data_ZJO
# 
_chem_comp.id                                    ZJO 
_chem_comp.name                                  "1-oxidanyl-2,4,6,8-tetraphenyl-2,4,6,8-tetraza-1$l^{4},5$l^{3}-diruthenabicyclo[3.3.0]octane" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H25 N4 O Ru2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-27 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        611.643 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZJO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PH8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZJO RU1 RU1 RU 0 0 N N N 2.514  -27.121 16.371 -1.106 -0.250 -0.013 RU1 ZJO 1  
ZJO RU2 RU2 RU 0 0 N N N 2.467  -28.485 18.217 1.148  0.536  0.894  RU2 ZJO 2  
ZJO N1  N1  N  0 1 N N N 2.768  -26.874 19.442 1.928  -0.697 -0.382 N1  ZJO 3  
ZJO N4  N2  N  0 1 N N N 0.415  -28.372 18.187 0.589  2.332  0.438  N4  ZJO 4  
ZJO N3  N3  N  0 1 N N N 0.466  -27.044 16.313 -2.043 1.360  0.174  N3  ZJO 5  
ZJO N2  N4  N  0 1 N N N 2.706  -25.489 17.629 -0.593 -1.970 -0.538 N2  ZJO 6  
ZJO C1  C1  C  0 1 Y N N -0.333 -28.700 19.357 1.373  2.853  -0.593 C1  ZJO 7  
ZJO C2  C2  C  0 1 Y N N -0.036 -25.115 14.961 -3.867 2.911  0.474  C2  ZJO 8  
ZJO C3  C3  C  0 1 Y N N -0.356 -26.414 15.321 -3.405 1.606  0.361  C3  ZJO 9  
ZJO C4  C4  C  0 1 Y N N -0.220 -29.986 19.844 1.069  4.093  -1.140 C4  ZJO 10 
ZJO C5  C5  C  0 1 Y N N 3.188  -27.004 20.794 3.140  -1.207 0.091  C5  ZJO 11 
ZJO C6  C6  C  0 1 Y N N -1.640 -29.360 21.615 2.927  3.887  -2.636 C6  ZJO 12 
ZJO C7  C7  C  0 1 Y N N -1.401 -27.129 14.755 -4.300 0.547  0.435  C7  ZJO 13 
ZJO C9  C8  C  0 1 Y N N 2.473  -24.168 17.112 -1.379 -3.095 -0.799 C9  ZJO 14 
ZJO C10 C9  C  0 1 Y N N -2.176 -26.485 13.806 -5.646 0.793  0.620  C10 ZJO 15 
ZJO C11 C10 C  0 1 Y N N -1.126 -27.755 19.966 2.463  2.136  -1.070 C11 ZJO 16 
ZJO C12 C11 C  0 1 Y N N -0.912 -30.335 20.998 1.846  4.606  -2.160 C12 ZJO 17 
ZJO C13 C12 C  0 1 N N N 2.798  -25.672 18.928 0.926  -1.802 -0.602 C13 ZJO 18 
ZJO C14 C13 C  0 1 Y N N -1.876 -25.193 13.478 -6.103 2.094  0.731  C14 ZJO 19 
ZJO C15 C14 C  0 1 Y N N 4.402  -26.469 21.213 4.317  -0.961 -0.604 C15 ZJO 20 
ZJO C16 C15 C  0 1 N N N -0.179 -27.554 17.346 -0.859 2.324  0.060  C16 ZJO 21 
ZJO C17 C16 C  0 1 Y N N -1.778 -28.091 21.134 3.237  2.655  -2.090 C17 ZJO 22 
ZJO C18 C17 C  0 1 Y N N -0.851 -24.466 14.035 -5.214 3.151  0.664  C18 ZJO 23 
ZJO C20 C18 C  0 1 Y N N 2.388  -27.762 21.605 3.171  -1.957 1.260  C20 ZJO 24 
ZJO C21 C19 C  0 1 Y N N 1.376  -23.452 17.568 -0.780 -4.289 -1.181 C21 ZJO 25 
ZJO C23 C20 C  0 1 Y N N 3.369  -23.654 16.196 -2.760 -3.024 -0.672 C23 ZJO 26 
ZJO C25 C21 C  0 1 Y N N 4.716  -26.645 22.556 5.513  -1.467 -0.134 C25 ZJO 27 
