data_EVP
#

_chem_comp.id                                   EVP
_chem_comp.name                                 
;(5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol
-5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C29 H32 O13"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Etoposide; VP-16"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-03-23
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       588.557
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EVP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3QX3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EVP  C1    C1    C  0  1  N  N  N  28.145   98.293  33.805   0.702  -5.607  -0.099  C1    EVP   1  
EVP  O1    O1    O  0  1  N  N  N  29.166   99.168  34.174  -0.430  -4.719  -0.168  O1    EVP   2  
EVP  C2    C2    C  0  1  Y  N  N  27.246  100.243  33.995   1.312  -3.617   0.710  C2    EVP   3  
EVP  O2    O2    O  0  1  N  N  N  27.173   99.113  33.249   1.599  -4.947   0.814  O2    EVP   4  
EVP  C3    C3    C  0  1  Y  N  N  26.236  101.341  34.250   2.018  -2.490   1.090  C3    EVP   5  
EVP  O3    O3    O  0  1  N  N  N  26.065  106.546  37.764   1.372   3.411   0.852  O3    EVP   6  
EVP  C4    C4    C  0  1  Y  N  N  26.620  102.450  35.153   1.498  -1.222   0.866  C4    EVP   7  
EVP  O4    O4    O  0  1  N  N  N  24.353  106.420  36.119   3.058   2.730   2.231  O4    EVP   8  
EVP  C5    C5    C  0  1  N  N  R  25.582  103.621  35.441   2.329  -0.039   1.323  C5    EVP   9  
EVP  O5    O5    O  0  1  N  N  N  23.486  100.155  38.656   4.031  -0.048  -3.251  O5    EVP  10  
EVP  C6    C6    C  0  1  N  N  R  26.168  104.804  36.127   1.413   1.165   1.409  C6    EVP  11  
EVP  O6    O6    O  0  1  N  N  N  20.897  101.497  38.465   6.449   0.955  -2.399  O6    EVP  12  
EVP  C7    C7    C  0  1  N  N  N  25.373  106.003  36.609   2.072   2.503   1.571  C7    EVP  13  
EVP  O7    O7    O  0  1  N  N  N  20.628  103.840  36.819   6.850   1.473   0.275  O7    EVP  14  
EVP  C8    C8    C  0  1  N  N  N  27.159  105.641  38.106   0.273   2.764   0.123  C8    EVP  15  
EVP  O8    O8    O  0  1  N  N  N  29.135  104.642  36.076  -1.343   0.572   0.948  O8    EVP  16  
EVP  C9    C9    C  0  1  N  N  R  27.056  104.434  37.218   0.749   1.308   0.002  C9    EVP  17  
EVP  O9    O9    O  0  1  N  N  N  30.414  105.267  37.681  -3.109   0.876  -0.546  O9    EVP  18  
EVP  C10   C10   C  0  1  N  N  S  28.265  103.677  36.692  -0.355   0.268  -0.038  C10   EVP  19  
EVP  O10   O10   O  0  1  N  N  N  32.792  106.665  39.927  -6.182   0.938  -2.548  O10   EVP  20  
EVP  C11   C11   C  0  1  Y  N  N  27.906  102.490  35.775   0.269  -1.083   0.258  C11   EVP  21  
EVP  O11   O11   O  0  1  N  N  N  33.909  106.464  37.857  -6.729   0.489  -0.313  O11   EVP  22  
EVP  C12   C12   C  0  1  Y  N  N  28.881  101.414  35.517  -0.448  -2.211  -0.117  C12   EVP  23  
EVP  O12   O12   O  0  1  N  N  N  33.190  106.150  35.000  -5.930   0.349   2.453  O12   EVP  24  
EVP  C13   C13   C  0  1  Y  N  N  28.491  100.274  34.580   0.065  -3.476   0.104  C13   EVP  25  
EVP  O13   O13   O  0  1  N  N  N  31.331  104.246  34.492  -3.196  -0.402   2.892  O13   EVP  26  
EVP  C14   C14   C  0  1  Y  N  N  24.384  103.050  36.235   3.430   0.227   0.329  C14   EVP  27  
EVP  C15   C15   C  0  1  Y  N  N  24.540  101.820  37.095   3.224  -0.033  -1.013  C15   EVP  28  
EVP  C16   C16   C  0  1  Y  N  N  23.349  101.276  37.864   4.234   0.209  -1.931  C16   EVP  29  
EVP  C17   C17   C  0  1  Y  N  N  22.012  101.970  37.763   5.455   0.716  -1.501  C17   EVP  30  
EVP  C18   C18   C  0  1  Y  N  N  21.871  103.190  36.905   5.657   0.977  -0.151  C18   EVP  31  
