data_B6M
# 
_chem_comp.id                                    B6M 
_chem_comp.name                                  "(1R,2S,3S,4R,6R)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-alpha-L-altropyranosyl)-beta-L-arabinofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-allopyranoside" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H45 N5 O14" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-02 
_chem_comp.pdbx_modified_date                    2018-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        615.628 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B6M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WNT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B6M C11 C1  C 0 1 N N S 189.270 86.910 -11.454 -4.454 0.887  -1.397 C11 B6M 1  
B6M O11 O1  O 0 1 N N N 189.905 88.082 -11.738 -3.242 0.300  -0.918 O11 B6M 2  
B6M C21 C2  C 0 1 N N R 188.125 87.182 -10.478 -4.288 2.408  -1.474 C21 B6M 3  
B6M N21 N1  N 0 1 N N N 188.188 88.598 -10.012 -3.151 2.734  -2.346 N21 B6M 4  
B6M C31 C3  C 0 1 N N S 188.122 86.291 -9.296  -4.028 2.957  -0.068 C31 B6M 5  
B6M O31 O2  O 0 1 N N N 187.217 86.879 -8.315  -2.802 2.423  0.435  O31 B6M 6  
B6M C41 C4  C 0 1 N N S 189.449 86.096 -8.630  -5.183 2.545  0.851  C41 B6M 7  
B6M O41 O3  O 0 1 N N N 189.706 87.245 -7.848  -4.916 2.990  2.182  O41 B6M 8  
B6M C51 C5  C 0 1 N N R 190.630 85.872 -9.601  -5.314 1.019  0.838  C51 B6M 9  
B6M O51 O4  O 0 1 N N N 190.238 85.829 -11.011 -5.523 0.571  -0.503 O51 B6M 10 
B6M C61 C6  C 0 1 N N N 191.256 84.580 -9.254  -6.503 0.602  1.706  C61 B6M 11 
B6M O61 O5  O 0 1 N N N 192.647 84.751 -9.222  -6.555 -0.823 1.789  O61 B6M 12 
B6M C12 C7  C 0 1 N N R 191.893 90.307 -14.132 -2.289 -3.730 -0.041 C12 B6M 13 
B6M N12 N2  N 0 1 N N N 193.113 90.891 -14.704 -2.254 -5.194 -0.144 N12 B6M 14 
B6M C22 C8  C 0 1 N N N 192.079 90.174 -12.612 -3.733 -3.266 0.157  C22 B6M 15 
B6M C32 C9  C 0 1 N N R 192.198 88.729 -12.131 -3.770 -1.741 0.265  C32 B6M 16 
B6M N32 N3  N 0 1 N N N 192.227 88.717 -10.656 -2.956 -1.311 1.411  N32 B6M 17 
B6M C42 C10 C 0 1 N N R 191.031 87.848 -12.594 -3.208 -1.125 -1.018 C42 B6M 18 
B6M C52 C11 C 0 1 N N S 190.673 88.032 -14.089 -1.764 -1.588 -1.217 C52 B6M 19 
B6M O52 O6  O 0 1 N N N 189.316 88.419 -14.282 -0.973 -1.171 -0.102 O52 B6M 20 
B6M C62 C12 C 0 1 N N S 191.616 88.981 -14.849 -1.727 -3.114 -1.324 C62 B6M 21 
B6M O62 O7  O 0 1 N N N 191.056 89.262 -16.086 -0.378 -3.547 -1.509 O62 B6M 22 
B6M C13 C13 C 0 1 N N R 188.689 87.422 -14.857 0.397  -0.921 -0.423 C13 B6M 23 
B6M C23 C14 C 0 1 N N R 188.134 87.807 -16.295 1.210  -0.609 0.859  C23 B6M 24 
B6M O23 O8  O 0 1 N N N 188.864 89.024 -16.843 0.436  0.164  1.778  O23 B6M 25 
B6M C33 C15 C 0 1 N N R 186.951 88.066 -16.115 2.393  0.219  0.300  C33 B6M 26 
B6M O33 O9  O 0 1 N N N 186.164 87.681 -17.375 3.541  -0.610 0.115  O33 B6M 27 
B6M C43 C16 C 0 1 N N S 186.470 87.155 -14.823 1.880  0.741  -1.057 C43 B6M 28 
B6M O43 O10 O 0 1 N N N 187.481 87.033 -14.055 0.525  0.286  -1.205 O43 B6M 29 
