data_A1ADP
# 
_chem_comp.id                                    A1ADP 
_chem_comp.name                                  "(2R,4R)-2-[(1R)-1-{[(2R)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]-2-(4-hydroxyphenyl)acetyl]amino}-2-oxoethyl]-5-methylidene-1,3-thiazinane-4-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 N5 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-01-24 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        533.554 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ADP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8VEN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ADP C11 C1  C 0 1 N N N N N N -14.744 4.599  22.649 3.174  0.122  0.801  C11 A1ADP 1  
A1ADP C13 C2  C 0 1 N N N N N N -18.096 5.559  21.435 5.680  1.875  -1.158 C13 A1ADP 2  
A1ADP C14 C3  C 0 1 Y N N N N N -11.967 3.014  25.098 -0.174 -2.196 1.355  C14 A1ADP 3  
A1ADP C15 C4  C 0 1 Y N N N N N -11.708 5.434  25.210 0.786  -2.015 -0.833 C15 A1ADP 4  
A1ADP C17 C5  C 0 1 N N N N N N -16.750 7.591  21.131 6.838  0.386  0.387  C17 A1ADP 5  
A1ADP S01 S1  S 0 1 N N N N N N -7.888  5.607  22.681 -4.431 0.596  1.493  S01 A1ADP 6  
A1ADP O01 O1  O 0 1 N N N N N N -9.741  2.198  19.699 -1.995 3.123  1.333  O01 A1ADP 7  
A1ADP O02 O2  O 0 1 N N N N N N -11.174 6.062  21.872 0.012  1.673  -0.883 O02 A1ADP 8  
A1ADP O03 O3  O 0 1 N N N N N N -5.311  1.186  21.657 -5.002 -0.576 -2.221 O03 A1ADP 9  
A1ADP O04 O4  O 0 1 N N N N N N -6.365  0.784  23.429 -7.060 -1.233 -1.758 O04 A1ADP 10 
A1ADP O05 O5  O 0 1 N N N N N N -15.050 3.459  23.023 3.083  -0.268 1.949  O05 A1ADP 11 
A1ADP O06 O6  O 0 1 N N N N N N -14.537 7.321  21.658 5.419  -0.561 2.012  O06 A1ADP 12 
A1ADP O07 O7  O 0 1 N N N N N N -16.480 8.686  20.810 7.855  -0.068 0.869  O07 A1ADP 13 
A1ADP O   O8  O 0 1 N N N N N N -10.918 3.987  28.491 -0.387 -5.420 -0.316 O   A1ADP 14 
A1ADP N01 N1  N 0 1 N N N N N N -7.396  3.226  21.598 -5.002 1.687  -0.891 N01 A1ADP 15 
A1ADP N02 N2  N 0 1 N N N N N N -10.386 3.910  21.661 -1.600 0.738  0.322  N02 A1ADP 16 
A1ADP N03 N3  N 0 1 N N N N N N -13.461 5.157  22.665 2.062  0.345  0.074  N03 A1ADP 17 
A1ADP N04 N4  N 0 1 N N N N N N -15.747 5.540  22.204 4.389  0.336  0.257  N04 A1ADP 18 
A1ADP N05 N5  N 0 1 N N N N N N -17.912 7.093  20.995 6.897  1.229  -0.663 N05 A1ADP 19 
A1ADP C01 C6  C 0 1 N N R N N N -7.969  4.683  21.368 -3.975 0.857  -0.247 C01 A1ADP 20 
A1ADP C02 C7  C 0 1 N N R N N N -9.364  4.373  20.740 -2.622 1.567  -0.321 C02 A1ADP 21 
A1ADP C03 C8  C 0 1 N N N N N N -9.212  3.246  19.624 -2.712 2.894  0.388  C03 A1ADP 22 
A1ADP C07 C9  C 0 1 N N R N N N -6.460  3.065  22.647 -6.283 0.987  -1.010 C07 A1ADP 23 
