data_QBO
# 
_chem_comp.id                                    QBO 
_chem_comp.name                                  "(4~{R})-4-[(1~{R},2~{S},5~{R},6~{R},13~{S},14~{S},17~{R},19~{R})-6,14-dimethyl-17-oxidanyl-7,8,9,10-tetrazapentacyclo[11.8.0.0^{2,6}.0^{7,11}.0^{14,19}]henicosa-8,10-dien-5-yl]pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H38 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-24 
_chem_comp.pdbx_modified_date                    2023-05-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        430.584 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QBO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BBS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QBO OBB O1  O 0 1 N N N -9.493  31.444 -12.236 -7.066 -0.914 1.238  OBB QBO 1  
QBO CBE C1  C 0 1 N N N -10.014 32.272 -11.446 -7.062 -0.652 0.059  CBE QBO 2  
QBO OBD O2  O 0 1 N N N -10.085 33.521 -11.497 -8.203 -0.713 -0.646 OBD QBO 3  
QBO CAY C2  C 0 1 N N N -10.660 31.755 -10.169 -5.778 -0.251 -0.620 CAY QBO 4  
QBO CAL C3  C 0 1 N N N -12.181 31.538 -10.362 -4.639 -0.255 0.401  CAL QBO 5  
QBO CAH C4  C 0 1 N N R -12.778 31.045 -8.957  -3.335 0.152  -0.288 CAH QBO 6  
QBO CAI C5  C 0 1 N N N -13.126 32.261 -8.139  -3.442 1.600  -0.769 CAI QBO 7  
QBO CAM C6  C 0 1 N N R -14.131 30.211 -8.961  -2.175 0.028  0.702  CAM QBO 8  
QBO CAE C7  C 0 1 N N N -15.103 30.769 -10.008 -2.129 -1.396 1.288  CAE QBO 9  
QBO CAF C8  C 0 1 N N N -15.842 29.572 -10.571 -0.749 -1.985 0.933  CAF QBO 10 
QBO CAN C9  C 0 1 N N S -15.580 28.398 -9.551  0.125  -0.769 0.586  CAN QBO 11 
QBO CAU C10 C 0 1 N N R -14.077 28.688 -9.183  -0.838 0.243  -0.022 CAU QBO 12 
QBO CAS C11 C 0 1 N N N -12.987 28.255 -10.200 -1.007 -0.031 -1.518 CAS QBO 13 
QBO NBC N1  N 0 1 Y N N -13.733 28.070 -7.890  -0.319 1.591  0.191  NBC QBO 14 
QBO NAT N2  N 0 1 Y N N -13.217 28.737 -6.849  -0.794 2.568  0.866  NAT QBO 15 
QBO NAO N3  N 0 1 Y N N -13.035 27.780 -5.896  0.020  3.566  0.768  NAO QBO 16 
QBO NAW N4  N 0 1 Y N N -13.522 26.634 -6.377  1.023  3.232  0.025  NAW QBO 17 
QBO CAZ C12 C 0 1 Y N N -13.956 26.796 -7.612  0.843  1.998  -0.356 CAZ QBO 18 
QBO CAV C13 C 0 1 N N N -14.471 25.715 -8.371  1.721  1.146  -1.232 CAV QBO 19 
QBO CAG C14 C 0 1 N N S -15.913 25.952 -8.979  2.321  -0.006 -0.400 CAG QBO 20 
QBO CAA C15 C 0 1 N N R -15.919 27.036 -10.109 1.305  -1.140 -0.278 CAA QBO 21 
QBO CAC C16 C 0 1 N N N -17.354 27.190 -10.765 1.961  -2.379 0.347  CAC QBO 22 
QBO CAD C17 C 0 1 N N N -17.837 25.933 -11.328 3.170  -2.822 -0.470 CAD QBO 23 
QBO CAB C18 C 0 1 N N R -17.891 24.860 -10.236 4.196  -1.686 -0.479 CAB QBO 24 
QBO CAR C19 C 0 1 N N N -19.028 25.210 -9.248  4.581  -1.325 0.957  CAR QBO 25 
QBO CAX C20 C 0 1 N N R -19.058 24.028 -8.236  5.593  -0.178 0.937  CAX QBO 26 
QBO OBA O3  O 0 1 N N N -20.114 24.309 -7.271  5.949  0.166  2.277  OBA QBO 27 
QBO CAQ C21 C 0 1 N N N -17.810 23.881 -7.475  4.976  1.039  0.245  CAQ QBO 28 
QBO CAJ C22 C 0 1 N N N -16.678 23.499 -8.440  4.589  0.672  -1.189 CAJ QBO 29 
QBO CAP C23 C 0 1 N N S -16.508 24.622 -9.540  3.569  -0.472 -1.161 CAP QBO 30 
QBO CAK C24 C 0 1 N N N -15.573 24.034 -10.618 3.184  -0.838 -2.595 CAK QBO 31 
QBO H1  H1  H 0 1 N N N -9.656  33.831 -12.286 -9.002 -0.971 -0.167 H1  QBO 32 
QBO H2  H2  H 0 1 N N N -10.193 30.798 -9.892  -5.552 -0.959 -1.418 H2  QBO 33 
