data_Z0M
#

_chem_comp.id                                   Z0M
_chem_comp.name                                 "N-[(5R,6R,7R,8S)-6,7-DIHYDROXY-5-(HYDROXYMETHYL)-2-(2-PHENYLETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDIN-8-YL]-3-SULFANYLPROPANAMIDE"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H25 N3 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "GLCNACSTATIN F"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-08-26
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       391.485
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z0M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2XPK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z0M  CAZ   CAZ   C  0  1  N  N  N  37.119  40.355  22.691   1.179   4.710   0.383  CAZ   Z0M   1  
Z0M  CAN   CAN   C  0  1  N  N  N  36.620  41.631  22.022   1.928   3.671  -0.453  CAN   Z0M   2  
Z0M  CAL   CAL   C  0  1  N  N  N  35.085  41.506  21.910   1.868   2.333   0.238  CAL   Z0M   3  
Z0M  OAM   OAM   O  0  1  N  N  N  34.527  40.435  22.194   1.284   2.222   1.295  OAM   Z0M   4  
Z0M  NAK   NAK   N  0  1  N  N  N  34.464  42.590  21.454   2.464   1.259  -0.319  NAK   Z0M   5  
Z0M  CAB   CAB   C  0  1  N  N  R  32.326  42.882  22.684   3.599  -0.902  -0.082  CAB   Z0M   6  
Z0M  OAG   OAG   O  0  1  N  N  N  32.225  44.277  22.932   4.797  -0.385   0.500  OAG   Z0M   7  
Z0M  CAA   CAA   C  0  1  N  N  R  30.917  42.312  22.733   3.381  -2.342   0.391  CAA   Z0M   8  
Z0M  OAH   OAH   O  0  1  N  N  N  30.376  42.536  24.030   4.577  -3.097   0.188  OAH   Z0M   9  
Z0M  CAF   CAF   C  0  1  N  N  R  30.970  40.813  22.388   2.236  -2.975  -0.407  CAF   Z0M  10  
Z0M  CAI   CAI   C  0  1  N  N  N  29.642  40.059  22.632   1.852  -4.316   0.222  CAI   Z0M  11  
Z0M  OAJ   OAJ   O  0  1  N  N  N  28.640  40.708  21.870   0.866  -4.958  -0.589  OAJ   Z0M  12  
Z0M  NAE   NAE   N  0  1  Y  N  N  31.383  40.713  20.963   1.083  -2.071  -0.376  NAE   Z0M  13  
Z0M  CAQ   CAQ   C  0  1  Y  N  N  31.010  39.911  19.968  -0.215  -2.364  -0.670  CAQ   Z0M  14  
Z0M  CAD   CAD   C  0  1  Y  N  N  32.348  41.592  20.438   1.137  -0.761  -0.040  CAD   Z0M  15  
Z0M  NAO   NAO   N  0  1  Y  N  N  32.497  41.272  19.151  -0.062  -0.262  -0.117  NAO   Z0M  16  
Z0M  CAP   CAP   C  0  1  Y  N  N  31.677  40.257  18.854  -0.917  -1.224  -0.502  CAP   Z0M  17  
Z0M  CAR   CAR   C  0  1  N  N  N  31.553  39.540  17.488  -2.400  -1.059  -0.712  CAR   Z0M  18  
Z0M  CAS   CAS   C  0  1  N  N  N  31.493  40.523  16.319  -3.034  -0.488   0.558  CAS   Z0M  19  
Z0M  CAT   CAT   C  0  1  Y  N  N  30.079  41.091  16.212  -4.517  -0.323   0.349  CAT   Z0M  20  
Z0M  CAU   CAU   C  0  1  Y  N  N  29.776  42.310  16.835  -5.379  -1.358   0.661  CAU   Z0M  21  
Z0M  CAV   CAV   C  0  1  Y  N  N  28.491  42.830  16.736  -6.739  -1.206   0.469  CAV   Z0M  22  
Z0M  CAW   CAW   C  0  1  Y  N  N  27.515  42.126  16.021  -7.238  -0.019  -0.035  CAW   Z0M  23  
Z0M  CAC   CAC   C  0  1  N  N  S  32.995  42.710  21.304   2.405  -0.041   0.353  CAC   Z0M  24  
Z0M  CAX   CAX   C  0  1  Y  N  N  27.805  40.913  15.408  -6.376   1.016  -0.346  CAX   Z0M  25  
