data_EBO
#

_chem_comp.id                                   EBO
_chem_comp.name                                 "(2~{S})-2-azanyl-4-[(3~{S})-3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonomethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-4-oxidanylidene-butyl]sulfanyl-butanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H24 N3 O8 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-12-06
_chem_comp.pdbx_modified_date                   2020-12-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       449.416
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EBO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6LGO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EBO  O6   O1   O  0  1  N  N  N  -26.675  58.167  -17.536   0.883  -4.968   0.536  O6   EBO   1  
EBO  C15  C1   C  0  1  N  N  N  -25.722  57.628  -18.180   1.276  -3.838  -0.073  C15  EBO   2  
EBO  O5   O2   O  0  1  N  N  N  -24.706  58.211  -18.566   2.196  -3.861  -0.855  O5   EBO   3  
EBO  C8   C2   C  0  1  N  N  S  -25.694  56.195  -18.564   0.569  -2.539   0.221  C8   EBO   4  
EBO  C9   C3   C  0  1  N  N  N  -25.661  55.891  -20.110  -0.909  -2.667  -0.154  C9   EBO   5  
EBO  C10  C4   C  0  1  N  N  N  -26.158  57.014  -21.023  -1.651  -1.394   0.258  C10  EBO   6  
EBO  S    S1   S  0  1  N  N  N  -25.975  56.424  -22.636  -3.404  -1.546  -0.187  S    EBO   7  
EBO  C11  C5   C  0  1  N  N  N  -27.343  57.178  -23.369  -4.104   0.032   0.372  C11  EBO   8  
EBO  C12  C6   C  0  1  N  N  N  -27.157  57.240  -24.849  -5.602   0.062   0.063  C12  EBO   9  
EBO  C13  C7   C  0  1  N  N  S  -27.319  55.944  -25.611  -6.193   1.392   0.534  C13  EBO  10  
EBO  C14  C8   C  0  1  N  N  N  -28.632  55.223  -25.412  -7.640   1.474   0.121  C14  EBO  11  
EBO  O4   O3   O  0  1  N  N  N  -29.541  55.288  -26.227  -8.512   1.231   0.923  O4   EBO  12  
EBO  O3   O4   O  0  1  N  N  N  -28.833  54.478  -24.450  -7.961   1.815  -1.137  O3   EBO  13  
EBO  N2   N1   N  0  1  N  N  N  -27.124  56.407  -27.000  -6.096   1.480   1.997  N2   EBO  14  
EBO  N1   N2   N  0  1  N  N  N  -26.644  55.451  -17.696   1.180  -1.463  -0.562  N1   EBO  15  
EBO  C7   C9   C  0  1  N  N  N  -26.823  54.221  -17.751   1.710  -0.447   0.038  C7   EBO  16  
EBO  C3   C10  C  0  1  Y  N  N  -27.648  53.523  -16.776   2.326   0.638  -0.751  C3   EBO  17  
EBO  C2   C11  C  0  1  Y  N  N  -28.046  54.247  -15.569   2.348   0.587  -2.155  C2   EBO  18  
EBO  O7   O5   O  0  1  N  N  N  -27.746  55.550  -15.300   1.801  -0.464  -2.817  O7   EBO  19  
EBO  C4   C12  C  0  1  Y  N  N  -27.993  52.080  -16.926   2.900   1.749  -0.123  C4   EBO  20  
EBO  C6   C13  C  0  1  N  N  N  -27.630  51.039  -17.998   2.901   1.861   1.380  C6   EBO  21  
EBO  P    P1   P  0  1  N  N  N  -26.074  50.510  -18.929   4.414   1.092   2.045  P    EBO  22  
EBO  O2   O6   O  0  1  N  N  N  -24.973  49.686  -18.449   4.394  -0.488   1.736  O2   EBO  23  