QBO H3  H3  H 0 1 N N N -10.501 32.487 -9.364  -5.885 0.748  -1.041 H3  QBO 34 
QBO H4  H4  H 0 1 N N N -12.660 32.481 -10.664 -4.864 0.452  1.199  H4  QBO 35 
QBO H5  H5  H 0 1 N N N -12.357 30.774 -11.134 -4.531 -1.255 0.822  H5  QBO 36 
QBO H6  H6  H 0 1 N N N -12.006 30.458 -8.438  -3.155 -0.502 -1.141 H6  QBO 37 
QBO H7  H7  H 0 1 N N N -13.538 31.945 -7.169  -4.189 1.666  -1.560 H7  QBO 38 
QBO H8  H8  H 0 1 N N N -12.220 32.863 -7.974  -3.738 2.239  0.064  H8  QBO 39 
QBO H9  H9  H 0 1 N N N -13.874 32.863 -8.677  -2.476 1.928  -1.153 H9  QBO 40 
QBO H10 H10 H 0 1 N N N -14.595 30.372 -7.977  -2.287 0.759  1.503  H10 QBO 41 
QBO H11 H11 H 0 1 N N N -14.550 31.287 -10.806 -2.249 -1.356 2.371  H11 QBO 42 
QBO H12 H12 H 0 1 N N N -15.810 31.469 -9.539  -2.920 -2.004 0.849  H12 QBO 43 
QBO H13 H13 H 0 1 N N N -16.919 29.785 -10.644 -0.334 -2.519 1.788  H13 QBO 44 
QBO H14 H14 H 0 1 N N N -15.451 29.312 -11.566 -0.831 -2.651 0.073  H14 QBO 45 
QBO H15 H15 H 0 1 N N N -16.193 28.580 -8.656  0.512  -0.353 1.516  H15 QBO 46 
QBO H16 H16 H 0 1 N N N -11.994 28.521 -9.809  -1.640 -0.908 -1.657 H16 QBO 47 
QBO H17 H17 H 0 1 N N N -13.041 27.167 -10.354 -1.472 0.831  -1.995 H17 QBO 48 
QBO H18 H18 H 0 1 N N N -13.154 28.770 -11.158 -0.031 -0.212 -1.967 H18 QBO 49 
QBO H19 H19 H 0 1 N N N -14.517 24.831 -7.718  1.128  0.734  -2.049 H19 QBO 50 
QBO H20 H20 H 0 1 N N N -13.778 25.521 -9.203  2.526  1.756  -1.641 H20 QBO 51 
QBO H21 H21 H 0 1 N N N -16.567 26.303 -8.167  2.602  0.358  0.588  H21 QBO 52 
QBO H22 H22 H 0 1 N N N -15.195 26.755 -10.888 0.947  -1.403 -1.273 H22 QBO 53 
QBO H23 H23 H 0 1 N N N -17.299 27.940 -11.568 2.280  -2.143 1.362  H23 QBO 54 
QBO H24 H24 H 0 1 N N N -18.062 27.529 -9.994  1.234  -3.191 0.379  H24 QBO 55 
QBO H25 H25 H 0 1 N N N -18.845 26.082 -11.743 3.612  -3.710 -0.017 H25 QBO 56 
QBO H26 H26 H 0 1 N N N -17.156 25.606 -12.128 2.861  -3.045 -1.491 H26 QBO 57 
QBO H27 H27 H 0 1 N N N -18.168 23.914 -10.724 5.082  -1.998 -1.033 H27 QBO 58 
QBO H28 H28 H 0 1 N N N -18.813 26.157 -8.731  3.691  -1.016 1.505  H28 QBO 59 
QBO H29 H29 H 0 1 N N N -19.989 25.291 -9.777  5.025  -2.194 1.444  H29 QBO 60 
QBO H30 H30 H 0 1 N N N -19.279 23.098 -8.781  6.485  -0.490 0.394  H30 QBO 61 
QBO H31 H31 H 0 1 N N N -20.159 23.604 -6.636  6.589  0.888  2.341  H31 QBO 62 
QBO H32 H32 H 0 1 N N N -17.931 23.093 -6.717  4.087  1.355  0.791  H32 QBO 63 
QBO H33 H33 H 0 1 N N N -17.566 24.832 -6.979  5.700  1.854  0.229  H33 QBO 64 
QBO H34 H34 H 0 1 N N N -16.921 22.544 -8.928  4.149  1.540  -1.681 H34 QBO 65 
QBO H35 H35 H 0 1 N N N -15.739 23.394 -7.877  5.477  0.355  -1.736 H35 QBO 66 
QBO H36 H36 H 0 1 N N N -14.581 23.846 -10.181 2.467  -1.659 -2.581 H36 QBO 67 
QBO H37 H37 H 0 1 N N N -15.994 23.089 -10.992 2.735  0.027  -3.083 H37 QBO 68 
QBO H38 H38 H 0 1 N N N -15.478 24.748 -11.450 4.075  -1.144 -3.144 H38 QBO 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QBO OBB CBE DOUB N N 1  
QBO OBD CBE SING N N 2  
QBO CBE CAY SING N N 3  
QBO CAD CAC SING N N 4  
QBO CAD CAB SING N N 5  
QBO CAC CAA SING N N 6  
QBO CAK CAP SING N N 7  
QBO CAF CAE SING N N 8  
QBO CAF CAN SING N N 9  
QBO CAL CAY SING N N 10 
QBO CAL CAH SING N N 11 
QBO CAB CAP SING N N 12 
QBO CAB CAR SING N N 13 
QBO CAS CAU SING N N 14 
QBO CAA CAN SING N N 15 
QBO CAA CAG SING N N 16 
