data_VDO
# 
_chem_comp.id                                    VDO 
_chem_comp.name                                  "[(1R,2R,3S,4S,5S)-2,3,4-TRIHYDROXY-5-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}CYCLOHEXYL]METHYL DIHYDROGEN PHOSPHATE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H26 N O11 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-25 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.330 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VDO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2WTX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VDO OAY  OAY  O 0 1 N N N 21.373 21.145 56.516 6.132  -0.375 0.994  OAY  VDO 1  
VDO PBA  PBA  P 0 1 N N N 20.382 21.356 55.248 5.176  -1.271 0.057  PBA  VDO 2  
VDO OAZ  OAZ  O 0 1 N N N 21.315 21.254 53.949 5.875  -1.481 -1.378 OAZ  VDO 3  
VDO OAX  OAX  O 0 1 N N N 19.609 22.625 55.270 4.954  -2.588 0.695  OAX  VDO 4  
VDO OAW  OAW  O 0 1 N N N 19.352 20.135 55.190 3.763  -0.524 -0.138 OAW  VDO 5  
VDO CAG  CAG  C 0 1 N N N 18.287 20.159 54.187 2.854  -0.287 0.938  CAG  VDO 6  
VDO CAF  CAF  C 0 1 N N R 16.913 19.986 54.841 1.616  0.440  0.408  CAF  VDO 7  
VDO CAV  CAV  C 0 1 N N N 16.817 18.592 55.481 0.589  0.584  1.533  CAV  VDO 8  
VDO CAE  CAE  C 0 1 N N R 16.659 21.081 55.905 2.017  1.828  -0.097 CAE  VDO 9  
VDO OAU  OAU  O 0 1 N N N 16.844 22.374 55.341 2.976  1.694  -1.147 OAU  VDO 10 
VDO CAC  CAC  C 0 1 N N S 15.255 20.964 56.509 0.779  2.555  -0.626 CAC  VDO 11 
VDO OAP  OAP  O 0 1 N N N 15.076 21.942 57.568 1.153  3.851  -1.098 OAP  VDO 12 
VDO CAB  CAB  C 0 1 N N S 15.037 19.543 57.069 -0.248 2.699  0.498  CAB  VDO 13 
VDO OAO  OAO  O 0 1 N N N 13.696 19.424 57.488 -1.404 3.378  0.004  OAO  VDO 14 
VDO CAA  CAA  C 0 1 N N S 15.407 18.382 56.090 -0.649 1.311  1.003  CAA  VDO 15 
VDO NAN  NAN  N 0 1 N N N 14.399 18.154 54.994 -1.236 0.539  -0.100 NAN  VDO 16 
VDO CAM  CAM  C 0 1 N N S 13.086 17.535 55.369 -2.158 -0.486 0.407  CAM  VDO 17 
VDO CAL  CAL  C 0 1 N N N 12.021 18.126 54.434 -3.523 0.113  0.579  CAL  VDO 18 
VDO CAJ  CAJ  C 0 1 N N S 13.070 15.980 55.330 -2.215 -1.651 -0.583 CAJ  VDO 19 
VDO OAT  OAT  O 0 1 N N N 14.360 15.476 55.648 -2.448 -1.151 -1.901 OAT  VDO 20 
VDO CAI  CAI  C 0 1 N N S 12.637 15.346 53.997 -3.364 -2.581 -0.174 CAI  VDO 21 
VDO OAS  OAS  O 0 1 N N N 12.437 13.949 54.176 -3.230 -2.932 1.205  OAS  VDO 22 
VDO CAH  CAH  C 0 1 N N R 11.319 15.852 53.460 -4.686 -1.840 -0.389 CAH  VDO 23 
VDO OAR  OAR  O 0 1 N N N 11.227 15.475 52.072 -4.931 -1.707 -1.791 OAR  VDO 24 
VDO CAK  CAK  C 0 1 N N N 11.231 17.371 53.563 -4.622 -0.477 0.237  CAK  VDO 25 
VDO CAD  CAD  C 0 1 N N N 10.198 18.080 52.698 -5.920 0.248  0.482  CAD  VDO 26 
VDO OAQ  OAQ  O 0 1 N N N 9.930  19.364 53.232 -5.650 1.518  1.079  OAQ  VDO 27 