ZJO C26 C22 C  0 1 Y N N 2.762  -27.917 22.942 4.370  -2.459 1.725  C26 ZJO 28 
ZJO C27 C23 C  0 1 Y N N 3.146  -22.388 15.643 -3.533 -4.140 -0.926 C27 ZJO 29 
ZJO C28 C24 C  0 1 Y N N 1.171  -22.200 17.027 -1.559 -5.399 -1.438 C28 ZJO 30 
ZJO C29 C25 C  0 1 Y N N 3.916  -27.345 23.407 5.539  -2.217 1.027  C29 ZJO 31 
ZJO C30 C26 C  0 1 Y N N 2.038  -21.705 16.087 -2.934 -5.327 -1.306 C30 ZJO 32 
ZJO O5  O1  O  0 1 N N N 2.909  -30.151 19.879 1.639  0.273  2.648  O5  ZJO 33 
ZJO H1  H1  H  0 1 N N N 0.823  -24.618 15.387 -3.174 3.737  0.418  H1  ZJO 34 
ZJO H2  H2  H  0 1 N N N 0.398  -30.712 19.336 0.225  4.655  -0.769 H2  ZJO 35 
ZJO H3  H3  H  0 1 N N N -2.137 -29.608 22.541 3.533  4.290  -3.434 H3  ZJO 36 
ZJO H4  H4  H  0 1 N N N -1.602 -28.150 15.044 -3.944 -0.469 0.347  H4  ZJO 37 
ZJO H5  H5  H  0 1 N N N -3.003 -26.994 13.333 -6.343 -0.030 0.677  H5  ZJO 38 
ZJO H6  H6  H  0 1 N N N -1.236 -26.770 19.538 2.706  1.174  -0.643 H6  ZJO 39 
ZJO H7  H7  H  0 1 N N N -0.875 -31.340 21.391 1.610  5.570  -2.586 H7  ZJO 40 
ZJO H8  H8  H  0 1 N N N 3.752  -25.222 19.241 1.186  -2.193 -1.586 H8  ZJO 41 
ZJO H9  H9  H  0 1 N N N 1.964  -25.117 19.382 1.301  -2.616 0.019  H9  ZJO 42 
ZJO H10 H10 H  0 1 N N N -2.486 -24.710 12.729 -7.156 2.284  0.876  H10 ZJO 43 
ZJO H11 H11 H  0 1 N N N 5.062  -25.948 20.535 4.297  -0.375 -1.511 H11 ZJO 44 
ZJO H12 H12 H  0 1 N N N -0.536 -26.701 17.942 -1.241 3.252  0.485  H12 ZJO 45 
ZJO H13 H13 H  0 1 N N N -1.040 -28.101 16.936 -0.851 2.598  -0.995 H13 ZJO 46 
ZJO H14 H14 H  0 1 N N N -2.384 -27.366 21.656 4.084  2.097  -2.461 H14 ZJO 47 
ZJO H15 H15 H  0 1 N N N -0.684 -23.433 13.766 -5.574 4.165  0.752  H15 ZJO 48 
ZJO H16 H16 H  0 1 N N N 1.492  -28.228 21.222 2.258  -2.146 1.805  H16 ZJO 49 
ZJO H17 H17 H  0 1 N N N 0.710  -23.858 18.315 0.294  -4.348 -1.277 H17 ZJO 50 
ZJO H18 H18 H  0 1 N N N 4.238  -24.226 15.908 -3.229 -2.098 -0.375 H18 ZJO 51 
ZJO H19 H19 H  0 1 N N N 5.628  -26.211 22.938 6.429  -1.275 -0.673 H19 ZJO 52 
ZJO H20 H20 H  0 1 N N N 2.138  -28.490 23.612 4.395  -3.042 2.634  H20 ZJO 53 
ZJO H21 H21 H  0 1 N N N 3.812  -21.968 14.904 -4.607 -4.087 -0.823 H21 ZJO 54 
ZJO H22 H22 H  0 1 N N N 0.325  -21.608 17.345 -1.094 -6.328 -1.735 H22 ZJO 55 
ZJO H23 H23 H  0 1 N N N 4.191  -27.449 24.446 6.476  -2.612 1.393  H23 ZJO 56 
ZJO H24 H24 H  0 1 N N N 1.840  -20.727 15.673 -3.541 -6.198 -1.503 H24 ZJO 57 
ZJO H25 H25 H  0 1 N N N 2.260  -30.090 20.570 2.480  0.685  2.887  H25 ZJO 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZJO C14 C10 DOUB Y N 1  
ZJO C14 C18 SING Y N 2  
ZJO C10 C7  SING Y N 3  
ZJO C18 C2  DOUB Y N 4  
ZJO C7  C3  DOUB Y N 5  
ZJO C2  C3  SING Y N 6  
ZJO C3  N3  SING N N 7  
ZJO C27 C30 DOUB Y N 8  