A1ADP C04 C10 C 0 1 N N N N N N -5.593  4.188  22.904 -6.874 0.739  0.355  C04 A1ADP 24 
A1ADP C05 C11 C 0 1 N N N N N N -6.118  5.516  22.941 -6.100 -0.115 1.340  C05 A1ADP 25 
A1ADP C06 C12 C 0 1 N N N N N N -11.284 4.887  22.150 -0.306 0.869  -0.032 C06 A1ADP 26 
A1ADP C08 C13 C 0 1 N N N N N N -4.001  4.045  22.860 -8.034 1.252  0.684  C08 A1ADP 27 
A1ADP CA  C14 C 0 1 N N R N N N -12.374 4.335  23.029 0.746  0.016  0.629  CA  A1ADP 28 
A1ADP C09 C15 C 0 1 N N N N N N -6.020  1.599  22.598 -6.068 -0.331 -1.708 C09 A1ADP 29 
A1ADP C10 C16 C 0 1 Y N N N N N -11.986 4.273  24.509 0.444  -1.439 0.377  C10 A1ADP 30 
A1ADP C12 C17 C 0 1 N N N N N N -17.189 4.951  22.194 4.497  0.914  -1.083 C12 A1ADP 31 
A1ADP C16 C18 C 0 1 N N N N N N -15.578 6.770  21.731 5.501  0.017  0.949  C16 A1ADP 32 
A1ADP C19 C19 C 0 1 N N N N N N -19.078 7.809  20.453 8.182  1.500  -1.312 C19 A1ADP 33 
A1ADP C20 C20 C 0 1 Y N N N N N -11.590 2.901  26.446 -0.451 -3.529 1.126  C20 A1ADP 34 
A1ADP C21 C21 C 0 1 Y N N N N N -11.359 5.329  26.568 0.501  -3.346 -1.071 C21 A1ADP 35 
A1ADP C22 C22 C 0 1 Y N N N N N -11.280 4.078  27.151 -0.115 -4.108 -0.089 C22 A1ADP 36 
A1ADP C23 C23 C 0 1 N N N N N N -19.316 7.245  19.014 8.409  0.489  -2.438 C23 A1ADP 37 
A1ADP H1  H1  H 0 1 N N N N N N -19.049 5.502  21.981 5.468  2.755  -0.550 H1  A1ADP 38 
A1ADP H2  H2  H 0 1 N N N N N N -18.170 4.974  20.506 5.831  2.180  -2.193 H2  A1ADP 39 
A1ADP H3  H3  H 0 1 N N N N N N -12.238 2.137  24.528 -0.435 -1.745 2.301  H3  A1ADP 40 
A1ADP H4  H4  H 0 1 N N N N N N -11.758 6.398  24.725 1.265  -1.421 -1.597 H4  A1ADP 41 
A1ADP H5  H5  H 0 1 N N N N N N -6.014  -0.069 23.201 -6.875 -2.065 -2.217 H5  A1ADP 42 
A1ADP H6  H6  H 0 1 N N N N N N -10.739 4.856  28.831 -1.257 -5.580 -0.706 H6  A1ADP 43 
A1ADP H7  H7  H 0 1 N N N N N N -8.171  2.623  21.789 -5.113 2.565  -0.407 H7  A1ADP 44 
A1ADP H9  H9  H 0 1 N N N N N N -10.452 2.951  21.935 -1.854 0.095  1.002  H9  A1ADP 45 
A1ADP H10 H10 H 0 1 N N N N N N -13.318 6.117  22.424 2.132  0.724  -0.816 H10 A1ADP 46 
A1ADP H11 H11 H 0 1 N N N N N N -7.352  5.163  20.594 -3.912 -0.105 -0.756 H11 A1ADP 47 
A1ADP H12 H12 H 0 1 N N N N N N -9.717  5.286  20.239 -2.354 1.731  -1.365 H12 A1ADP 48 
A1ADP H13 H13 H 0 1 N N N N N N -8.596  3.453  18.761 -3.417 3.640  0.051  H13 A1ADP 49 
A1ADP H14 H14 H 0 1 N N N N N N -7.106  3.066  23.538 -6.972 1.594  -1.597 H14 A1ADP 50 
A1ADP H16 H16 H 0 1 N N N N N N -5.622  6.106  22.156 -6.034 -1.138 0.970  H16 A1ADP 51 
A1ADP H17 H17 H 0 1 N N N N N N -5.890  5.951  23.925 -6.598 -0.103 2.310  H17 A1ADP 52 
A1ADP H18 H18 H 0 1 N N N N N N -3.379  4.928  22.859 -8.576 1.859  -0.026 H18 A1ADP 53 
A1ADP H19 H19 H 0 1 N N N N N N -3.547  3.065  22.831 -8.447 1.068  1.664  H19 A1ADP 54 