EBO  O1   O7   O  0  1  N  N  N  -26.677  49.482  -19.924   5.601   1.704   1.407  O1   EBO  24  
EBO  O    O8   O  0  1  N  N  N  -25.549  51.613  -19.861   4.480   1.326   3.637  O    EBO  25  
EBO  C5   C14  C  0  1  Y  N  N  -28.856  51.650  -15.853   3.464   2.740  -0.899  C5   EBO  26  
EBO  N    N3   N  0  1  Y  N  N  -29.258  52.315  -14.742   3.469   2.654  -2.215  N    EBO  27  
EBO  C1   C15  C  0  1  Y  N  N  -28.874  53.585  -14.578   2.938   1.632  -2.853  C1   EBO  28  
EBO  C    C16  C  0  1  N  N  N  -29.195  54.445  -13.405   2.972   1.595  -4.359  C    EBO  29  
EBO  H1   H1   H  0  1  N  N  N  -26.484  59.087  -17.398   1.367  -5.776   0.316  H1   EBO  30  
EBO  H2   H2   H  0  1  N  N  N  -24.706  55.852  -18.224   0.656  -2.310   1.283  H2   EBO  31  
EBO  H3   H3   H  0  1  N  N  N  -26.288  55.006  -20.293  -0.999  -2.807  -1.231  H3   EBO  32  
EBO  H4   H4   H  0  1  N  N  N  -24.620  55.667  -20.387  -1.342  -3.524   0.362  H4   EBO  33  
EBO  H5   H5   H  0  1  N  N  N  -25.555  57.922  -20.876  -1.561  -1.254   1.335  H5   EBO  34  
EBO  H6   H6   H  0  1  N  N  N  -27.215  57.238  -20.815  -1.218  -0.538  -0.258  H6   EBO  35  
EBO  H7   H7   H  0  1  N  N  N  -27.453  58.198  -22.972  -3.952   0.137   1.446  H7   EBO  36  
EBO  H8   H8   H  0  1  N  N  N  -28.247  56.595  -23.139  -3.610   0.853  -0.147  H8   EBO  37  
EBO  H9   H9   H  0  1  N  N  N  -26.141  57.614  -25.041  -5.754  -0.043  -1.011  H9   EBO  38  
EBO  H10  H10  H  0  1  N  N  N  -27.892  57.954  -25.247  -6.097  -0.759   0.582  H10  EBO  39  
EBO  H11  H11  H  0  1  N  N  N  -26.497  55.266  -25.336  -5.640   2.216   0.083  H11  EBO  40  
EBO  H12  H12  H  0  1  N  N  N  -29.692  54.081  -24.531  -8.903   1.854  -1.354  H12  EBO  41  
EBO  H13  H13  H  0  1  N  N  N  -26.244  56.875  -27.075  -6.421   2.377   2.328  H13  EBO  42  
EBO  H14  H14  H  0  1  N  N  N  -27.137  55.621  -27.618  -6.601   0.727   2.440  H14  EBO  43  
EBO  H16  H16  H  0  1  N  N  N  -26.354  53.656  -18.543   1.702  -0.392   1.117  H16  EBO  44  
EBO  H17  H17  H  0  1  N  N  N  -28.113  55.793  -14.458   0.867  -0.347  -3.036  H17  EBO  45  
EBO  H18  H18  H  0  1  N  N  N  -28.317  51.297  -18.817   2.872   2.912   1.666  H18  EBO  46  
EBO  H19  H19  H  0  1  N  N  N  -27.954  50.098  -17.530   2.026   1.350   1.783  H19  EBO  47  
EBO  H20  H20  H  0  1  N  N  N  -24.995  48.842  -18.885   3.641  -0.955   2.125  H20  EBO  48  
EBO  H21  H21  H  0  1  N  N  N  -25.728  51.377  -20.764   5.261   0.942   4.059  H21  EBO  49  
EBO  H22  H22  H  0  1  N  N  N  -29.240  50.645  -15.949   3.909   3.601  -0.421  H22  EBO  50  
EBO  H23  H23  H  0  1  N  N  N  -29.801  53.874  -12.686   2.077   2.075  -4.754  H23  EBO  51  
EBO  H24  H24  H  0  1  N  N  N  -28.262  54.769  -12.922   3.856   2.124  -4.715  H24  EBO  52  
EBO  H25  H25  H  0  1  N  N  N  -29.759  55.327  -13.741   3.007   0.559  -4.696  H25  EBO  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EBO  N2   C13  SING  N  N   1  