ZJO C27 C23 SING Y N 9  
ZJO C30 C28 SING Y N 10 
ZJO C23 C9  DOUB Y N 11 
ZJO N3  RU1 SING N N 12 
ZJO N3  C16 SING N N 13 
ZJO RU1 N2  SING N N 14 
ZJO RU1 RU2 SING N N 15 
ZJO C28 C21 DOUB Y N 16 
ZJO C9  C21 SING Y N 17 
ZJO C9  N2  SING N N 18 
ZJO C16 N4  SING N N 19 
ZJO N2  C13 SING N N 20 
ZJO N4  RU2 SING N N 21 
ZJO N4  C1  SING N N 22 
ZJO RU2 N1  SING N N 23 
ZJO RU2 O5  SING N N 24 
ZJO C13 N1  SING N N 25 
ZJO C1  C4  DOUB Y N 26 
ZJO C1  C11 SING Y N 27 
ZJO N1  C5  SING N N 28 
ZJO C4  C12 SING Y N 29 
ZJO C11 C17 DOUB Y N 30 
ZJO C5  C15 DOUB Y N 31 
ZJO C5  C20 SING Y N 32 
ZJO C12 C6  DOUB Y N 33 
ZJO C17 C6  SING Y N 34 
ZJO C15 C25 SING Y N 35 
ZJO C20 C26 DOUB Y N 36 
ZJO C25 C29 DOUB Y N 37 
ZJO C26 C29 SING Y N 38 
ZJO C2  H1  SING N N 39 
ZJO C4  H2  SING N N 40 
ZJO C6  H3  SING N N 41 
ZJO C7  H4  SING N N 42 
ZJO C10 H5  SING N N 43 
ZJO C11 H6  SING N N 44 
ZJO C12 H7  SING N N 45 
ZJO C13 H8  SING N N 46 
ZJO C13 H9  SING N N 47 
ZJO C14 H10 SING N N 48 
ZJO C15 H11 SING N N 49 
ZJO C16 H12 SING N N 50 
ZJO C16 H13 SING N N 51 
ZJO C17 H14 SING N N 52 
ZJO C18 H15 SING N N 53 
ZJO C20 H16 SING N N 54 
ZJO C21 H17 SING N N 55 
ZJO C23 H18 SING N N 56 
ZJO C25 H19 SING N N 57 
ZJO C26 H20 SING N N 58 
ZJO C27 H21 SING N N 59 
ZJO C28 H22 SING N N 60 
ZJO C29 H23 SING N N 61 
ZJO C30 H24 SING N N 62 
ZJO O5  H25 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZJO InChI            InChI                1.06  "InChI=1S/2C13H12N2.H2O.2Ru/c2*1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13;;;/h2*1-10H,11H2;1H2;;/q2*-2;;+2;+3/p-1" 
ZJO InChIKey         InChI                1.06  PDMORHSIDGQFCT-UHFFFAOYSA-M                                                                                      
ZJO SMILES_CANONICAL CACTVS               3.385 "O[Ru]1N(CN([Ru]N(CN1c2ccccc2)c3ccccc3)c4ccccc4)c5ccccc5"                                                        
ZJO SMILES           CACTVS               3.385 "O[Ru]1N(CN([Ru]N(CN1c2ccccc2)c3ccccc3)c4ccccc4)c5ccccc5"                                                        
ZJO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]3([Ru]2N(CN3c4ccccc4)c5ccccc5)O)c6ccccc6"                                                    
ZJO SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N2CN([Ru]3([Ru]2N(CN3c4ccccc4)c5ccccc5)O)c6ccccc6"                                                    
# 
_pdbx_chem_comp_identifier.comp_id           ZJO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-oxidanyl-2,4,6,8-tetraphenyl-2,4,6,8-tetraza-1$l^{4},5$l^{3}-diruthenabicyclo[3.3.0]octane" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZJO "Create component" 2023-06-27 PDBE 
ZJO "Initial release"  2023-09-13 RCSB 
# 
