data_LCN
#

_chem_comp.id                                   LCN
_chem_comp.name                                 "1,5-anhydro-D-arabino-hex-1-enitol"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-05-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       162.141
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LCN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3S28
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LCN  C1   C1   C  0  1  N  N  N  -136.994  -122.080  55.582   0.622   1.681   0.166  C1   LCN   1  
LCN  C2   C2   C  0  1  N  N  N  -137.469  -121.929  56.867   1.555   0.805  -0.112  C2   LCN   2  
LCN  O2   O2   O  0  1  N  N  N  -137.803  -123.047  57.610   2.843   1.230  -0.213  O2   LCN   3  
LCN  C3   C3   C  0  1  N  N  S  -137.734  -120.537  57.397   1.256  -0.654  -0.324  C3   LCN   4  
LCN  O3   O3   O  0  1  N  N  N  -137.580  -120.527  58.778   2.246  -1.444   0.337  O3   LCN   5  
LCN  C4   C4   C  0  1  N  N  S  -136.817  -119.545  56.746  -0.126  -0.980   0.253  C4   LCN   6  
LCN  O4   O4   O  0  1  N  N  N  -137.182  -118.283  57.135  -0.551  -2.264  -0.209  O4   LCN   7  
LCN  C5   C5   C  0  1  N  N  R  -136.904  -119.665  55.248  -1.112   0.095  -0.227  C5   LCN   8  
LCN  O5   O5   O  0  1  N  N  N  -136.633  -120.963  54.844  -0.686   1.356   0.301  O5   LCN   9  
LCN  C6   C6   C  0  1  N  N  N  -135.961  -118.696  54.571  -2.517  -0.229   0.282  C6   LCN  10  
LCN  O6   O6   O  0  1  N  N  N  -134.675  -118.843  55.067  -3.449   0.707  -0.262  O6   LCN  11  
LCN  H1   H1   H  0  1  N  N  N  -136.903  -123.066  55.151   0.910   2.714   0.298  H1   LCN  12  
LCN  HO2  HO2  H  0  1  N  Y  N  -138.112  -122.778  58.467   2.957   2.179  -0.065  HO2  LCN  13  
LCN  H3   H3   H  0  1  N  N  N  -138.769  -120.267  57.139   1.266  -0.876  -1.391  H3   LCN  14  
LCN  HO3  HO3  H  0  1  N  Y  N  -138.170  -121.162  59.167   3.147  -1.290   0.022  HO3  LCN  15  
LCN  H4   H4   H  0  1  N  N  N  -135.784  -119.762  57.057  -0.080  -0.978   1.342  H4   LCN  16  
LCN  HO4  HO4  H  0  1  N  Y  N  -137.125  -118.214  58.081   0.039  -2.988   0.043  HO4  LCN  17  
LCN  H5   H5   H  0  1  N  N  N  -137.928  -119.397  54.949  -1.115   0.130  -1.317  H5   LCN  18  
LCN  H61  H61  H  0  1  N  N  N  -136.305  -117.668  54.756  -2.793  -1.238  -0.027  H61  LCN  19  
LCN  H62  H62  H  0  1  N  N  N  -135.956  -118.892  53.489  -2.533  -0.166   1.371  H62  LCN  20  
LCN  HO6  HO6  H  0  1  N  Y  N  -134.095  -118.228  54.633  -4.363   0.562   0.019  HO6  LCN  21  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LCN  C6  O6   SING  N  N   1  
LCN  C6  C5   SING  N  N   2  
LCN  O5  C5   SING  N  N   3  
LCN  O5  C1   SING  N  N   4  
LCN  C5  C4   SING  N  N   5  
LCN  C1  C2   DOUB  N  N   6  
LCN  C4  O4   SING  N  N   7  
LCN  C4  C3   SING  N  N   8  
LCN  C2  C3   SING  N  N   9  
LCN  C2  O2   SING  N  N  10  
LCN  C3  O3   SING  N  N  11  
LCN  C1  H1   SING  N  N  12  
LCN  O2  HO2  SING  N  N  13  
LCN  C3  H3   SING  N  N  14  
LCN  O3  HO3  SING  N  N  15  
LCN  C4  H4   SING  N  N  16  
LCN  O4  HO4  SING  N  N  17  
LCN  C5  H5   SING  N  N  18  
LCN  C6  H61  SING  N  N  19  
LCN  C6  H62  SING  N  N  20  
LCN  O6  HO6  SING  N  N  21  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LCN  InChI             InChI                 1.03   "InChI=1S/C6H10O5/c7-1-4-6(10)5(9)3(8)2-11-4/h2,4-10H,1H2/t4-,5-,6-/m1/s1"  
LCN  InChIKey          InChI                 1.03   CXKKSSKKIOZUNR-HSUXUTPPSA-N  
LCN  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1OC=C(O)[C@@H](O)[C@@H]1O"  
LCN  SMILES            CACTVS                3.385  "OC[CH]1OC=C(O)[CH](O)[CH]1O"  
LCN  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1=C([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
LCN  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=C(C(C(C(O1)CO)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          LCN
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S})-2-(hydroxymethyl)-3,4-dihydro-2~{H}-pyran-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
LCN  "CARBOHYDRATE ISOMER"                  D             PDB  ?  
LCN  "CARBOHYDRATE RING"                    dihydropyran  PDB  ?  
LCN  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose        PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LCN  "Create component"    2011-05-26  RCSB  
LCN  "Modify descriptor"   2011-06-04  RCSB  
LCN  "Other modification"  2020-04-11  RCSB  
LCN  "Other modification"  2020-07-03  RCSB  
##
