data_E3M
#

_chem_comp.id                                   E3M
_chem_comp.name                                 "(1R)-4-acetamido-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C10 H20 N2 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(1R)-4-(acetylamino)-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-11-30
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       328.339
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    E3M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6BR6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     E3M
_pdbx_chem_comp_synonyms.name        "(1R)-4-(acetylamino)-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
E3M  C1   C1   C  0  1  N  N  R   6.071  23.932   9.764   1.513   0.936  -0.515  C1   E3M   1  
E3M  C8   C8   C  0  1  N  N  N   9.473  19.712  11.318  -0.850  -4.087   0.414  C8   E3M   2  
E3M  C2   C2   C  0  1  N  N  N   6.548  25.357   9.544   0.775   2.206  -0.082  C2   E3M   3  
E3M  C3   C3   C  0  1  N  N  S   7.496  25.762  10.667  -0.674   2.137  -0.571  C3   E3M   4  
E3M  C4   C4   C  0  1  N  N  R   8.609  24.720  10.807  -1.329   0.868  -0.018  C4   E3M   5  
E3M  C9   C9   C  0  1  N  N  N  10.725  25.469  11.781  -3.707   1.389   0.080  C9   E3M   6  
E3M  C10  C10  C  0  1  N  N  N  11.459  25.799  13.043  -5.110   1.271  -0.457  C10  E3M   7  
E3M  C5   C5   C  0  1  N  N  R   8.040  23.303  10.941  -0.510  -0.350  -0.453  C5   E3M   8  
E3M  C6   C6   C  0  1  N  N  R   9.095  22.210  10.920  -1.124  -1.618   0.146  C6   E3M   9  
E3M  C7   C7   C  0  1  N  N  R   8.477  20.854  11.262  -0.236  -2.819  -0.185  C7   E3M  10  
E3M  N3   N3   N  0  1  N  N  N   8.085  27.107  10.397  -1.410   3.317  -0.096  N3   E3M  11  
E3M  N4   N4   N  0  1  N  N  N   9.473  25.043  11.927  -2.693   0.753  -0.539  N4   E3M  12  
E3M  OS3  OS3  O  0  1  N  N  N   4.405  22.105   8.999   3.831  -0.325  -0.369  OS3  E3M  13  
E3M  O9   O9   O  0  1  N  N  N  11.249  25.569  10.682  -3.490   2.057   1.068  O9   E3M  14  
E3M  O6   O6   O  0  1  N  N  N   9.707  22.163   9.631  -1.222  -1.475   1.564  O6   E3M  15  
E3M  O7   O7   O  0  1  N  N  N   7.835  20.978  12.522  -0.138  -2.962  -1.604  O7   E3M  16  
E3M  O8   O8   O  0  1  N  N  N  10.474  19.936  12.305   0.036  -5.189   0.205  O8   E3M  17  
E3M  O5   O5   O  0  1  N  N  N   7.195  23.047   9.809   0.835  -0.208   0.008  O5   E3M  18  
E3M  S1   S1   S  0  1  N  N  N   4.919  23.344   8.506   3.211   0.976   0.122  S1   E3M  19  
E3M  OS1  OS1  O  0  1  N  N  N   3.912  24.353   8.395   3.964   1.990  -0.530  OS1  E3M  20  
E3M  OS2  OS2  O  0  1  N  N  N   5.678  23.169   7.308   3.216   0.854   1.537  OS2  E3M  21  
E3M  H1   H1   H  0  1  N  N  N   5.521  23.887  10.715   1.533   0.881  -1.603  H1   E3M  22  
E3M  H18  H18  H  0  1  N  N  N   8.937  18.782  11.559  -1.007  -3.944   1.483  H18  E3M  23  
E3M  H19  H19  H  0  1  N  N  N   9.957  19.612  10.335  -1.805  -4.292  -0.070  H19  E3M  24  
E3M  H3   H3   H  0  1  N  N  N   7.074  25.421   8.580   0.789   2.283   1.006  H3   E3M  25  
E3M  H2   H2   H  0  1  N  N  N   5.682  26.035   9.535   1.265   3.078  -0.516  H2   E3M  26  
E3M  H4   H4   H  0  1  N  N  N   6.930  25.800  11.609  -0.691   2.110  -1.661  H4   E3M  27  
E3M  H8   H8   H  0  1  N  N  N   9.208  24.750   9.885  -1.357   0.918   1.071  H8   E3M  28  
E3M  H12  H12  H  0  1  N  N  N  12.482  26.123  12.799  -5.108   0.636  -1.343  H12  E3M  29  
E3M  H10  H10  H  0  1  N  N  N  10.934  26.609  13.571  -5.755   0.831   0.304  H10  E3M  30  
E3M  H11  H11  H  0  1  N  N  N  11.501  24.908  13.687  -5.483   2.261  -0.721  H11  E3M  31  
E3M  H13  H13  H  0  1  N  N  N   7.463  23.233  11.875  -0.516  -0.423  -1.540  H13  E3M  32  
E3M  H14  H14  H  0  1  N  N  N   9.854  22.445  11.681  -2.118  -1.773  -0.274  H14  E3M  33  
