data_F7O
#

_chem_comp.id                                   F7O
_chem_comp.name                                 "[(2R)-2-[2-(6-aminopurin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate"
_chem_comp.type                                 "DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H15 N6 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-07
_chem_comp.pdbx_modified_date                   2020-11-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       346.236
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    F7O
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BPG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F7O  OP1    O1   O  0  1  N  N  N  -0.433  33.354  28.793  -6.277  -0.336   0.701  OP1    F7O   1  
F7O  P      P1   P  0  1  N  N  N  -1.801  32.963  28.330  -5.255   0.193  -0.425  P      F7O   2  
F7O  OP2    O2   O  0  1  N  N  N  -2.899  33.677  27.626  -5.425   1.654  -0.597  OP2    F7O   3  
F7O  "O3'"  O3   O  0  1  N  N  N  -1.485  31.507  27.730  -3.743  -0.121   0.031  "O3'"  F7O   4  
F7O  "C3'"  C1   C  0  1  N  N  N  -2.385  30.637  27.051  -3.135   0.479   1.177  "C3'"  F7O   5  
F7O  "C2'"  C2   C  0  1  N  N  R  -1.671  29.291  26.745  -1.702  -0.036   1.322  "C2'"  F7O   6  
F7O  "C1'"  C3   C  0  1  N  N  N  -0.538  29.579  25.762  -1.712  -1.566   1.367  "C1'"  F7O   7  
F7O  "O1'"  O4   O  0  1  N  N  N  -1.181  30.233  24.653  -2.385  -2.072   0.213  "O1'"  F7O   8  
F7O  "N2'"  N1   N  0  1  N  N  N  -1.178  28.634  27.984  -0.903   0.413   0.179  "N2'"  F7O   9  
F7O  C2A    C4   C  0  1  N  N  N  -1.930  27.732  28.612   0.433   0.537   0.298  C2A    F7O  10  
F7O  O2A    O5   O  0  1  N  N  N  -3.061  27.393  28.270   0.975   0.276   1.352  O2A    F7O  11  
F7O  C2B    C5   C  0  1  N  N  N  -1.323  27.169  29.865   1.255   1.000  -0.877  C2B    F7O  12  
F7O  N9     N2   N  0  1  Y  N  N  -2.039  25.967  30.230   2.668   1.051  -0.495  N9     F7O  13  
F7O  C8     C6   C  0  1  Y  N  N  -3.077  25.801  31.020   3.344   2.148  -0.051  C8     F7O  14  
F7O  N7     N3   N  0  1  Y  N  N  -3.366  24.504  31.016   4.583   1.837   0.198  N7     F7O  15  
F7O  C5     C7   C  0  1  Y  N  N  -2.505  23.878  30.210   4.780   0.524  -0.071  C5     F7O  16  
F7O  C4     C8   C  0  1  Y  N  N  -1.704  24.805  29.695   3.553   0.003  -0.513  C4     F7O  17  
F7O  N3     N4   N  0  1  Y  N  N  -0.737  24.506  28.821   3.478  -1.283  -0.844  N3     F7O  18  
F7O  C2     C9   C  0  1  Y  N  N  -0.493  23.112  28.348   4.537  -2.059  -0.760  C2     F7O  19  
F7O  N1     N5   N  0  1  Y  N  N  -1.412  22.162  29.020   5.712  -1.615  -0.350  N1     F7O  20  
F7O  C6     C10  C  0  1  Y  N  N  -2.374  22.601  29.842   5.881  -0.346   0.006  C6     F7O  21  
F7O  N6     N6   N  0  1  N  N  N  -3.220  21.750  30.392   7.116   0.110   0.434  N6     F7O  22  
F7O  OP3    O6   O  0  1  N  Y  N  -2.560  32.509  29.524  -5.561  -0.551  -1.819  OP4    F7O  23  
F7O  H1     H1   H  0  1  N  N  N  -0.270  34.263  28.569  -6.221  -1.287   0.867  H1     F7O  24  
F7O  H2     H2   H  0  1  N  N  N  -2.706  31.104  26.108  -3.122   1.562   1.056  H2     F7O  25  
F7O  H3     H3   H  0  1  N  N  N  -3.264  30.450  27.686  -3.707   0.220   2.069  H3     F7O  26  
F7O  H4     H4   H  0  1  N  N  N  -2.396  28.625  26.253  -1.268   0.351   2.244  H4     F7O  27  
F7O  H5     H5   H  0  1  N  N  N  -0.058  28.644  25.437  -0.687  -1.936   1.381  H5     F7O  28  
F7O  H6     H6   H  0  1  N  N  N   0.215  30.238  26.219  -2.231  -1.900   2.266  H6     F7O  29  