EBO  O4   C14  DOUB  N  N   2  
EBO  C13  C14  SING  N  N   3  
EBO  C13  C12  SING  N  N   4  
EBO  C14  O3   SING  N  N   5  
EBO  C12  C11  SING  N  N   6  
EBO  C11  S    SING  N  N   7  
EBO  S    C10  SING  N  N   8  
EBO  C10  C9   SING  N  N   9  
EBO  C9   C8   SING  N  N  10  
EBO  O1   P    DOUB  N  N  11  
EBO  O    P    SING  N  N  12  
EBO  P    O2   SING  N  N  13  
EBO  P    C6   SING  N  N  14  
EBO  O5   C15  DOUB  N  N  15  
EBO  C8   C15  SING  N  N  16  
EBO  C8   N1   SING  N  N  17  
EBO  C15  O6   SING  N  N  18  
EBO  C6   C4   SING  N  N  19  
EBO  C7   N1   DOUB  N  N  20  
EBO  C7   C3   SING  N  N  21  
EBO  C4   C3   DOUB  Y  N  22  
EBO  C4   C5   SING  Y  N  23  
EBO  C3   C2   SING  Y  N  24  
EBO  C5   N    DOUB  Y  N  25  
EBO  C2   O7   SING  N  N  26  
EBO  C2   C1   DOUB  Y  N  27  
EBO  N    C1   SING  Y  N  28  
EBO  C1   C    SING  N  N  29  
EBO  O6   H1   SING  N  N  30  
EBO  C8   H2   SING  N  N  31  
EBO  C9   H3   SING  N  N  32  
EBO  C9   H4   SING  N  N  33  
EBO  C10  H5   SING  N  N  34  
EBO  C10  H6   SING  N  N  35  
EBO  C11  H7   SING  N  N  36  
EBO  C11  H8   SING  N  N  37  
EBO  C12  H9   SING  N  N  38  
EBO  C12  H10  SING  N  N  39  
EBO  C13  H11  SING  N  N  40  
EBO  O3   H12  SING  N  N  41  
EBO  N2   H13  SING  N  N  42  
EBO  N2   H14  SING  N  N  43  
EBO  C7   H16  SING  N  N  44  
EBO  O7   H17  SING  N  N  45  
EBO  C6   H18  SING  N  N  46  
EBO  C6   H19  SING  N  N  47  
EBO  O2   H20  SING  N  N  48  
EBO  O    H21  SING  N  N  49  
EBO  C5   H22  SING  N  N  50  
EBO  C    H23  SING  N  N  51  
EBO  C    H24  SING  N  N  52  
EBO  C    H25  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EBO  InChI             InChI                 1.03   "InChI=1S/C16H24N3O8PS/c1-9-14(20)11(10(6-18-9)8-28(25,26)27)7-19-13(16(23)24)3-5-29-4-2-12(17)15(21)22/h6-7,12-13,20H,2-5,8,17H2,1H3,(H,21,22)(H,23,24)(H2,25,26,27)/b19-7+/t12-,13-/m0/s1"  
EBO  InChIKey          InChI                 1.03   QGHPUHOZHNBFHZ-VNBISDOUSA-N  
EBO  SMILES_CANONICAL  CACTVS                3.385  "Cc1ncc(C[P](O)(O)=O)c(C=N[C@@H](CCSCC[C@H](N)C(O)=O)C(O)=O)c1O"  
EBO  SMILES            CACTVS                3.385  "Cc1ncc(C[P](O)(O)=O)c(C=N[CH](CCSCC[CH](N)C(O)=O)C(O)=O)c1O"  
EBO  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)CP(=O)(O)O)/C=N/[C@@H](CCSCC[C@@H](C(=O)O)N)C(=O)O)O"  
EBO  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)CP(=O)(O)O)C=NC(CCSCCC(C(=O)O)N)C(=O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          EBO
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-azanyl-4-[(3~{S})-3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonomethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-4-oxidanylidene-butyl]sulfanyl-butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EBO  "Create component"  2019-12-06  PDBJ  
EBO  "Initial release"   2020-12-09  RCSB  
##