A1ADP H21 H21 H 0 1 N N N N N N -12.580 3.306  22.700 0.746  0.206  1.702  H21 A1ADP 55 
A1ADP H22 H22 H 0 1 N N N N N N -17.560 4.970  23.229 3.579  1.455  -1.316 H22 A1ADP 56 
A1ADP H23 H23 H 0 1 N N N N N N -17.117 3.909  21.850 4.636  0.114  -1.810 H23 A1ADP 57 
A1ADP H24 H24 H 0 1 N N N N N N -18.874 8.889  20.409 8.176  2.508  -1.725 H24 A1ADP 58 
A1ADP H25 H25 H 0 1 N N N N N N -19.961 7.628  21.083 8.984  1.413  -0.579 H25 A1ADP 59 
A1ADP H26 H26 H 0 1 N N N N N N -11.539 1.936  26.929 -0.930 -4.121 1.893  H26 A1ADP 60 
A1ADP H27 H27 H 0 1 N N N N N N -11.155 6.216  27.149 0.756  -3.792 -2.021 H27 A1ADP 61 
A1ADP H28 H28 H 0 1 N N N N N N -20.182 7.749  18.560 8.415  -0.520 -2.024 H28 A1ADP 62 
A1ADP H29 H29 H 0 1 N N N N N N -18.423 7.425  18.398 7.607  0.576  -3.171 H29 A1ADP 63 
A1ADP H30 H30 H 0 1 N N N N N N -19.510 6.164  19.072 9.365  0.690  -2.920 H30 A1ADP 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ADP C23 C19 SING N N 1  
A1ADP C03 O01 DOUB N N 2  
A1ADP C03 C02 SING N N 3  
A1ADP C19 N05 SING N N 4  
A1ADP C02 C01 SING N N 5  
A1ADP C02 N02 SING N N 6  
A1ADP O07 C17 DOUB N N 7  
A1ADP N05 C17 SING N N 8  
A1ADP N05 C13 SING N N 9  
A1ADP C17 C16 SING N N 10 
A1ADP C01 N01 SING N N 11 
A1ADP C01 S01 SING N N 12 
A1ADP C13 C12 SING N N 13 
A1ADP N01 C07 SING N N 14 
A1ADP O03 C09 DOUB N N 15 
A1ADP O06 C16 DOUB N N 16 
A1ADP N02 C06 SING N N 17 
A1ADP C16 N04 SING N N 18 
A1ADP O02 C06 DOUB N N 19 
A1ADP C06 CA  SING N N 20 
A1ADP C12 N04 SING N N 21 
A1ADP N04 C11 SING N N 22 
A1ADP C09 C07 SING N N 23 
A1ADP C09 O04 SING N N 24 
A1ADP C07 C04 SING N N 25 
A1ADP C11 N03 SING N N 26 
A1ADP C11 O05 DOUB N N 27 
A1ADP N03 CA  SING N N 28 
A1ADP S01 C05 SING N N 29 
A1ADP C08 C04 DOUB N N 30 
A1ADP C04 C05 SING N N 31 
A1ADP CA  C10 SING N N 32 
A1ADP C10 C14 DOUB Y N 33 
A1ADP C10 C15 SING Y N 34 
A1ADP C14 C20 SING Y N 35 
A1ADP C15 C21 DOUB Y N 36 
A1ADP C20 C22 DOUB Y N 37 
A1ADP C21 C22 SING Y N 38 
A1ADP C22 O   SING N N 39 
A1ADP C13 H1  SING N N 40 
A1ADP C13 H2  SING N N 41 
A1ADP C14 H3  SING N N 42 
A1ADP C15 H4  SING N N 43 
A1ADP O04 H5  SING N N 44 
A1ADP O   H6  SING N N 45 
A1ADP N01 H7  SING N N 46 
A1ADP N02 H9  SING N N 47 
A1ADP N03 H10 SING N N 48 
A1ADP C01 H11 SING N N 49 
A1ADP C02 H12 SING N N 50 
A1ADP C03 H13 SING N N 51 
A1ADP C07 H14 SING N N 52 
A1ADP C05 H16 SING N N 53 
A1ADP C05 H17 SING N N 54 
A1ADP C08 H18 SING N N 55 
A1ADP C08 H19 SING N N 56 
A1ADP CA  H21 SING N N 57 
A1ADP C12 H22 SING N N 58 
A1ADP C12 H23 SING N N 59 
A1ADP C19 H24 SING N N 60 
A1ADP C19 H25 SING N N 61 
A1ADP C20 H26 SING N N 62 
A1ADP C21 H27 SING N N 63 
A1ADP C23 H28 SING N N 64 
A1ADP C23 H29 SING N N 65 