Z0M  CAY   CAY   C  0  1  Y  N  N  29.090  40.397  15.511  -5.016   0.866  -0.150  CAY   Z0M  26  
Z0M  SAZ   SAZ   S  0  1  N  N  N  38.899  40.345  23.028   1.251   6.321  -0.449  SAZ   Z0M  27  
Z0M  HAZ1  HAZ1  H  0  0  N  N  N  36.591  40.246  23.650   0.139   4.405   0.494  HAZ1  Z0M  28  
Z0M  HAZ2  HAZ2  H  0  0  N  N  N  36.921  39.529  21.992   1.643   4.788   1.366  HAZ2  Z0M  29  
Z0M  HAN1  HAN1  H  0  0  N  N  N  36.889  42.510  22.626   1.465   3.593  -1.437  HAN1  Z0M  30  
Z0M  HAN2  HAN2  H  0  0  N  N  N  37.077  41.760  21.030   2.969   3.975  -0.565  HAN2  Z0M  31  
Z0M  HAZ   HAZ   H  0  1  N  N  N  39.553  40.343  21.905   0.564   7.123   0.384  HAZ   Z0M  32  
Z0M  HAK   HAK   H  0  1  N  N  N  35.026  43.376  21.195   2.931   1.348  -1.164  HAK   Z0M  33  
Z0M  HAC   HAC   H  0  1  N  N  N  32.806  43.624  20.722   2.429   0.102   1.433  HAC   Z0M  34  
Z0M  HAB   HAB   H  0  1  N  N  N  32.935  42.346  23.427   3.684  -0.885  -1.168  HAB   Z0M  35  
Z0M  HAG   HAG   H  0  1  N  N  N  32.202  44.432  23.869   5.593  -0.884   0.270  HAG   Z0M  36  
Z0M  HAA   HAA   H  0  1  N  N  N  30.265  42.808  21.998   3.128  -2.342   1.452  HAA   Z0M  37  
Z0M  HAH   HAH   H  0  1  N  N  N  31.082  42.586  24.664   5.345  -2.753   0.664  HAH   Z0M  38  
Z0M  HAF   HAF   H  0  1  N  N  N  31.689  40.323  23.061   2.552  -3.132  -1.438  HAF   Z0M  39  
Z0M  HAI1  HAI1  H  0  0  N  N  N  29.738  39.010  22.316   2.735  -4.951   0.291  HAI1  Z0M  40  
Z0M  HAI2  HAI2  H  0  0  N  N  N  29.382  40.068  23.701   1.448  -4.147   1.220  HAI2  Z0M  41  
Z0M  HAJ   HAJ   H  0  1  N  N  N  27.874  40.853  22.412   0.575  -5.816  -0.249  HAJ   Z0M  42  
Z0M  HAQ   HAQ   H  0  1  N  N  N  30.288  39.111  20.044  -0.607  -3.323  -0.977  HAQ   Z0M  43  
Z0M  HAR1  HAR1  H  0  0  N  N  N  32.430  38.890  17.353  -2.576  -0.376  -1.543  HAR1  Z0M  44  
Z0M  HAR2  HAR2  H  0  0  N  N  N  30.616  38.964  17.493  -2.845  -2.028  -0.937  HAR2  Z0M  45  
Z0M  HAS1  HAS1  H  0  0  N  N  N  32.207  41.342  16.490  -2.858  -1.171   1.390  HAS1  Z0M  46  
Z0M  HAS2  HAS2  H  0  0  N  N  N  31.754  40.003  15.385  -2.588   0.481   0.783  HAS2  Z0M  47  
Z0M  HAU   HAU   H  0  1  N  N  N  30.536  42.841  17.388  -4.989  -2.285   1.055  HAU   Z0M  48  
Z0M  HAY   HAY   H  0  1  N  N  N  29.327  39.452  15.045  -4.343   1.676  -0.389  HAY   Z0M  49  
Z0M  HAV   HAV   H  0  1  N  N  N  28.247  43.771  17.207  -7.412  -2.015   0.712  HAV   Z0M  50  
Z0M  HAW   HAW   H  0  1  N  N  N  26.518  42.533  15.944  -8.301   0.099  -0.185  HAW   Z0M  51  
Z0M  HAX   HAX   H  0  1  N  N  N  27.042  40.380  14.860  -6.766   1.943  -0.740  HAX   Z0M  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z0M  CAZ  CAN   SING  N  N   1  
Z0M  CAZ  SAZ   SING  N  N   2  
Z0M  CAN  CAL   SING  N  N   3  
Z0M  CAL  OAM   DOUB  N  N   4  
Z0M  CAL  NAK   SING  N  N   5  
Z0M  NAK  CAC   SING  N  N   6  
Z0M  CAB  OAG   SING  N  N   7  
Z0M  CAB  CAA   SING  N  N   8  
Z0M  CAB  CAC   SING  N  N   9  
Z0M  CAA  OAH   SING  N  N  10  
Z0M  CAA  CAF   SING  N  N  11  
Z0M  CAF  CAI   SING  N  N  12  
