data_Y7M
# 
_chem_comp.id                                    Y7M 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-(((adamantan-1-ylmethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H41 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-02-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        543.673 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y7M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LKT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y7M C02 C1  C 0 1 N N N N N N 10.748 23.868 26.828 -2.274 0.559  0.754  C02 Y7M 1  
Y7M C04 C2  C 0 1 N N S N N N 11.687 21.964 28.005 0.116  0.311  1.159  C04 Y7M 2  
Y7M C05 C3  C 0 1 N N N N N N 12.828 21.645 29.037 0.213  -0.242 2.582  C05 Y7M 3  
Y7M C06 C4  C 0 1 N N N N N N 14.223 21.915 28.390 -0.897 0.366  3.442  C06 Y7M 4  
Y7M C07 C5  C 0 1 N N N N N N 14.562 20.889 27.285 -0.879 -0.279 4.829  C07 Y7M 5  
Y7M C08 C6  C 0 1 N N N N N N 15.318 21.904 29.472 -0.670 1.873  3.577  C08 Y7M 6  
Y7M C09 C7  C 0 1 N N N N N N 10.357 21.393 28.460 1.280  -0.192 0.345  C09 Y7M 7  
Y7M C11 C8  C 0 1 N N S N N N 8.620  19.628 28.379 3.673  -0.391 -0.070 C11 Y7M 8  
Y7M C12 C9  C 0 1 N N N N N N 7.713  19.608 27.080 4.815  0.625  -0.009 C12 Y7M 9  
Y7M C13 C10 C 0 1 N N S N N N 7.336  21.027 26.624 4.346  1.956  -0.601 C13 Y7M 10 
Y7M C14 C11 C 0 1 N N N N N N 6.412  20.994 25.430 5.451  2.987  -0.528 C14 Y7M 11 
Y7M C16 C12 C 0 1 N N N N N N 5.429  22.442 26.917 4.549  3.168  -2.660 C16 Y7M 12 
Y7M C17 C13 C 0 1 N N N N N N 6.477  21.757 27.698 4.067  1.806  -2.115 C17 Y7M 13 
Y7M C19 C14 C 0 1 N N S N N N 8.910  18.201 28.933 4.151  -1.730 0.496  C19 Y7M 14 
Y7M C23 C15 C 0 1 N N N N N N 9.633  25.649 25.764 -4.609 0.948  0.454  C23 Y7M 15 
Y7M C24 C16 C 0 1 N N N N N N 9.761  27.224 25.752 -5.810 0.336  -0.271 C24 Y7M 16 
Y7M C25 C17 C 0 1 N N N N N N 9.384  27.777 27.120 -7.058 1.174  0.011  C25 Y7M 17 
Y7M C26 C18 C 0 1 N N N N N N 9.396  29.314 27.141 -8.258 0.562  -0.713 C26 Y7M 18 
Y7M C27 C19 C 0 1 N N N N N N 8.517  29.839 26.007 -8.481 -0.867 -0.214 C27 Y7M 19 
Y7M C28 C20 C 0 1 N N N N N N 8.950  29.308 24.624 -7.232 -1.706 -0.497 C28 Y7M 20 
Y7M C29 C21 C 0 1 N N N N N N 8.921  27.778 24.606 -6.032 -1.093 0.228  C29 Y7M 21 
Y7M C30 C22 C 0 1 N N N N N N 10.418 29.730 24.365 -6.962 -1.727 -2.003 C30 Y7M 22 
Y7M C31 C23 C 0 1 N N N N N N 11.348 29.238 25.514 -6.740 -0.298 -2.501 C31 Y7M 23 
Y7M C32 C24 C 0 1 N N N N N N 11.250 27.680 25.539 -5.540 0.314  -1.777 C32 Y7M 24 
Y7M C33 C25 C 0 1 N N N N N N 10.840 29.794 26.874 -7.988 0.540  -2.219 C33 Y7M 25 
Y7M N03 N1  N 0 1 N N N N N N 11.520 23.405 27.859 -1.137 -0.135 0.545  N03 Y7M 26 