VDO HAY  HAY  H 0 1 N N N 22.272 21.104 56.212 6.321  0.503  0.637  HAY  VDO 28 
VDO HAZ  HAZ  H 0 1 N N N 20.772 21.234 53.170 6.733  -1.926 -1.337 HAZ  VDO 29 
VDO HAG1 HAG1 H 0 0 N N N 18.313 21.125 53.661 2.556  -1.238 1.379  HAG1 VDO 30 
VDO HAG2 HAG2 H 0 0 N N N 18.448 19.329 53.484 3.340  0.328  1.696  HAG2 VDO 31 
VDO HAF  HAF  H 0 1 N N N 16.142 20.086 54.063 1.181  -0.133 -0.410 HAF  VDO 32 
VDO HAV1 HAV1 H 0 0 N N N 16.998 17.826 54.712 0.303  -0.404 1.893  HAV1 VDO 33 
VDO HAV2 HAV2 H 0 0 N N N 17.570 18.509 56.278 1.024  1.157  2.352  HAV2 VDO 34 
VDO HAE  HAE  H 0 1 N N N 17.389 20.934 56.715 2.452  2.401  0.722  HAE  VDO 35 
VDO HAA  HAA  H 0 1 N N N 15.402 17.472 56.708 -1.381 1.414  1.805  HAA  VDO 36 
VDO HAU  HAU  H 0 1 N N N 16.885 23.020 56.036 3.276  2.536  -1.516 HAU  VDO 37 
VDO HAC  HAC  H 0 1 N N N 14.516 21.158 55.717 0.344  1.982  -1.445 HAC  VDO 38 
VDO HAP  HAP  H 0 1 N N N 15.037 21.498 58.407 0.416  4.369  -1.449 HAP  VDO 39 
VDO HAB  HAB  H 0 1 N N N 15.735 19.429 57.912 0.187  3.272  1.317  HAB  VDO 40 
VDO HAO  HAO  H 0 1 N N N 13.661 19.397 58.437 -1.225 4.266  -0.334 HAO  VDO 41 
VDO HAN  HAN  H 0 1 N N N 14.194 19.050 54.600 -1.698 1.146  -0.761 HAN  VDO 42 
VDO HAM  HAM  H 0 1 N N N 12.881 17.776 56.423 -1.799 -0.850 1.370  HAM  VDO 43 
VDO HAL  HAL  H 0 1 N N N 11.873 19.196 54.451 -3.592 1.099  1.015  HAL  VDO 44 
VDO HAJ  HAJ  H 0 1 N N N 12.306 15.701 56.071 -1.272 -2.198 -0.561 HAJ  VDO 45 
VDO HAT  HAT  H 0 1 N N N 14.862 15.364 54.849 -2.496 -1.838 -2.580 HAT  VDO 46 
VDO HAI  HAI  H 0 1 N N N 13.443 15.605 53.295 -3.342 -3.483 -0.785 HAI  VDO 47 
VDO HAS  HAS  H 0 1 N N N 12.392 13.524 53.328 -3.926 -3.519 1.531  HAS  VDO 48 
VDO HAH  HAH  H 0 1 N N N 10.499 15.416 54.050 -5.497 -2.407 0.067  HAH  VDO 49 
VDO HAR  HAR  H 0 1 N N N 11.207 16.256 51.532 -5.754 -1.245 -2.004 HAR  VDO 50 
VDO HAD1 HAD1 H 0 0 N N N 10.587 18.184 51.675 -6.439 0.395  -0.465 HAD1 VDO 51 
VDO HAD2 HAD2 H 0 0 N N N 9.269  17.491 52.682 -6.546 -0.342 1.152  HAD2 VDO 52 
VDO HAQ  HAQ  H 0 1 N N N 9.870  19.308 54.178 -6.442 2.042  1.266  HAQ  VDO 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VDO OAY PBA  SING N N 1  
VDO PBA OAZ  SING N N 2  
VDO PBA OAX  DOUB N N 3  
VDO PBA OAW  SING N N 4  
VDO OAW CAG  SING N N 5  
VDO CAG CAF  SING N N 6  
VDO CAF CAV  SING N N 7  
VDO CAF CAE  SING N N 8  
VDO CAV CAA  SING N N 9  
VDO CAE OAU  SING N N 10 
VDO CAE CAC  SING N N 11 
VDO CAC OAP  SING N N 12 
VDO CAC CAB  SING N N 13 
VDO CAB OAO  SING N N 14 
VDO CAB CAA  SING N N 15 
VDO CAA NAN  SING N N 16 
VDO NAN CAM  SING N N 17 
VDO CAM CAL  SING N N 18 
VDO CAM CAJ  SING N N 19 
VDO CAL CAK  DOUB N N 20 
VDO CAJ OAT  SING N N 21 
VDO CAJ CAI  SING N N 22 
VDO CAI OAS  SING N N 23 