B6M C53 C17 C 0 1 N N N 185.347 87.842 -14.045 1.920  2.271  -1.074 C53 B6M 30 
B6M O53 O11 O 0 1 N N N 185.220 87.208 -12.779 1.555  2.742  -2.373 O53 B6M 31 
B6M C14 C18 C 0 1 N N S 185.056 88.580 -17.502 4.414  -0.655 1.245  C14 B6M 32 
B6M C24 C19 C 0 1 N N R 185.311 89.609 -18.561 5.537  -1.663 0.984  C24 B6M 33 
B6M N24 N4  N 0 1 N N N 185.938 90.816 -17.917 6.404  -1.750 2.167  N24 B6M 34 
B6M C34 C20 C 0 1 N N R 184.061 90.014 -19.208 6.360  -1.197 -0.221 C34 B6M 35 
B6M O34 O12 O 0 1 N N N 183.713 88.998 -20.193 5.532  -1.175 -1.386 O34 B6M 36 
B6M C44 C21 C 0 1 N N R 182.931 90.129 -18.240 6.896  0.211  0.054  C44 B6M 37 
B6M O44 O13 O 0 1 N N N 181.783 90.647 -18.911 7.605  0.684  -1.093 O44 B6M 38 
B6M C54 C22 C 0 1 N N S 182.583 88.757 -17.603 5.721  1.146  0.351  C54 B6M 39 
B6M O54 O14 O 0 1 N N N 183.827 87.839 -17.777 4.979  0.639  1.463  O54 B6M 40 
B6M C64 C23 C 0 1 N N N 182.310 88.898 -16.204 6.252  2.542  0.686  C64 B6M 41 
B6M N64 N5  N 0 1 N N N 182.861 90.154 -15.650 5.124  3.439  0.971  N64 B6M 42 
B6M H1  H1  H 0 1 N N N 188.801 86.542 -12.379 -4.681 0.496  -2.388 H1  B6M 43 
B6M H2  H2  H 0 1 N N N 187.179 87.040 -11.022 -5.197 2.853  -1.878 H2  B6M 44 
B6M H3  H3  H 0 1 N N N 187.438 88.773 -9.374  -3.297 2.376  -3.278 H3  B6M 45 
B6M H4  H4  H 0 1 N N N 189.061 88.759 -9.552  -2.981 3.728  -2.362 H4  B6M 46 
B6M H6  H6  H 0 1 N N N 187.734 85.307 -9.597  -3.965 4.045  -0.108 H6  B6M 47 
B6M H7  H7  H 0 1 N N N 187.190 86.331 -7.540  -2.575 2.730  1.324  H7  B6M 48 
B6M H8  H8  H 0 1 N N N 189.381 85.215 -7.975  -6.110 2.994  0.495  H8  B6M 49 
B6M H9  H9  H 0 1 N N N 188.983 87.389 -7.248  -5.607 2.762  2.819  H9  B6M 50 
B6M H10 H10 H 0 1 N N N 191.360 86.680 -9.450  -4.401 0.573  1.233  H10 B6M 51 
B6M H11 H11 H 0 1 N N N 190.901 84.249 -8.267  -6.387 1.020  2.706  H11 B6M 52 
B6M H12 H12 H 0 1 N N N 190.993 83.826 -10.010 -7.426 0.975  1.262  H12 B6M 53 
B6M H13 H13 H 0 1 N N N 193.063 83.926 -9.000  -7.286 -1.159 2.326  H13 B6M 54 
B6M H14 H14 H 0 1 N N N 191.047 90.984 -14.318 -1.685 -3.411 0.809  H14 B6M 55 
B6M H15 H15 H 0 1 N N N 193.312 91.759 -14.249 -2.620 -5.625 0.692  H15 B6M 56 
B6M H16 H16 H 0 1 N N N 193.878 90.261 -14.570 -2.753 -5.511 -0.962 H16 B6M 57 
B6M H18 H18 H 0 1 N N N 192.995 90.712 -12.326 -4.337 -3.585 -0.692 H18 B6M 58 
B6M H19 H19 H 0 1 N N N 191.213 90.635 -12.115 -4.133 -3.705 1.072  H19 B6M 59 
B6M H20 H20 H 0 1 N N N 193.135 88.304 -12.519 -4.799 -1.411 0.406  H20 B6M 60 
B6M H21 H21 H 0 1 N N N 192.305 87.774 -10.331 -2.879 -0.306 1.443  H21 B6M 61 
B6M H22 H22 H 0 1 N N N 193.012 89.246 -10.334 -3.330 -1.673 2.275  H22 B6M 62 
B6M H24 H24 H 0 1 N N N 191.348 86.802 -12.468 -3.812 -1.444 -1.868 H24 B6M 63 
B6M H25 H25 H 0 1 N N N 190.800 87.043 -14.553 -1.364 -1.150 -2.131 H25 B6M 64 
B6M H26 H26 H 0 1 N N N 192.577 88.463 -14.984 -2.331 -3.433 -2.174 H26 B6M 65 
B6M H27 H27 H 0 1 N N N 190.877 88.450 -16.545 -0.280 -4.506 -1.586 H27 B6M 66 
B6M H28 H28 H 0 1 N N N 189.339 86.542 -14.971 0.826  -1.770 -0.956 H28 B6M 67 
