" H3     SING N N 50 
31M "C4'" "H4'"  SING N N 51 
31M "C5'" H5`    SING N N 52 
31M "C5'" "H5''" SING N N 53 
31M C8    H8     SING N N 54 
31M N6    H61    SING N N 55 
31M N6    H62    SING N N 56 
31M C2    H2     SING N N 57 
31M CA    HA     SING N N 58 
31M N     H      SING N N 59 
31M CB    HB2    SING N N 60 
31M CB    HB3    SING N N 61 
31M CD1   HD1    SING N N 62 
31M CE1   HE1    SING N N 63 
31M CZ    HZ     SING N N 64 
31M CE2   HE2    SING N N 65 
31M CD2   HD2    SING N N 66 
31M CAM   HAM    SING N N 67 
31M NM    HNM2   SING N N 68 
31M NM    HNM1   SING N N 69 
31M CBM   HBM2   SING N N 70 
31M CBM   HBM3   SING N N 71 
31M CGM   HGM3   SING N N 72 
31M CGM   HGM2   SING N N 73 
31M CEM   HEM1   SING N N 74 
31M CEM   HEM2   SING N N 75 
31M CEM   HEM3   SING N N 76 
31M P     OP3    SING N N 77 
31M OP3   HOP3   SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
31M SMILES           ACDLabs              12.01 "O=P(O)(O)OCC4OC(n2cnc1c(ncnc12)N)C(O)C4NC(=O)C(NC(=O)C(N)CCSC)Cc3ccccc3" 
31M InChI            InChI                1.03  
;InChI=1S/C24H33N8O8PS/c1-42-8-7-14(25)22(34)30-15(9-13-5-3-2-4-6-13)23(35)31-17-16(10-39-41(36,37)38)40-24(19(17)33)32-12-29-18-20(26)27-11-28-21(18)32/h2-6,11-12,14-17,19,24,33H,7-10,25H2,1H3,(H,30,34)(H,31,35)(H2,26,27,28)(H2,36,37,38)/t14-,15-,16+,17+,19+,24+/m0/s1
;
31M InChIKey         InChI                1.03  DNXAWIQQLHCDHP-FWHNRVPHSA-N 
31M SMILES_CANONICAL CACTVS               3.385 "CSCC[C@H](N)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(O)=O)n3cnc4c(N)ncnc34" 
31M SMILES           CACTVS               3.385 "CSCC[CH](N)C(=O)N[CH](Cc1ccccc1)C(=O)N[CH]2[CH](O)[CH](O[CH]2CO[P](O)(O)=O)n3cnc4c(N)ncnc34" 
31M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CSCC[C@@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)COP(=O)(O)O)N" 
31M SMILES           "OpenEye OEToolkits" 1.7.6 "CSCCC(C(=O)NC(Cc1ccccc1)C(=O)NC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
31M "SYSTEMATIC NAME" ACDLabs              12.01 
;3'-deoxy-3'-[(L-methionyl-L-phenylalanyl)amino]adenosine 5'-(dihydrogen phosphate)
;
31M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-[[(2S)-2-[[(2S)-2-azanyl-4-methylsulfanyl-butanoyl]amino]-3-phenyl-propanoyl]amino]-4-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
31M "Create component" 2014-05-20 RCSB 
31M "Initial release"  2014-08-20 RCSB 
# 
