data_QEO
# 
_chem_comp.id                                    QEO 
_chem_comp.name                                  "2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H23 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-22 
_chem_comp.pdbx_modified_date                    2022-12-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        409.394 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QEO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7U1O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QEO "O5'" O1  O 0 1 N N N 74.456 12.871 67.066 3.556  4.611  0.660  "O5'" QEO 1  
QEO "C5'" C1  C 0 1 N N N 74.102 11.515 67.347 4.133  3.688  -0.266 "C5'" QEO 2  
QEO "C4'" C2  C 0 1 N N R 72.603 11.360 67.155 4.193  2.298  0.370  "C4'" QEO 3  
QEO "C3'" C3  C 0 1 N N S 72.185 11.390 65.693 4.910  1.318  -0.579 "C3'" QEO 4  
QEO "O3'" O2  O 0 1 N N N 71.170 10.390 65.552 6.077  0.780  0.047  "O3'" QEO 5  
QEO "C2'" C4  C 0 1 N N R 71.679 12.819 65.476 3.866  0.204  -0.834 "C2'" QEO 6  
QEO "O2'" O3  O 0 1 N N N 70.707 12.972 64.434 4.483  -1.085 -0.828 "O2'" QEO 7  
QEO "O4'" O4  O 0 1 N N N 71.929 12.462 67.774 2.861  1.796  0.574  "O4'" QEO 8  
QEO "C1'" C5  C 0 1 N N R 71.056 13.087 66.829 2.914  0.367  0.378  "C1'" QEO 9  
QEO N2    N1  N 0 1 Y N N 70.937 14.464 67.334 1.584  -0.160 0.063  N2    QEO 10 
QEO C10   C6  C 0 1 Y N N 70.014 14.721 68.254 1.212  -1.467 0.183  C10   QEO 11 
QEO N3    N2  N 0 1 N N N 69.084 13.887 68.795 1.852  -2.577 0.578  N3    QEO 12 
QEO C12   C7  C 0 1 N N N 68.217 14.342 69.703 1.245  -3.742 0.599  C12   QEO 13 
QEO N5    N3  N 0 1 N N N 67.315 13.493 70.205 1.944  -4.848 1.013  N5    QEO 14 
QEO N4    N4  N 0 1 N N N 68.229 15.614 70.123 -0.058 -3.887 0.225  N4    QEO 15 
QEO C11   C8  C 0 1 N N N 69.121 16.505 69.653 -0.771 -2.814 -0.186 C11   QEO 16 
QEO O3    O5  O 0 1 N N N 69.078 17.775 70.130 -1.937 -2.929 -0.523 O3    QEO 17 
QEO C9    C9  C 0 1 Y N N 70.111 16.056 68.634 -0.130 -1.556 -0.213 C9    QEO 18 
QEO C8    C10 C 0 1 Y N N 71.665 15.563 67.100 0.527  0.590  -0.389 C8    QEO 19 
QEO C7    C11 C 0 1 Y N N 71.171 16.603 67.897 -0.540 -0.202 -0.582 C7    QEO 20 
QEO C6    C12 C 0 1 N N N 71.751 18.007 67.900 -1.900 0.223  -1.072 C6    QEO 21 
QEO N1    N5  N 0 1 N N N 70.876 18.999 68.536 -2.814 0.353  0.071  N1    QEO 22 
QEO C1    C13 C 0 1 N N S 71.500 20.295 68.872 -4.152 0.768  -0.370 C1    QEO 23 
QEO C2    C14 C 0 1 N N R 71.636 20.402 70.392 -4.898 1.490  0.777  C2    QEO 24 
QEO O1    O6  O 0 1 N N N 72.873 21.050 70.710 -4.810 2.909  0.632  O1    QEO 25 
QEO C3    C15 C 0 1 N N N 70.577 21.445 68.555 -5.003 -0.442 -0.679 C3    QEO 26 
QEO C5    C16 C 0 1 N N N 69.977 21.928 69.638 -6.200 -0.317 -0.174 C5    QEO 27 
QEO C4    C17 C 0 1 N N S 70.387 21.176 70.887 -6.347 0.998  0.557  C4    QEO 28 
QEO O2    O7  O 0 1 N N N 70.574 22.019 72.050 -7.074 1.933  -0.243 O2    QEO 29 