B6M H29 H29 H 0 1 N N N 188.305 86.954 -16.968 1.566  -1.527 1.327  H29 B6M 68 
B6M H30 H30 H 0 1 N N N 189.780 88.810 -16.978 -0.316 -0.312 2.156  H30 B6M 69 
B6M H31 H31 H 0 1 N N N 186.751 89.120 -15.874 2.625  1.051  0.965  H31 B6M 70 
B6M H32 H32 H 0 1 N N N 186.104 86.193 -15.211 2.495  0.343  -1.863 H32 B6M 71 
B6M H33 H33 H 0 1 N N N 185.590 88.906 -13.904 1.220  2.661  -0.336 H33 B6M 72 
B6M H34 H34 H 0 1 N N N 184.402 87.752 -14.601 2.928  2.610  -0.835 H34 B6M 73 
B6M H35 H35 H 0 1 N N N 184.525 87.625 -12.284 1.559  3.705  -2.457 H35 B6M 74 
B6M H36 H36 H 0 1 N N N 184.928 89.111 -16.547 3.851  -0.959 2.127  H36 B6M 75 
B6M H37 H37 H 0 1 N N N 186.003 89.197 -19.311 5.106  -2.642 0.775  H37 B6M 76 
B6M H38 H38 H 0 1 N N N 186.793 90.550 -17.472 5.882  -2.050 2.976  H38 B6M 77 
B6M H39 H39 H 0 1 N N N 186.126 91.506 -18.616 7.189  -2.360 1.995  H39 B6M 78 
B6M H41 H41 H 0 1 N N N 184.205 90.982 -19.711 7.195  -1.881 -0.379 H41 B6M 79 
B6M H42 H42 H 0 1 N N N 182.903 89.241 -20.626 5.990  -0.889 -2.188 H42 B6M 80 
B6M H43 H43 H 0 1 N N N 183.227 90.814 -17.431 7.566  0.184  0.913  H43 B6M 81 
B6M H44 H44 H 0 1 N N N 181.063 90.721 -18.296 8.361  0.136  -1.342 H44 B6M 82 
B6M H45 H45 H 0 1 N N N 181.726 88.315 -18.132 5.072  1.204  -0.523 H45 B6M 83 
B6M H46 H46 H 0 1 N N N 181.220 88.893 -16.054 6.900  2.484  1.560  H46 B6M 84 
B6M H47 H47 H 0 1 N N N 182.758 88.048 -15.668 6.818  2.928  -0.162 H47 B6M 85 
B6M H48 H48 H 0 1 N N N 182.648 90.210 -14.675 5.449  4.368  1.195  H48 B6M 86 
B6M H49 H49 H 0 1 N N N 183.853 90.167 -15.775 4.474  3.460  0.199  H49 B6M 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B6M O34 C34 SING N N 1  
B6M C34 C24 SING N N 2  
B6M C34 C44 SING N N 3  
B6M O44 C44 SING N N 4  
B6M C24 N24 SING N N 5  
B6M C24 C14 SING N N 6  
B6M C44 C54 SING N N 7  
B6M O54 C54 SING N N 8  
B6M O54 C14 SING N N 9  
B6M C54 C64 SING N N 10 
B6M C14 O33 SING N N 11 
B6M O33 C33 SING N N 12 
B6M O23 C23 SING N N 13 
B6M C23 C33 SING N N 14 
B6M C23 C13 SING N N 15 
B6M C64 N64 SING N N 16 
B6M C33 C43 SING N N 17 
B6M O62 C62 SING N N 18 
B6M C13 O52 SING N N 19 
B6M C13 O43 SING N N 20 
B6M C62 C12 SING N N 21 
B6M C62 C52 SING N N 22 
B6M C43 O43 SING N N 23 
B6M C43 C53 SING N N 24 
B6M N12 C12 SING N N 25 
B6M O52 C52 SING N N 26 
B6M C12 C22 SING N N 27 
B6M C52 C42 SING N N 28 
B6M C53 O53 SING N N 29 
B6M C22 C32 SING N N 30 
B6M C42 C32 SING N N 31 
B6M C42 O11 SING N N 32 
B6M C32 N32 SING N N 33 
B6M O11 C11 SING N N 34 
B6M C11 O51 SING N N 35 
B6M C11 C21 SING N N 36 
B6M O51 C51 SING N N 37 
B6M C21 N21 SING N N 38 
B6M C21 C31 SING N N 39 
B6M C51 C61 SING N N 40 
B6M C51 C41 SING N N 41 
B6M C31 C41 SING N N 42 
B6M C31 O31 SING N N 43 
B6M C61 O61 SING N N 44 
B6M C41 O41 SING N N 45 
B6M C11 H1  SING N N 46 
B6M C21 H2  SING N N 47 
B6M N21 H3  SING N N 48 
B6M N21 H4  SING N N 49 
B6M C31 H6  SING N N 50 
B6M O31 H7  SING N N 51 
B6M C41 H8  SING N N 52 
B6M O41 H9  SING N N 53 
B6M C51 H10 SING N N 54 
