data_V8M
#

_chem_comp.id                                   V8M
_chem_comp.name                                 "N-[2-(2-hydroxy-5-nitrophenyl)ethyl]-5-[(3aS,4S,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H24 N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-17
_chem_comp.pdbx_modified_date                   2021-02-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       408.472
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V8M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XND
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V8M  C10   C1   C  0  1  N  N  N  -23.325  10.147  -15.516   3.103   0.473  -1.000  C10   V8M   1  
V8M  C13   C2   C  0  1  N  N  S  -20.289  11.483  -17.651   6.735   1.259   0.086  C13   V8M   2  
V8M  C15   C3   C  0  1  N  N  N  -19.178  13.344  -17.551   7.413  -0.005   1.872  C15   V8M   3  
V8M  C22   C4   C  0  1  Y  N  N  -29.049   4.456  -16.281  -6.368   0.438  -0.444  C22   V8M   4  
V8M  C28   C5   C  0  1  Y  N  N  -27.704   2.213  -17.206  -7.030  -1.860   0.951  C28   V8M   5  
V8M  C02   C6   C  0  1  Y  N  N  -27.103   3.075  -16.302  -5.841  -1.800   0.238  C02   V8M   6  
V8M  C03   C7   C  0  1  Y  N  N  -27.783   4.183  -15.834  -5.512  -0.647  -0.461  C03   V8M   7  
V8M  C04   C8   C  0  1  N  N  N  -27.115   5.162  -14.853  -4.222  -0.578  -1.237  C04   V8M   8  
V8M  C05   C9   C  0  1  N  N  N  -26.473   6.252  -15.715  -3.066  -0.281  -0.279  C05   V8M   9  
V8M  C07   C10  C  0  1  N  N  N  -25.994   8.678  -15.393  -0.653   0.037  -0.393  C07   V8M  10  
V8M  C08   C11  C  0  1  N  N  N  -25.550   9.755  -14.387   0.637   0.106  -1.169  C08   V8M  11  
V8M  C09   C12  C  0  1  N  N  N  -24.621  10.818  -15.018   1.793   0.403  -0.212  C09   V8M  12  
V8M  C11   C13  C  0  1  N  N  N  -22.448  11.103  -16.345   4.259   0.769  -0.042  C11   V8M  13  
V8M  C12   C14  C  0  1  N  N  S  -21.206  10.454  -16.681   5.568   0.839  -0.830  C12   V8M  14  
V8M  C18   C15  C  0  1  N  N  S  -18.976  11.181  -17.440   8.041   0.535  -0.264  C18   V8M  15  
V8M  C19   C16  C  0  1  N  N  N  -18.919   9.884  -16.299   7.875  -0.438  -1.447  C19   V8M  16  
V8M  C23   C17  C  0  1  Y  N  N  -29.659   3.595  -17.184  -7.552   0.375   0.267  C23   V8M  17  
V8M  C27   C18  C  0  1  Y  N  N  -28.983   2.467  -17.648  -7.882  -0.773   0.964  C27   V8M  18  
V8M  N06   N1   N  0  1  N  N  N  -26.047   7.337  -14.853  -1.812  -0.214  -1.033  N06   V8M  19  
V8M  N14   N2   N  0  1  N  N  N  -20.486  12.785  -17.770   6.448   0.830   1.464  N14   V8M  20  
V8M  N16   N3   N  0  1  N  N  N  -18.227  12.254  -17.423   8.361  -0.229   0.952  N16   V8M  21  
V8M  N24   N4   N  0  1  N  N  N  -30.997   3.924  -17.631  -8.467   1.538   0.283  N24   V8M  22  
V8M  O01   O1   O  0  1  N  N  N  -25.811   2.824  -15.836  -5.001  -2.868   0.223  O01   V8M  23  
V8M  O17   O2   O  0  1  N  N  N  -18.892  14.486  -17.540   7.427  -0.513   2.976  O17   V8M  24  
V8M  O21   O3   O  0  1  N  N  N  -26.305   8.883  -16.538  -0.648   0.208   0.808  O21   V8M  25  