Z0M  CAF  NAE   SING  N  N  13  
Z0M  CAI  OAJ   SING  N  N  14  
Z0M  NAE  CAQ   SING  Y  N  15  
Z0M  NAE  CAD   SING  Y  N  16  
Z0M  CAQ  CAP   DOUB  Y  N  17  
Z0M  CAD  NAO   DOUB  Y  N  18  
Z0M  CAD  CAC   SING  N  N  19  
Z0M  NAO  CAP   SING  Y  N  20  
Z0M  CAP  CAR   SING  N  N  21  
Z0M  CAR  CAS   SING  N  N  22  
Z0M  CAS  CAT   SING  N  N  23  
Z0M  CAT  CAU   SING  Y  N  24  
Z0M  CAT  CAY   DOUB  Y  N  25  
Z0M  CAU  CAV   DOUB  Y  N  26  
Z0M  CAV  CAW   SING  Y  N  27  
Z0M  CAW  CAX   DOUB  Y  N  28  
Z0M  CAX  CAY   SING  Y  N  29  
Z0M  CAZ  HAZ1  SING  N  N  30  
Z0M  CAZ  HAZ2  SING  N  N  31  
Z0M  CAN  HAN1  SING  N  N  32  
Z0M  CAN  HAN2  SING  N  N  33  
Z0M  SAZ  HAZ   SING  N  N  34  
Z0M  NAK  HAK   SING  N  N  35  
Z0M  CAC  HAC   SING  N  N  36  
Z0M  CAB  HAB   SING  N  N  37  
Z0M  OAG  HAG   SING  N  N  38  
Z0M  CAA  HAA   SING  N  N  39  
Z0M  OAH  HAH   SING  N  N  40  
Z0M  CAF  HAF   SING  N  N  41  
Z0M  CAI  HAI1  SING  N  N  42  
Z0M  CAI  HAI2  SING  N  N  43  
Z0M  OAJ  HAJ   SING  N  N  44  
Z0M  CAQ  HAQ   SING  N  N  45  
Z0M  CAR  HAR1  SING  N  N  46  
Z0M  CAR  HAR2  SING  N  N  47  
Z0M  CAS  HAS1  SING  N  N  48  
Z0M  CAS  HAS2  SING  N  N  49  
Z0M  CAU  HAU   SING  N  N  50  
Z0M  CAY  HAY   SING  N  N  51  
Z0M  CAV  HAV   SING  N  N  52  
Z0M  CAW  HAW   SING  N  N  53  
Z0M  CAX  HAX   SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z0M  SMILES            ACDLabs               10.04  "O=C(NC2c1nc(cn1C(C(O)C2O)CO)CCc3ccccc3)CCS"  
Z0M  SMILES_CANONICAL  CACTVS                3.352  "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](NC(=O)CCS)c2nc(CCc3ccccc3)cn12"  
Z0M  SMILES            CACTVS                3.352  "OC[CH]1[CH](O)[CH](O)[CH](NC(=O)CCS)c2nc(CCc3ccccc3)cn12"  
Z0M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "c1ccc(cc1)CCc2cn3c(n2)[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)NC(=O)CCS"  
Z0M  SMILES            "OpenEye OEToolkits"  1.6.1  "c1ccc(cc1)CCc2cn3c(n2)C(C(C(C3CO)O)O)NC(=O)CCS"  
Z0M  InChI             InChI                 1.03   "InChI=1S/C19H25N3O4S/c23-11-14-17(25)18(26)16(21-15(24)8-9-27)19-20-13(10-22(14)19)7-6-12-4-2-1-3-5-12/h1-5,10,14,16-18,23,25-27H,6-9,11H2,(H,21,24)/t14-,16-,17-,18-/m1/s1"  
Z0M  InChIKey          InChI                 1.03   ZEEDRHPJCAOZKV-VDHUWJSZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z0M  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[(5R,6R,7R,8S)-6,7-dihydroxy-5-(hydroxymethyl)-2-(2-phenylethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-8-yl]-3-sulfanylpropanamide"  
Z0M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "N-[(5R,6R,7R,8S)-6,7-dihydroxy-5-(hydroxymethyl)-2-phenethyl-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-8-yl]-3-sulfanyl-propanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z0M  "Create component"      2010-08-26  EBI   
Z0M  "Modify aromatic_flag"  2011-06-04  RCSB  
Z0M  "Modify descriptor"     2011-06-04  RCSB  
Z0M  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Z0M
_pdbx_chem_comp_synonyms.name        "GLCNACSTATIN F"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