E3M  H16  H16  H  0  1  N  N  N   7.728  20.618  10.492   0.757  -2.664   0.234  H16  E3M  34  
E3M  H5   H5   H  0  1  N  N  N   8.703  27.356  11.142  -0.992   4.167  -0.442  H5   E3M  35  
E3M  H6   H6   H  0  1  N  N  N   8.594  27.081   9.537  -2.385   3.262  -0.352  H6   E3M  36  
E3M  H9   H9   H  0  1  N  N  N   9.110  24.941  12.853  -2.866   0.219  -1.330  H9   E3M  37  
E3M  H15  H15  H  0  1  N  N  N  10.367  21.480   9.618  -0.373  -1.333   2.005  H15  E3M  38  
E3M  H17  H17  H  0  1  N  N  N   7.441  20.147  12.760  -0.987  -3.104  -2.045  H17  E3M  39  
E3M  H20  H20  H  0  1  N  N  N  11.080  19.204  12.314  -0.290  -6.027   0.560  H20  E3M  40  
E3M  H21  H21  H  0  1  N  N  N   4.674  21.399   8.423   4.753  -0.446  -0.103  H21  E3M  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
E3M  OS2  S1   DOUB  N  N   1  
E3M  OS1  S1   DOUB  N  N   2  
E3M  S1   OS3  SING  N  N   3  
E3M  S1   C1   SING  N  N   4  
E3M  C2   C1   SING  N  N   5  
E3M  C2   C3   SING  N  N   6  
E3M  O6   C6   SING  N  N   7  
E3M  C1   O5   SING  N  N   8  
E3M  O5   C5   SING  N  N   9  
E3M  N3   C3   SING  N  N  10  
E3M  C3   C4   SING  N  N  11  
E3M  O9   C9   DOUB  N  N  12  
E3M  C4   C5   SING  N  N  13  
E3M  C4   N4   SING  N  N  14  
E3M  C6   C5   SING  N  N  15  
E3M  C6   C7   SING  N  N  16  
E3M  C7   C8   SING  N  N  17  
E3M  C7   O7   SING  N  N  18  
E3M  C8   O8   SING  N  N  19  
E3M  C9   N4   SING  N  N  20  
E3M  C9   C10  SING  N  N  21  
E3M  C1   H1   SING  N  N  22  
E3M  C8   H18  SING  N  N  23  
E3M  C8   H19  SING  N  N  24  
E3M  C2   H3   SING  N  N  25  
E3M  C2   H2   SING  N  N  26  
E3M  C3   H4   SING  N  N  27  
E3M  C4   H8   SING  N  N  28  
E3M  C10  H12  SING  N  N  29  
E3M  C10  H10  SING  N  N  30  
E3M  C10  H11  SING  N  N  31  
E3M  C5   H13  SING  N  N  32  
E3M  C6   H14  SING  N  N  33  
E3M  C7   H16  SING  N  N  34  
E3M  N3   H5   SING  N  N  35  
E3M  N3   H6   SING  N  N  36  
E3M  N4   H9   SING  N  N  37  
E3M  O6   H15  SING  N  N  38  
E3M  O7   H17  SING  N  N  39  
E3M  O8   H20  SING  N  N  40  
E3M  OS3  H21  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
E3M  SMILES            ACDLabs               12.01  "C1(OC(C(C(C1)N)NC(C)=O)C(C(CO)O)O)S(O)(=O)=O"  
E3M  InChI             InChI                 1.03   "InChI=1S/C10H20N2O8S/c1-4(14)12-8-5(11)2-7(21(17,18)19)20-10(8)9(16)6(15)3-13/h5-10,13,15-16H,2-3,11H2,1H3,(H,12,14)(H,17,18,19)/t5-,6+,7+,8+,9+,10+/m0/s1"  
E3M  InChIKey          InChI                 1.03   XAZGDFCTWHWJMA-IHICSVBISA-N  
E3M  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](N)C[C@H](O[C@H]1[C@H](O)[C@H](O)CO)[S](O)(=O)=O"  
E3M  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](N)C[CH](O[CH]1[CH](O)[CH](O)CO)[S](O)(=O)=O"  
E3M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=O)N[C@@H]1[C@H](C[C@H](O[C@H]1[C@@H]([C@@H](CO)O)O)S(=O)(=O)O)N"  
E3M  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=O)NC1C(CC(OC1C(C(CO)O)O)S(=O)(=O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
E3M  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R)-4-(acetylamino)-3-amino-1,5-anhydro-2,3,4-trideoxy-1-sulfo-D-glycero-D-galacto-octitol"  
E3M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},4~{S},5~{R},6~{R})-5-acetamido-4-azanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
E3M  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
E3M  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
E3M  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
E3M  "Create component"    2017-11-30  RCSB  
E3M  "Initial release"     2018-03-07  RCSB  
E3M  "Modify atom id"      2020-05-04  RCSB  
E3M  "Other modification"  2020-07-03  RCSB  
E3M  "Modify name"         2020-07-17  RCSB  
E3M  "Modify synonyms"     2020-07-17  RCSB  
##