V8M  O25   O4   O  0  1  N  N  N  -32.064   3.884  -16.728  -8.177   2.549  -0.330  O25   V8M  26  
V8M  O26   O5   O  0  1  N  N  N  -31.176   4.256  -18.750  -9.510   1.484   0.910  O26   V8M  27  
V8M  S20   S1   S  0  1  N  N  N  -20.083  10.372  -15.435   6.079  -0.835  -1.395  S20   V8M  28  
V8M  H102  H1   H  0  0  N  N  N  -22.748   9.805  -14.645   3.279  -0.481  -1.497  H102  V8M  29  
V8M  H101  H2   H  0  0  N  N  N  -23.593   9.282  -16.141   3.036   1.265  -1.745  H101  V8M  30  
V8M  H131  H3   H  0  0  N  N  N  -20.498  11.080  -18.653   6.878   2.339   0.043  H131  V8M  31  
V8M  H221  H4   H  0  0  N  N  N  -29.570   5.336  -15.933  -6.109   1.337  -0.984  H221  V8M  32  
V8M  H281  H5   H  0  0  N  N  N  -27.170   1.344  -17.563  -7.289  -2.757   1.495  H281  V8M  33  
V8M  H042  H6   H  0  0  N  N  N  -27.866   5.600  -14.180  -4.046  -1.531  -1.735  H042  V8M  34  
V8M  H041  H7   H  0  0  N  N  N  -26.348   4.644  -14.259  -4.288   0.215  -1.982  H041  V8M  35  
V8M  H052  H8   H  0  0  N  N  N  -25.603   5.839  -16.247  -3.242   0.672   0.219  H052  V8M  36  
V8M  H051  H9   H  0  0  N  N  N  -27.206   6.626  -16.445  -3.000  -1.074   0.467  H051  V8M  37  
V8M  H081  H10  H  0  0  N  N  N  -26.445  10.259  -13.994   0.813  -0.847  -1.667  H081  V8M  38  
V8M  H082  H11  H  0  0  N  N  N  -25.013   9.265  -13.561   0.571   0.899  -1.915  H082  V8M  39  
V8M  H091  H12  H  0  0  N  N  N  -24.372  11.579  -14.264   1.859  -0.390   0.534  H091  V8M  40  
V8M  H092  H13  H  0  0  N  N  N  -25.134  11.295  -15.866   1.617   1.356   0.286  H092  V8M  41  
V8M  H112  H14  H  0  0  N  N  N  -22.979  11.378  -17.269   4.083   1.722   0.456  H112  V8M  42  
V8M  H111  H15  H  0  0  N  N  N  -22.240  12.010  -15.758   4.325  -0.023   0.703  H111  V8M  43  
V8M  H121  H16  H  0  0  N  N  N  -21.324   9.472  -17.162   5.474   1.523  -1.674  H121  V8M  44  
V8M  H181  H18  H  0  0  N  N  N  -18.678  10.658  -18.361   8.829   1.259  -0.473  H1    V8M  45  
V8M  H191  H19  H  0  0  N  N  N  -17.968   9.846  -15.747   8.136   0.047  -2.387  H191  V8M  46  
V8M  H192  H20  H  0  0  N  N  N  -19.115   8.905  -16.760   8.473  -1.337  -1.295  H2    V8M  47  
V8M  H271  H22  H  0  0  N  N  N  -29.459   1.798  -18.349  -8.807  -0.819   1.519  H271  V8M  48  
V8M  H061  H23  H  0  0  N  N  N  -25.794   7.161  -13.902  -1.816  -0.351  -1.994  H061  V8M  49  
V8M  H141  H24  H  0  0  N  N  N  -21.340  13.267  -17.966   5.683   1.107   1.991  H141  V8M  50  
V8M  H161  H25  H  0  0  N  N  N  -17.232  12.310  -17.341   9.134  -0.803   1.069  H161  V8M  51  
V8M  H011  H26  H  0  0  N  N  N  -25.555   3.508  -15.228  -5.171  -3.492  -0.495  H011  V8M  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V8M  C10  C09   SING  N  N   1  
V8M  C10  C11   SING  N  N   2  
V8M  C13  C12   SING  N  N   3  
V8M  C13  C18   SING  N  N   4  
V8M  C13  N14   SING  N  N   5  
V8M  C15  N14   SING  N  N   6  
V8M  C15  N16   SING  N  N   7  