F7O  H7     H7   H  0  1  N  Y  N  -0.533  30.446  23.992  -2.429  -3.037   0.175  H7     F7O  30  
F7O  H8     H8   H  0  1  N  N  N  -0.277  28.871  28.348  -1.337   0.622  -0.663  H8     F7O  31  
F7O  H9     H9   H  0  1  N  N  N  -0.264  26.929  29.688   1.128   0.303  -1.706  H9     F7O  32  
F7O  H10    H10  H  0  1  N  N  N  -1.401  27.907  30.677   0.925   1.993  -1.183  H10    F7O  33  
F7O  H11    H11  H  0  1  N  N  N  -3.596  26.573  31.568   2.915   3.131   0.076  H11    F7O  34  
F7O  H12    H12  H  0  1  N  N  N   0.251  22.833  27.616   4.442  -3.099  -1.036  H12    F7O  35  
F7O  H13    H13  H  0  1  N  N  N  -3.003  20.822  30.091   7.870  -0.499   0.477  H13    F7O  36  
F7O  H14    H14  H  0  1  N  N  N  -3.146  21.803  31.388   7.227   1.038   0.691  H14    F7O  37  
F7O  H15    H15  H  0  1  N  N  N  -3.460  32.806  29.459  -6.456  -0.405  -2.155  H15    F7O  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F7O  "O1'"  "C1'"  SING  N  N   1  
F7O  "C1'"  "C2'"  SING  N  N   2  
F7O  "C2'"  "C3'"  SING  N  N   3  
F7O  "C2'"  "N2'"  SING  N  N   4  
F7O  "C3'"  "O3'"  SING  N  N   5  
F7O  OP2    P      DOUB  N  N   6  
F7O  "O3'"  P      SING  N  N   7  
F7O  "N2'"  C2A    SING  N  N   8  
F7O  O2A    C2A    DOUB  N  N   9  
F7O  P      OP1    SING  N  N  10  
F7O  C2     N3     DOUB  Y  N  11  
F7O  C2     N1     SING  Y  N  12  
F7O  C2A    C2B    SING  N  N  13  
F7O  N3     C4     SING  Y  N  14  
F7O  N1     C6     DOUB  Y  N  15  
F7O  C4     C5     DOUB  Y  N  16  
F7O  C4     N9     SING  Y  N  17  
F7O  C6     C5     SING  Y  N  18  
F7O  C6     N6     SING  N  N  19  
F7O  C2B    N9     SING  N  N  20  
F7O  C5     N7     SING  Y  N  21  
F7O  N9     C8     SING  Y  N  22  
F7O  N7     C8     DOUB  Y  N  23  
F7O  P      OP3    SING  N  N  24  
F7O  OP1    H1     SING  N  N  25  
F7O  "C3'"  H2     SING  N  N  26  
F7O  "C3'"  H3     SING  N  N  27  
F7O  "C2'"  H4     SING  N  N  28  
F7O  "C1'"  H5     SING  N  N  29  
F7O  "C1'"  H6     SING  N  N  30  
F7O  "O1'"  H7     SING  N  N  31  
F7O  "N2'"  H8     SING  N  N  32  
F7O  C2B    H9     SING  N  N  33  
F7O  C2B    H10    SING  N  N  34  
F7O  C8     H11    SING  N  N  35  
F7O  C2     H12    SING  N  N  36  
F7O  N6     H13    SING  N  N  37  
F7O  N6     H14    SING  N  N  38  
F7O  OP3    H15    SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F7O  InChI             InChI                 1.03   "InChI=1S/C10H15N6O6P/c11-9-8-10(13-4-12-9)16(5-14-8)1-7(18)15-6(2-17)3-22-23(19,20)21/h4-6,17H,1-3H2,(H,15,18)(H2,11,12,13)(H2,19,20,21)/t6-/m1/s1"  
F7O  InChIKey          InChI                 1.03   QTPOROPTULPLNT-ZCFIWIBFSA-N  
F7O  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(CC(=O)N[C@H](CO)CO[P](O)(O)=O)cnc12"  
F7O  SMILES            CACTVS                3.385  "Nc1ncnc2n(CC(=O)N[CH](CO)CO[P](O)(O)=O)cnc12"  
F7O  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)CC(=O)N[C@H](CO)COP(=O)(O)O)N"  
F7O  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)CC(=O)NC(CO)COP(=O)(O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          F7O
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R})-2-[2-(6-aminopurin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F7O  "Create component"      2020-04-07  PDBJ  
F7O  "Modify internal type"  2020-10-29  PDBJ  
F7O  "Modify linking type"   2020-10-29  PDBJ  
F7O  "Modify atom id"        2020-11-18  PDBJ  
F7O  "Initial release"       2020-11-25  RCSB  
##