VDO CAI CAH  SING N N 24 
VDO CAH OAR  SING N N 25 
VDO CAH CAK  SING N N 26 
VDO CAK CAD  SING N N 27 
VDO CAD OAQ  SING N N 28 
VDO OAY HAY  SING N N 29 
VDO OAZ HAZ  SING N N 30 
VDO CAG HAG1 SING N N 31 
VDO CAG HAG2 SING N N 32 
VDO CAF HAF  SING N N 33 
VDO CAV HAV1 SING N N 34 
VDO CAV HAV2 SING N N 35 
VDO CAE HAE  SING N N 36 
VDO CAA HAA  SING N N 37 
VDO OAU HAU  SING N N 38 
VDO CAC HAC  SING N N 39 
VDO OAP HAP  SING N N 40 
VDO CAB HAB  SING N N 41 
VDO OAO HAO  SING N N 42 
VDO NAN HAN  SING N N 43 
VDO CAM HAM  SING N N 44 
VDO CAL HAL  SING N N 45 
VDO CAJ HAJ  SING N N 46 
VDO OAT HAT  SING N N 47 
VDO CAI HAI  SING N N 48 
VDO OAS HAS  SING N N 49 
VDO CAH HAH  SING N N 50 
VDO OAR HAR  SING N N 51 
VDO CAD HAD1 SING N N 52 
VDO CAD HAD2 SING N N 53 
VDO OAQ HAQ  SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VDO SMILES           ACDLabs              10.04 "O=P(O)(O)OCC2C(O)C(O)C(O)C(NC1C=C(CO)C(O)C(O)C1O)C2"                                                                                                                   
VDO SMILES_CANONICAL CACTVS               3.352 "OCC1=C[C@H](N[C@H]2C[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O"                                                                            
VDO SMILES           CACTVS               3.352 "OCC1=C[CH](N[CH]2C[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"                                                                                        
VDO SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C1[C@@H]([C@H]([C@@H]([C@H]([C@H]1N[C@H]2C=C([C@H]([C@@H]([C@H]2O)O)O)CO)O)O)O)COP(=O)(O)O"                                                                            
VDO SMILES           "OpenEye OEToolkits" 1.6.1 "C1C(C(C(C(C1NC2C=C(C(C(C2O)O)O)CO)O)O)O)COP(=O)(O)O"                                                                                                                   
VDO InChI            InChI                1.03  "InChI=1S/C14H26NO11P/c16-3-5-1-7(11(19)13(21)9(5)17)15-8-2-6(4-26-27(23,24)25)10(18)14(22)12(8)20/h1,6-22H,2-4H2,(H2,23,24,25)/t6-,7+,8+,9-,10-,11+,12+,13+,14+/m1/s1" 
VDO InChIKey         InChI                1.03  ZKSTYMJGEHZSFH-MBABXGOBSA-N                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VDO "SYSTEMATIC NAME" ACDLabs              10.04 "[(1R,2R,3S,4S,5S)-2,3,4-trihydroxy-5-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}cyclohexyl]methyl dihydrogen phosphate" 
VDO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1R,2R,3S,4S,5S)-2,3,4-trihydroxy-5-[[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)-1-cyclohex-2-enyl]amino]cyclohexyl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VDO "Create component"  2009-09-25 EBI  
VDO "Modify descriptor" 2011-06-04 RCSB 
# 