V8M  C15  O17   DOUB  N  N   8  
V8M  C22  C03   DOUB  Y  N   9  
V8M  C22  C23   SING  Y  N  10  
V8M  C28  C02   DOUB  Y  N  11  
V8M  C28  C27   SING  Y  N  12  
V8M  C02  C03   SING  Y  N  13  
V8M  C02  O01   SING  N  N  14  
V8M  C03  C04   SING  N  N  15  
V8M  C04  C05   SING  N  N  16  
V8M  C05  N06   SING  N  N  17  
V8M  C07  C08   SING  N  N  18  
V8M  C07  N06   SING  N  N  19  
V8M  C07  O21   DOUB  N  N  20  
V8M  C08  C09   SING  N  N  21  
V8M  C11  C12   SING  N  N  22  
V8M  C12  S20   SING  N  N  23  
V8M  C18  N16   SING  N  N  24  
V8M  C19  S20   SING  N  N  25  
V8M  C23  C27   DOUB  Y  N  26  
V8M  C23  N24   SING  N  N  27  
V8M  N24  O25   DOUB  N  N  28  
V8M  N24  O26   DOUB  N  N  29  
V8M  C10  H102  SING  N  N  30  
V8M  C10  H101  SING  N  N  31  
V8M  C13  H131  SING  N  N  32  
V8M  C22  H221  SING  N  N  33  
V8M  C28  H281  SING  N  N  34  
V8M  C04  H042  SING  N  N  35  
V8M  C04  H041  SING  N  N  36  
V8M  C05  H052  SING  N  N  37  
V8M  C05  H051  SING  N  N  38  
V8M  C08  H081  SING  N  N  39  
V8M  C08  H082  SING  N  N  40  
V8M  C09  H091  SING  N  N  41  
V8M  C09  H092  SING  N  N  42  
V8M  C11  H112  SING  N  N  43  
V8M  C11  H111  SING  N  N  44  
V8M  C12  H121  SING  N  N  45  
V8M  C18  H181  SING  N  N  46  
V8M  C19  H191  SING  N  N  47  
V8M  C19  H192  SING  N  N  48  
V8M  C27  H271  SING  N  N  49  
V8M  N06  H061  SING  N  N  50  
V8M  N14  H141  SING  N  N  51  
V8M  N16  H161  SING  N  N  52  
V8M  O01  H011  SING  N  N  53  
V8M  C18  C19   SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V8M  SMILES            ACDLabs               12.01  "C(CCC(NCCc1cc(ccc1O)N(=O)=O)=O)CC3C2C(NC(N2)=O)CS3"  
V8M  InChI             InChI                 1.03   "InChI=1S/C18H24N4O5S/c23-14-6-5-12(22(26)27)9-11(14)7-8-19-16(24)4-2-1-3-15-17-13(10-28-15)20-18(25)21-17/h5-6,9,13,15,17,23H,1-4,7-8,10H2,(H,19,24)(H2,20,21,25)/t13-,15+,17+/m1/s1"  
V8M  InChIKey          InChI                 1.03   GGNOUTGIVZKNRF-KMFMINBZSA-N  
V8M  SMILES_CANONICAL  CACTVS                3.385  "Oc1ccc(cc1CCNC(=O)CCCC[C@@H]2SC[C@H]3NC(=O)N[C@H]23)[N](=O)=O"  
V8M  SMILES            CACTVS                3.385  "Oc1ccc(cc1CCNC(=O)CCCC[CH]2SC[CH]3NC(=O)N[CH]23)[N](=O)=O"  
V8M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N(=O)=O)CCNC(=O)CCCC[C@H]2[C@@H]3C(CS2)NC(=O)N3)O"  
V8M  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N(=O)=O)CCNC(=O)CCCCC2C3C(CS2)NC(=O)N3)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V8M  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[2-(2-hydroxy-5-nitrophenyl)ethyl]-5-[(3aS,4S,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide"  
V8M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[(3~{a}~{S},4~{S})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-(5-nitro-2-oxidanyl-phenyl)ethyl]pentanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V8M  "Create component"  2020-07-17  RCSB  
V8M  "Modify atom id"    2020-07-17  RCSB  
V8M  "Initial release"   2021-03-03  RCSB  
##