QBO CAE CAM SING N N 17 
QBO CAN CAU SING N N 18 
QBO CAP CAG SING N N 19 
QBO CAP CAJ SING N N 20 
QBO CAR CAX SING N N 21 
QBO CAU CAM SING N N 22 
QBO CAU NBC SING N N 23 
QBO CAG CAV SING N N 24 
QBO CAM CAH SING N N 25 
QBO CAH CAI SING N N 26 
QBO CAJ CAQ SING N N 27 
QBO CAV CAZ SING N N 28 
QBO CAX CAQ SING N N 29 
QBO CAX OBA SING N N 30 
QBO NBC CAZ SING Y N 31 
QBO NBC NAT SING Y N 32 
QBO CAZ NAW DOUB Y N 33 
QBO NAT NAO DOUB Y N 34 
QBO NAW NAO SING Y N 35 
QBO OBD H1  SING N N 36 
QBO CAY H2  SING N N 37 
QBO CAY H3  SING N N 38 
QBO CAL H4  SING N N 39 
QBO CAL H5  SING N N 40 
QBO CAH H6  SING N N 41 
QBO CAI H7  SING N N 42 
QBO CAI H8  SING N N 43 
QBO CAI H9  SING N N 44 
QBO CAM H10 SING N N 45 
QBO CAE H11 SING N N 46 
QBO CAE H12 SING N N 47 
QBO CAF H13 SING N N 48 
QBO CAF H14 SING N N 49 
QBO CAN H15 SING N N 50 
QBO CAS H16 SING N N 51 
QBO CAS H17 SING N N 52 
QBO CAS H18 SING N N 53 
QBO CAV H19 SING N N 54 
QBO CAV H20 SING N N 55 
QBO CAG H21 SING N N 56 
QBO CAA H22 SING N N 57 
QBO CAC H23 SING N N 58 
QBO CAC H24 SING N N 59 
QBO CAD H25 SING N N 60 
QBO CAD H26 SING N N 61 
QBO CAB H27 SING N N 62 
QBO CAR H28 SING N N 63 
QBO CAR H29 SING N N 64 
QBO CAX H30 SING N N 65 
QBO OBA H31 SING N N 66 
QBO CAQ H32 SING N N 67 
QBO CAQ H33 SING N N 68 
QBO CAJ H34 SING N N 69 
QBO CAJ H35 SING N N 70 
QBO CAK H36 SING N N 71 
QBO CAK H37 SING N N 72 
QBO CAK H38 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QBO InChI            InChI                1.06  "InChI=1S/C24H38N4O3/c1-14(4-9-22(30)31)18-7-8-19-17-6-5-15-12-16(29)10-11-23(15,2)20(17)13-21-25-26-27-28(21)24(18,19)3/h14-20,29H,4-13H2,1-3H3,(H,30,31)/t14-,15-,16-,17+,18-,19+,20+,23+,24-/m1/s1" 
QBO InChIKey         InChI                1.06  MIQKAEOABWRKCI-VPUMZWJWSA-N                                                                                                                                                                            
QBO SMILES_CANONICAL CACTVS               3.385 "C[C@H](CCC(O)=O)[C@H]1CC[C@H]2[C@@H]3CC[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3Cc5nnnn5[C@]12C"                                                                                                               
QBO SMILES           CACTVS               3.385 "C[CH](CCC(O)=O)[CH]1CC[CH]2[CH]3CC[CH]4C[CH](O)CC[C]4(C)[CH]3Cc5nnnn5[C]12C"                                                                                                                          
QBO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCC(=O)O)[C@H]1CC[C@@H]2[C@@]1(n3c(nnn3)C[C@H]4[C@H]2CC[C@H]5[C@@]4(CC[C@H](C5)O)C)C"                                                                                                          
QBO SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CCC(=O)O)C1CCC2C1(n3c(nnn3)CC4C2CCC5C4(CCC(C5)O)C)C"                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           QBO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(4~{R})-4-[(1~{R},2~{S},5~{R},6~{R},13~{S},14~{S},17~{R},19~{R})-6,14-dimethyl-17-oxidanyl-7,8,9,10-tetrazapentacyclo[11.8.0.0^{2,6}.0^{7,11}.0^{14,19}]henicosa-8,10-dien-5-yl]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QBO "Create component" 2022-10-24 PDBE 
QBO "Initial release"  2023-03-08 RCSB 
QBO "Modify formula"   2023-05-15 PDBE 
# 