QEO H1    H1  H 0 1 N N N 75.392 12.985 67.182 3.487  5.515  0.323  H1    QEO 30 
QEO H2    H2  H 0 1 N N N 74.636 10.842 66.660 3.523  3.649  -1.168 H2    QEO 31 
QEO H3    H3  H 0 1 N N N 74.371 11.268 68.385 5.141  4.014  -0.523 H3    QEO 32 
QEO H4    H4  H 0 1 N N N 72.277 10.410 67.604 4.720  2.348  1.322  H4    QEO 33 
QEO H5    H5  H 0 1 N N N 73.049 11.189 65.043 5.174  1.815  -1.512 H5    QEO 34 
QEO H6    H6  H 0 1 N N N 71.549 9.531  65.698 6.739  1.444  0.281  H6    QEO 35 
QEO H7    H7  H 0 1 N N N 72.534 13.493 65.319 3.336  0.375  -1.771 H7    QEO 36 
QEO H8    H8  H 0 1 N N N 70.451 13.885 64.370 5.154  -1.203 -1.515 H8    QEO 37 
QEO H9    H9  H 0 1 N N N 70.068 12.605 66.862 3.324  -0.129 1.257  H9    QEO 38 
QEO H10   H10 H 0 1 N N N 67.300 12.541 69.899 2.872  -4.762 1.283  H10   QEO 39 
QEO H11   H11 H 0 1 N N N 66.655 13.810 70.886 1.511  -5.715 1.035  H11   QEO 40 
QEO H12   H12 H 0 1 N N N 67.558 15.909 70.803 -0.475 -4.762 0.253  H12   QEO 41 
QEO H13   H13 H 0 1 N N N 72.494 15.635 66.412 0.551  1.656  -0.566 H13   QEO 42 
QEO H14   H14 H 0 1 N N N 72.708 17.988 68.442 -1.818 1.183  -1.582 H14   QEO 43 
QEO H15   H15 H 0 1 N N N 71.926 18.314 66.858 -2.287 -0.524 -1.764 H15   QEO 44 
QEO H16   H16 H 0 1 N N N 70.115 19.179 67.913 -2.857 -0.505 0.599  H16   QEO 45 
QEO H18   H18 H 0 1 N N N 72.476 20.418 68.379 -4.080 1.416  -1.243 H18   QEO 46 
QEO H19   H19 H 0 1 N N N 71.615 19.390 70.823 -4.520 1.173  1.749  H19   QEO 47 
QEO H20   H20 H 0 1 N N N 72.962 21.119 71.653 -5.263 3.404  1.329  H20   QEO 48 
QEO H21   H21 H 0 1 N N N 70.421 21.833 67.559 -4.665 -1.298 -1.244 H21   QEO 49 
QEO H23   H23 H 0 1 N N N 69.282 22.755 69.629 -6.982 -1.055 -0.266 H23   QEO 50 
QEO H25   H25 H 0 1 N N N 69.605 20.435 71.109 -6.846 0.846  1.514  H25   QEO 51 
QEO H26   H26 H 0 1 N N N 70.829 21.483 72.792 -7.991 1.676  -0.413 H26   QEO 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QEO "O2'" "C2'" SING N N 1  
QEO "C2'" "C3'" SING N N 2  
QEO "C2'" "C1'" SING N N 3  
QEO "O3'" "C3'" SING N N 4  
QEO "C3'" "C4'" SING N N 5  
QEO "C1'" N2    SING N N 6  
QEO "C1'" "O4'" SING N N 7  
QEO "O5'" "C5'" SING N N 8  
QEO C8    N2    SING Y N 9  
QEO C8    C7    DOUB Y N 10 
QEO "C4'" "C5'" SING N N 11 
QEO "C4'" "O4'" SING N N 12 
QEO N2    C10   SING Y N 13 
QEO C7    C6    SING N N 14 
QEO C7    C9    SING Y N 15 
QEO C6    N1    SING N N 16 
QEO C10   C9    DOUB Y N 17 
QEO C10   N3    SING N N 18 
QEO N1    C1    SING N N 19 
QEO C3    C1    SING N N 20 
QEO C3    C5    DOUB N N 21 
QEO C9    C11   SING N N 22 
QEO N3    C12   DOUB N N 23 
QEO C1    C2    SING N N 24 
QEO C5    C4    SING N N 25 
QEO C11   N4    SING N N 26 
QEO C11   O3    DOUB N N 27 
QEO C12   N4    SING N N 28 
QEO C12   N5    SING N N 29 
QEO C2    O1    SING N N 30 
QEO C2    C4    SING N N 31 
