data_0DN
# 
_chem_comp.id                                    0DN 
_chem_comp.name                                  "5'-deoxy-5'-fluorothymidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 F N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-12-14 
_chem_comp.pdbx_modified_date                    2012-01-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        244.220 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0DN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3UXM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0DN O4  O4  O 0 1 N N N 7.371  2.297  16.431 0.146  -1.004 -1.442 O4  0DN 1  
0DN C6  C6  C 0 1 N N N 6.733  1.369  16.988 1.069  -0.564 -0.784 C6  0DN 2  
0DN N2  N2  N 0 1 N N N 5.954  0.523  16.280 2.326  -0.959 -1.057 N2  0DN 3  
0DN C7  C7  C 0 1 N N N 5.306  -0.500 16.892 3.360  -0.480 -0.336 C7  0DN 4  
0DN O3  O3  O 0 1 N N N 4.590  -1.291 16.243 4.498  -0.836 -0.583 O3  0DN 5  
0DN C8  C8  C 0 1 N N N 5.423  -0.669 18.366 3.111  0.441  0.709  C8  0DN 6  
0DN C10 C10 C 0 1 N N N 4.737  -1.781 19.117 4.249  0.992  1.529  C10 0DN 7  
0DN C9  C9  C 0 1 N N N 6.223  0.219  19.051 1.840  0.820  0.961  C9  0DN 8  
0DN N1  N1  N 0 1 N N N 6.842  1.232  18.398 0.819  0.315  0.204  N1  0DN 9  
0DN C4  C4  C 0 1 N N R 7.709  2.165  19.119 -0.560 0.730  0.474  C4  0DN 10 
0DN C3  C3  C 0 1 N N N 7.089  3.057  20.214 -1.158 1.444  -0.759 C3  0DN 11 
0DN C2  C2  C 0 1 N N S 8.215  3.180  21.233 -2.631 0.979  -0.785 C2  0DN 12 
0DN O2  O2  O 0 1 N N N 8.996  4.346  20.905 -3.511 2.096  -0.646 O2  0DN 13 
0DN O1  O1  O 0 1 N N N 8.700  1.381  19.747 -1.403 -0.426 0.675  O1  0DN 14 
0DN C1  C1  C 0 1 N N S 9.088  1.945  20.991 -2.749 0.039  0.436  C1  0DN 15 
0DN C5  C5  C 0 1 N N N 9.031  0.858  22.066 -3.670 -1.140 0.113  C5  0DN 16 
0DN F1  F1  F 0 1 N N N 7.727  0.567  22.369 -3.796 -1.955 1.243  F1  0DN 17 
0DN H1  H1  H 0 1 N N N 5.854  0.652  15.293 2.489  -1.590 -1.775 H1  0DN 18 
0DN H2  H2  H 0 1 N N N 4.971  -1.699 20.189 5.189  0.570  1.176  H2  0DN 19 
0DN H3  H3  H 0 1 N N N 3.649  -1.704 18.972 4.277  2.077  1.429  H3  0DN 20 
0DN H4  H4  H 0 1 N N N 5.090  -2.751 18.738 4.103  0.728  2.577  H4  0DN 21 
0DN H5  H5  H 0 1 N N N 6.358  0.107  20.117 1.630  1.522  1.755  H5  0DN 22 
0DN H6  H6  H 0 1 N N N 8.188  2.830  18.385 -0.595 1.382  1.346  H6  0DN 23 
0DN H7  H7  H 0 1 N N N 6.811  4.042  19.811 -1.101 2.526  -0.639 H7  0DN 24 
0DN H8  H8  H 0 1 N N N 6.204  2.579  20.659 -0.643 1.132  -1.668 H8  0DN 25 
0DN H9  H9  H 0 1 N N N 7.827  3.202  22.262 -2.845 0.437  -1.706 H9  0DN 26 
0DN H10 H10 H 0 1 N N N 9.705  4.439  21.531 -3.434 2.748  -1.357 H10 0DN 27 
0DN H11 H11 H 0 1 N N N 10.131 2.286  20.919 -3.122 0.586  1.302  H11 0DN 28 
0DN H12 H12 H 0 1 N N N 9.530  -0.049 21.694 -4.652 -0.765 -0.177 H12 0DN 29 
0DN H13 H13 H 0 1 N N N 9.545  1.214  22.971 -3.245 -1.718 -0.707 H13 0DN 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0DN O3  C7  DOUB N N 1  
0DN N2  C7  SING N N 2  
0DN N2  C6  SING N N 3  
0DN O4  C6  DOUB N N 4  
0DN C7  C8  SING N N 5  
0DN C6  N1  SING N N 6  
0DN C8  C9  DOUB N N 7  
0DN C8  C10 SING N N 8  
0DN N1  C9  SING N N 9  
0DN N1  C4  SING N N 10 
0DN C4  O1  SING N N 11 
0DN C4  C3  SING N N 12 
0DN O1  C1  SING N N 13 
0DN C3  C2  SING N N 14 
0DN O2  C2  SING N N 15 
0DN C1  C2  SING N N 16 
0DN C1  C5  SING N N 17 
0DN C5  F1  SING N N 18 
0DN N2  H1  SING N N 19 
0DN C10 H2  SING N N 20 
0DN C10 H3  SING N N 21 
0DN C10 H4  SING N N 22 
0DN C9  H5  SING N N 23 
0DN C4  H6  SING N N 24 
0DN C3  H7  SING N N 25 
0DN C3  H8  SING N N 26 
0DN C2  H9  SING N N 27 
0DN O2  H10 SING N N 28 
0DN C1  H11 SING N N 29 
0DN C5  H12 SING N N 30 
0DN C5  H13 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0DN SMILES           ACDLabs              12.01 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2)CF"                                                                                      
0DN InChI            InChI                1.03  "InChI=1S/C10H13FN2O4/c1-5-4-13(10(16)12-9(5)15)8-2-6(14)7(3-11)17-8/h4,6-8,14H,2-3H2,1H3,(H,12,15,16)/t6-,7+,8+/m0/s1" 
0DN InChIKey         InChI                1.03  MYWVPKQWFIVGJZ-XLPZGREQSA-N                                                                                             
0DN SMILES_CANONICAL CACTVS               3.370 "CC1=CN([C@H]2C[C@H](O)[C@@H](CF)O2)C(=O)NC1=O"                                                                         
0DN SMILES           CACTVS               3.370 "CC1=CN([CH]2C[CH](O)[CH](CF)O2)C(=O)NC1=O"                                                                             
0DN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CF)O"                                                                         
0DN SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CF)O"                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0DN "SYSTEMATIC NAME" ACDLabs              12.01 "5'-deoxy-5'-fluorothymidine"                                                             
0DN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2R,4S,5S)-5-(fluoranylmethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0DN "Create component" 2011-12-14 RCSB 
# 