B6M C61 H11 SING N N 55 
B6M C61 H12 SING N N 56 
B6M O61 H13 SING N N 57 
B6M C12 H14 SING N N 58 
B6M N12 H15 SING N N 59 
B6M N12 H16 SING N N 60 
B6M C22 H18 SING N N 61 
B6M C22 H19 SING N N 62 
B6M C32 H20 SING N N 63 
B6M N32 H21 SING N N 64 
B6M N32 H22 SING N N 65 
B6M C42 H24 SING N N 66 
B6M C52 H25 SING N N 67 
B6M C62 H26 SING N N 68 
B6M O62 H27 SING N N 69 
B6M C13 H28 SING N N 70 
B6M C23 H29 SING N N 71 
B6M O23 H30 SING N N 72 
B6M C33 H31 SING N N 73 
B6M C43 H32 SING N N 74 
B6M C53 H33 SING N N 75 
B6M C53 H34 SING N N 76 
B6M O53 H35 SING N N 77 
B6M C14 H36 SING N N 78 
B6M C24 H37 SING N N 79 
B6M N24 H38 SING N N 80 
B6M N24 H39 SING N N 81 
B6M C34 H41 SING N N 82 
B6M O34 H42 SING N N 83 
B6M C44 H43 SING N N 84 
B6M O44 H44 SING N N 85 
B6M C54 H45 SING N N 86 
B6M C64 H46 SING N N 87 
B6M C64 H47 SING N N 88 
B6M N64 H48 SING N N 89 
B6M N64 H49 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B6M SMILES           ACDLabs              12.01 "C1(OC(C(C(C1N)O)O)CO)OC2C(CC(N)C(C2OC3OC(C(C3O)OC4C(N)C(C(C(CN)O4)O)O)CO)O)N" 
B6M InChI            InChI                1.03  
"InChI=1S/C23H45N5O14/c24-2-7-13(32)15(34)10(27)21(37-7)41-19-9(4-30)39-23(17(19)36)42-20-12(31)5(25)1-6(26)18(20)40-22-11(28)16(35)14(33)8(3-29)38-22/h5-23,29-36H,1-4,24-28H2/t5-,6-,7+,8-,9+,10-,11-,12+,13+,14-,15-,16+,17-,18-,19+,20+,21+,22-,23-/m1/s1" 
B6M InChIKey         InChI                1.03  UOZODPSAJZTQNH-JMVAARTISA-N 
B6M SMILES_CANONICAL CACTVS               3.385 "NC[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@H](O[C@H]2CO)O[C@H]3[C@@H](O)[C@H](N)C[C@@H](N)[C@H]3O[C@H]4O[C@H](CO)[C@@H](O)[C@@H](O)[C@H]4N)[C@H](N)[C@@H](O)[C@H]1O" 
B6M SMILES           CACTVS               3.385 "NC[CH]1O[CH](O[CH]2[CH](O)[CH](O[CH]2CO)O[CH]3[CH](O)[CH](N)C[CH](N)[CH]3O[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4N)[CH](N)[CH](O)[CH]1O" 
B6M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@H]([C@@H]([C@@H]([C@@H]([C@@H]1N)O[C@@H]2[C@@H]([C@@H]([C@@H]([C@H](O2)CO)O)O)N)O[C@@H]3[C@@H]([C@H]([C@@H](O3)CO)O[C@H]4[C@@H]([C@H]([C@H]([C@@H](O4)CN)O)O)N)O)O)N" 
B6M SMILES           "OpenEye OEToolkits" 2.0.6 "C1C(C(C(C(C1N)OC2C(C(C(C(O2)CO)O)O)N)OC3C(C(C(O3)CO)OC4C(C(C(C(O4)CN)O)O)N)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B6M "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,3S,4R,6R)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-alpha-L-altropyranosyl)-beta-L-arabinofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-allopyranoside" 
B6M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
;(2~{S},3~{R},4~{R},5~{R},6~{S})-2-(aminomethyl)-5-azanyl-6-[(2~{S},3~{R},4~{R},5~{R})-5-[(1~{S},2~{R},3~{R},5~{R},6~{S})-3,5-bis(azanyl)-2-[(2~{S},3~{R},4~{S},5~{S},6~{R})-3-azanyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-oxidanyl-cyclohexyl]oxy-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-oxane-3,4-diol
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B6M "Create component" 2017-08-02 RCSB 
B6M "Initial release"  2018-02-21 RCSB 
# 