A1ADP C23 H30 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ADP SMILES           ACDLabs              12.01 "OC(=O)C1NC(SCC1=C)C(C=O)NC(=O)C(NC(=O)N1CCN(CC)C(=O)C1=O)c1ccc(O)cc1"                                                                                                                                                             
A1ADP InChI            InChI                1.06  "InChI=1S/C23H27N5O8S/c1-3-27-8-9-28(21(33)20(27)32)23(36)26-17(13-4-6-14(30)7-5-13)18(31)24-15(10-29)19-25-16(22(34)35)12(2)11-37-19/h4-7,10,15-17,19,25,30H,2-3,8-9,11H2,1H3,(H,24,31)(H,26,36)(H,34,35)/t15-,16-,17-,19-/m1/s1" 
A1ADP InChIKey         InChI                1.06  ZGACUYALUWENPI-YWTNHNAXSA-N                                                                                                                                                                                                        
A1ADP SMILES_CANONICAL CACTVS               3.385 "CCN1CCN(C(=O)N[C@@H](C(=O)N[C@H](C=O)[C@@H]2N[C@@H](C(O)=O)C(=C)CS2)c3ccc(O)cc3)C(=O)C1=O"                                                                                                                                        
A1ADP SMILES           CACTVS               3.385 "CCN1CCN(C(=O)N[CH](C(=O)N[CH](C=O)[CH]2N[CH](C(O)=O)C(=C)CS2)c3ccc(O)cc3)C(=O)C1=O"                                                                                                                                               
A1ADP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1CCN(C(=O)C1=O)C(=O)N[C@H](c2ccc(cc2)O)C(=O)N[C@H](C=O)[C@@H]3N[C@H](C(=C)CS3)C(=O)O"                                                                                                                                          
A1ADP SMILES           "OpenEye OEToolkits" 2.0.7 "CCN1CCN(C(=O)C1=O)C(=O)NC(c2ccc(cc2)O)C(=O)NC(C=O)C3NC(C(=C)CS3)C(=O)O"                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ADP "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,4R)-2-[(1R)-1-{[(2R)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]-2-(4-hydroxyphenyl)acetyl]amino}-2-oxoethyl]-5-methylidene-1,3-thiazinane-4-carboxylic acid"                                        
A1ADP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{R})-2-[(1~{R})-1-[[(2~{R})-2-[[4-ethyl-2,3-bis(oxidanylidene)piperazin-1-yl]carbonylamino]-2-(4-hydroxyphenyl)ethanoyl]amino]-2-oxidanylidene-ethyl]-5-methylidene-1,3-thiazinane-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ADP "Create component" 2024-01-24 RCSB 
A1ADP "Initial release"  2024-03-20 RCSB 
A1ADP "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ADP 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C03 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