Y7M N10 N2  N 0 1 N N N N N N 9.915  20.188 27.987 2.541  0.098  0.722  N10 Y7M 27 
Y7M N15 N3  N 0 1 N N N N N N 5.289  21.807 25.586 5.545  3.646  -1.695 N15 Y7M 28 
Y7M O01 O1  O 0 1 N N N N N N 10.130 23.121 26.041 -2.259 1.555  1.450  O01 Y7M 29 
Y7M O18 O2  O 0 1 N N N N N N 6.554  20.346 24.367 6.149  3.188  0.443  O18 Y7M 30 
Y7M O20 O3  O 0 1 N N N N N N 7.661  17.679 29.433 3.053  -2.642 0.553  O20 Y7M 31 
Y7M O21 O4  O 0 1 N N N N N N 9.609  22.054 29.238 1.082  -0.857 -0.650 O21 Y7M 32 
Y7M O22 O5  O 0 1 N N N N N N 10.673 25.208 26.641 -3.425 0.152  0.186  O22 Y7M 33 
Y7M H1  H1  H 0 1 N N N N N N 11.959 21.518 27.037 0.138  1.400  1.190  H1  Y7M 34 
Y7M H2  H2  H 0 1 N N N N N N 12.707 22.285 29.923 0.101  -1.326 2.559  H2  Y7M 35 
Y7M H3  H3  H 0 1 N N N N N N 12.764 20.589 29.336 1.183  0.015  3.007  H3  Y7M 36 
Y7M H4  H4  H 0 1 N N N N N N 14.199 22.916 27.934 -1.863 0.185  2.970  H4  Y7M 37 
Y7M H5  H5  H 0 1 N N N N N N 15.550 21.119 26.861 0.086  -0.098 5.301  H5  Y7M 38 
Y7M H6  H6  H 0 1 N N N N N N 14.575 19.877 27.716 -1.670 0.155  5.442  H6  Y7M 39 
Y7M H7  H7  H 0 1 N N N N N N 13.802 20.940 26.492 -1.041 -1.352 4.733  H7  Y7M 40 
Y7M H8  H8  H 0 1 N N N N N N 15.069 22.637 30.254 0.296  2.054  4.049  H8  Y7M 41 
Y7M H9  H9  H 0 1 N N N N N N 15.383 20.900 29.917 -0.683 2.332  2.588  H9  Y7M 42 
Y7M H10 H10 H 0 1 N N N N N N 16.285 22.167 29.018 -1.461 2.306  4.189  H10 Y7M 43 
Y7M H11 H11 H 0 1 N N N N N N 8.139  20.241 29.155 3.361  -0.525 -1.106 H11 Y7M 44 
Y7M H12 H12 H 0 1 N N N N N N 6.792  19.048 27.298 5.113  0.775  1.029  H12 Y7M 45 
Y7M H13 H13 H 0 1 N N N N N N 8.263  19.108 26.269 5.665  0.252  -0.581 H13 Y7M 46 
Y7M H14 H14 H 0 1 N N N N N N 8.241  21.611 26.401 3.456  2.310  -0.082 H14 Y7M 47 
Y7M H15 H15 H 0 1 N N N N N N 5.704  23.499 26.789 5.004  3.042  -3.642 H15 Y7M 48 
Y7M H16 H16 H 0 1 N N N N N N 4.472  22.374 27.455 3.714  3.867  -2.720 H16 Y7M 49 
Y7M H17 H17 H 0 1 N N N N N N 6.032  21.035 28.399 4.649  0.988  -2.539 H17 Y7M 50 
Y7M H18 H18 H 0 1 N N N N N N 7.085  22.484 28.257 3.003  1.664  -2.303 H18 Y7M 51 
Y7M H19 H19 H 0 1 N N N N N N 9.583  18.335 29.793 4.550  -1.579 1.499  H19 Y7M 52 
Y7M S1  S1  S 0 1 N Y N N N N 9.303  17.569 28.164 5.448  -2.411 -0.574 S1  Y7M 53 
Y7M H21 H21 H 0 1 N N N N N N 8.648  25.343 26.145 -4.451 1.966  0.098  H21 Y7M 54 
Y7M H22 H22 H 0 1 N N N N N N 9.778  25.240 24.753 -4.802 0.964  1.526  H22 Y7M 55 
Y7M H23 H23 H 0 1 N N N N N N 8.374  27.426 27.379 -7.250 1.190  1.084  H23 Y7M 56 
Y7M H24 H24 H 0 1 N N N N N N 10.104 27.406 27.864 -6.899 2.193  -0.344 H24 Y7M 57 
Y7M H25 H25 H 0 1 N N N N N N 9.041  29.689 28.112 -9.147 1.160  -0.512 H25 Y7M 58 