QEO C4    O2    SING N N 32 
QEO "O5'" H1    SING N N 33 
QEO "C5'" H2    SING N N 34 
QEO "C5'" H3    SING N N 35 
QEO "C4'" H4    SING N N 36 
QEO "C3'" H5    SING N N 37 
QEO "O3'" H6    SING N N 38 
QEO "C2'" H7    SING N N 39 
QEO "O2'" H8    SING N N 40 
QEO "C1'" H9    SING N N 41 
QEO N5    H10   SING N N 42 
QEO N5    H11   SING N N 43 
QEO N4    H12   SING N N 44 
QEO C8    H13   SING N N 45 
QEO C6    H14   SING N N 46 
QEO C6    H15   SING N N 47 
QEO N1    H16   SING N N 48 
QEO C1    H18   SING N N 49 
QEO C2    H19   SING N N 50 
QEO O1    H20   SING N N 51 
QEO C3    H21   SING N N 52 
QEO C5    H23   SING N N 53 
QEO C4    H25   SING N N 54 
QEO O2    H26   SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QEO SMILES           ACDLabs              12.01 "OC1C=CC(NCc2cn(c3N=C(N)NC(=O)c32)C2OC(CO)C(O)C2O)C1O"                                                                                                                                               
QEO InChI            InChI                1.03  "InChI=1S/C17H23N5O7/c18-17-20-14-10(15(28)21-17)6(3-19-7-1-2-8(24)11(7)25)4-22(14)16-13(27)12(26)9(5-23)29-16/h1-2,4,7-9,11-13,16,19,23-27H,3,5H2,(H3,18,20,21,28)/t7-,8-,9+,11+,12+,13+,16+/m0/s1" 
QEO InChIKey         InChI                1.03  QQXQGKSPIMGUIZ-AEZJAUAXSA-N                                                                                                                                                                          
QEO SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(cc(CN[C@H]3C=C[C@H](O)[C@@H]3O)c2C(=O)N1)[C@@H]4O[C@H](CO)[C@@H](O)[C@H]4O"                                                                                                                
QEO SMILES           CACTVS               3.385 "NC1=Nc2n(cc(CN[CH]3C=C[CH](O)[CH]3O)c2C(=O)N1)[CH]4O[CH](CO)[CH](O)[CH]4O"                                                                                                                          
QEO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N=C(NC2=O)N)CN[C@H]4C=C[C@@H]([C@@H]4O)O"                                                                                                             
QEO SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(c2c(n1C3C(C(C(O3)CO)O)O)N=C(NC2=O)N)CNC4C=CC(C4O)O"                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
QEO "SYSTEMATIC NAME" ACDLabs              12.01 "2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one"                                                            
QEO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-azanyl-5-[[[(1~{S},4~{S},5~{R})-4,5-bis(oxidanyl)cyclopent-2-en-1-yl]amino]methyl]-7-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-3~{H}-pyrrolo[2,3-d]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QEO "Create component" 2022-02-22 RCSB 
QEO "Initial release"  2022-12-21 RCSB 
# 