Y7M H26 H26 H 0 1 N N N N N N 8.575  30.937 25.996 -8.673 -0.851 0.858  H26 Y7M 59 
Y7M H27 H27 H 0 1 N N N N N N 7.478  29.528 26.194 -9.336 -1.303 -0.731 H27 Y7M 60 
Y7M H28 H28 H 0 1 N N N N N N 8.295  29.713 23.839 -7.391 -2.724 -0.141 H28 Y7M 61 
Y7M H29 H29 H 0 1 N N N N N N 7.882  27.433 24.716 -5.143 -1.691 0.027  H29 Y7M 62 
Y7M H30 H30 H 0 1 N N N N N N 9.328  27.418 23.650 -6.224 -1.078 1.301  H30 Y7M 63 
Y7M H31 H31 H 0 1 N N N N N N 10.757 29.292 23.415 -6.073 -2.325 -2.204 H31 Y7M 64 
Y7M H32 H32 H 0 1 N N N N N N 10.472 30.827 24.303 -7.817 -2.164 -2.519 H32 Y7M 65 
Y7M H33 H33 H 0 1 N N N N N N 12.386 29.555 25.331 -6.548 -0.314 -3.574 H33 Y7M 66 
Y7M H34 H34 H 0 1 N N N N N N 11.618 27.279 24.583 -5.381 1.332  -2.132 H34 Y7M 67 
Y7M H35 H35 H 0 1 N N N N N N 11.868 27.292 26.362 -4.650 -0.283 -1.978 H35 Y7M 68 
Y7M H36 H36 H 0 1 N N N N N N 11.497 29.436 27.681 -8.843 0.104  -2.735 H36 Y7M 69 
Y7M H37 H37 H 0 1 N N N N N N 10.858 30.894 26.847 -7.830 1.559  -2.575 H37 Y7M 70 
Y7M H38 H38 H 0 1 N N N N N N 11.958 24.039 28.496 -1.150 -0.930 -0.010 H38 Y7M 71 
Y7M H39 H39 H 0 1 N N N N N N 10.494 19.674 27.354 2.700  0.630  1.517  H39 Y7M 72 
Y7M H40 H40 H 0 1 N N N N N N 4.542  21.935 24.933 6.190  4.348  -1.876 H40 Y7M 73 
Y7M H41 H41 H 0 1 N N N N N N 7.799  16.806 29.781 2.321  -2.342 1.109  H41 Y7M 74 
Y7M O1  O6  O 0 1 N Y N N N N ?      ?      ?      5.945  -3.631 -0.041 O1  Y7M 75 
Y7M O2  O7  O 0 1 N Y N N N N ?      ?      ?      5.071  -2.308 -1.941 O2  Y7M 76 
Y7M O3  O8  O 0 1 N Y N N N N ?      ?      ?      6.609  -1.437 -0.431 O3  Y7M 77 
Y7M H20 H20 H 0 1 N Y N N N N ?      ?      ?      7.387  -1.674 -0.953 H20 Y7M 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y7M C30 C28 SING N N 1  
Y7M C30 C31 SING N N 2  
Y7M O18 C14 DOUB N N 3  
Y7M C29 C28 SING N N 4  
Y7M C29 C24 SING N N 5  
Y7M C28 C27 SING N N 6  
Y7M C14 N15 SING N N 7  
Y7M C14 C13 SING N N 8  
Y7M C31 C32 SING N N 9  
Y7M C31 C33 SING N N 10 
Y7M C32 C24 SING N N 11 
Y7M N15 C16 SING N N 12 
Y7M C24 C23 SING N N 13 
Y7M C24 C25 SING N N 14 
Y7M C23 O22 SING N N 15 
Y7M C27 C26 SING N N 16 
Y7M O01 C02 DOUB N N 17 
Y7M C13 C12 SING N N 18 
Y7M C13 C17 SING N N 19 
Y7M O22 C02 SING N N 20 
Y7M C02 N03 SING N N 21 
Y7M C33 C26 SING N N 22 
Y7M C16 C17 SING N N 23 
Y7M C12 C11 SING N N 24 
Y7M C25 C26 SING N N 25 
Y7M C07 C06 SING N N 26 
Y7M N03 C04 SING N N 27 
Y7M N10 C11 SING N N 28 
Y7M N10 C09 SING N N 29 
Y7M C04 C09 SING N N 30 
Y7M C04 C05 SING N N 31 
Y7M C11 C19 SING N N 32 
Y7M C06 C05 SING N N 33 
Y7M C06 C08 SING N N 34 
Y7M C09 O21 DOUB N N 35 
Y7M C19 O20 SING N N 36 
Y7M C04 H1  SING N N 37 
Y7M C05 H2  SING N N 38 
Y7M C05 H3  SING N N 39 
Y7M C06 H4  SING N N 40 
Y7M C07 H5  SING N N 41 
Y7M C07 H6  SING N N 42 
Y7M C07 H7  SING N N 43 
Y7M C08 H8  SING N N 44 
Y7M C08 H9  SING N N 45 
Y7M C08 H10 SING N N 46 
Y7M C11 H11 SING N N 47 
Y7M C12 H12 SING N N 48 
Y7M C12 H13 SING N N 49 
Y7M C13 H14 SING N N 50 
Y7M C16 H15 SING N N 51 
Y7M C16 H16 SING N N 52 
Y7M C17 H17 SING N N 53 
Y7M C17 H18 SING N N 54 
Y7M C19 H19 SING N N 55 
Y7M C19 S1  SING N N 56 
Y7M C23 H21 SING N N 57 
Y7M C23 H22 SING N N 58 
Y7M C25 H23 SING N N 59 
Y7M C25 H24 SING N N 60 
Y7M C26 H25 SING N N 61 
Y7M C27 H26 SING N N 62 
Y7M C27 H27 SING N N 63 
Y7M C28 H28 SING N N 64 
Y7M C29 H29 SING N N 65 
Y7M C29 H30 SING N N 66 
Y7M C30 H31 SING N N 67 
Y7M C30 H32 SING N N 68 
Y7M C31 H33 SING N N 69 
Y7M C32 H34 SING N N 70 
Y7M C32 H35 SING N N 71 
Y7M C33 H36 SING N N 72 
Y7M C33 H37 SING N N 73 
Y7M N03 H38 SING N N 74 
Y7M N10 H39 SING N N 75 
Y7M N15 H40 SING N N 76 
Y7M O20 H41 SING N N 77 
Y7M S1  O1  DOUB N N 78 
Y7M S1  O2  DOUB N N 79 
Y7M S1  O3  SING N N 80 
Y7M O3  H20 SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y7M InChI            InChI                1.03  "InChI=1S/C25H41N3O8S/c1-14(2)5-19(22(30)27-20(23(31)37(33,34)35)9-18-3-4-26-21(18)29)28-24(32)36-13-25-10-15-6-16(11-25)8-17(7-15)12-25/h14-20,23,31H,3-13H2,1-2H3,(H,26,29)(H,27,30)(H,28,32)(H,33,34,35)/t15-,16+,17-,18-,19-,20-,23-,25-/m0/s1" 
Y7M InChIKey         InChI                1.03  AFONNBAHWVWJGI-WSGOIKEKSA-N                                                                                                                                                                                                                         
Y7M SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                                       
Y7M SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                              
Y7M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3"                                                                                                                                                             
Y7M SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3"                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           Y7M 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(2~{S})-2-(1-adamantylmethoxycarbonylamino)-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y7M "Create component" 2021-02-09 RCSB 
Y7M "Modify name"      2021-02-09 RCSB 
Y7M "Initial release"  2021-02-17 RCSB 
Y7M "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y7M 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