EVP  C19   C19   C  0  1  Y  N  N  23.048  103.728  36.136   4.640   0.736   0.760  C19   EVP  32  
EVP  C20   C20   C  0  1  N  N  N  24.674   99.435  38.598   2.753  -0.568  -3.622  C20   EVP  33  
EVP  C21   C21   C  0  1  N  N  N  20.586  105.121  36.246   6.988   1.717   1.676  C21   EVP  34  
EVP  C22   C22   C  0  1  N  N  R  30.608  104.572  36.550  -2.662   0.147   0.601  C22   EVP  35  
EVP  C23   C23   C  0  1  N  N  R  31.704  105.596  38.201  -4.417   0.506  -0.977  C23   EVP  36  
EVP  C24   C24   C  0  1  N  N  N  31.554  106.378  39.332  -4.826   1.278  -2.232  C24   EVP  37  
EVP  C25   C25   C  0  1  N  N  R  33.768  107.232  39.025  -7.115   1.196  -1.497  C25   EVP  38  
EVP  C26   C26   C  0  1  N  N  S  32.699  106.294  37.254  -5.418   0.830   0.139  C26   EVP  39  
EVP  C27   C27   C  0  1  N  N  R  32.554  105.438  35.989  -5.038   0.027   1.384  C27   EVP  40  
EVP  C28   C28   C  0  1  N  N  R  31.162  105.156  35.613  -3.603   0.398   1.780  C28   EVP  41  
EVP  C29   C29   C  0  1  N  N  N  35.087  107.433  39.710  -8.508   0.735  -1.931  C29   EVP  42  
EVP  H1    H1    H  0  1  N  N  N  28.502   97.549  33.077   0.402  -6.579   0.293  H1    EVP  43  
EVP  H1A   H1A   H  0  1  N  N  N  27.754   97.747  34.676   1.164  -5.714  -1.080  H1A   EVP  44  
EVP  H3    H3    H  0  1  N  N  N  25.261  101.316  33.786   2.981  -2.598   1.566  H3    EVP  45  
EVP  H5    H5    H  0  1  N  N  N  25.248  104.002  34.465   2.759  -0.246   2.303  H5    EVP  46  
EVP  H6    H6    H  0  1  N  N  N  26.633  105.196  35.210   0.662   1.015   2.185  H6    EVP  47  
EVP  HO6   HO6   H  0  1  N  N  N  20.149  102.053  38.283   6.435   1.847  -2.773  HO6   EVP  48  
EVP  H8    H8    H  0  1  N  N  N  28.125  106.143  37.948  -0.654   2.820   0.693  H8    EVP  49  
EVP  H8A   H8A   H  0  1  N  N  N  27.081  105.339  39.161   0.148   3.211  -0.863  H8A   EVP  50  
EVP  H9    H9    H  0  1  N  N  N  26.706  103.659  37.916   1.466   1.179  -0.809  H9    EVP  51  
EVP  H10   H10   H  0  1  N  N  N  28.786  103.185  37.526  -0.814   0.254  -1.027  H10   EVP  52  
EVP  H12   H12   H  0  1  N  N  N  29.855  101.432  35.983  -1.415  -2.101  -0.584  H12   EVP  53  
EVP  HO12  HO12  H  0  0  N  N  N  33.137  105.672  34.181  -5.745  -0.126   3.275  HO12  EVP  54  
EVP  HO13  HO13  H  0  0  N  N  N  31.757  104.701  33.775  -2.298  -0.219   3.200  HO13  EVP  55  
EVP  H15   H15   H  0  1  N  N  N  25.498  101.327  37.164   2.275  -0.427  -1.347  H15   EVP  56  
EVP  H19   H19   H  0  1  N  N  N  22.931  104.602  35.513   4.796   0.943   1.809  H19   EVP  57  
EVP  H20   H20   H  0  1  N  N  N  24.618   98.578  39.286   2.583  -1.515  -3.109  H20   EVP  58  
EVP  H20A  H20A  H  0  0  N  N  N  24.832   99.071  37.572   1.976   0.142  -3.339  H20A  EVP  59  
EVP  H20B  H20B  H  0  0  N  N  N  25.511  100.086  38.890   2.724  -0.728  -4.699  H20B  EVP  60  
EVP  H21   H21   H  0  1  N  N  N  19.550  105.492  36.252   7.984   2.110   1.880  H21   EVP  61  
EVP  H21A  H21A  H  0  0  N  N  N  21.223  105.804  36.828   6.239   2.443   1.994  H21A  EVP  62  
EVP  H21B  H21B  H  0  0  N  N  N  20.952  105.071  35.210   6.846   0.785   2.223  H21B  EVP  63  
EVP  H22   H22   H  0  1  N  N  N  31.181  103.654  36.746  -2.650  -0.918   0.370  H22   EVP  64  
EVP  H23   H23   H  0  1  N  N  N  32.159  104.615  38.401  -4.441  -0.564  -1.185  H23   EVP  65  
EVP  H24   H24   H  0  1  N  N  N  30.929  105.836  40.057  -4.175   1.001  -3.062  H24   EVP  66  
EVP  H24A  H24A  H  0  0  N  N  N  31.070  107.324  39.047  -4.750   2.349  -2.046  H24A  EVP  67  
EVP  H25   H25   H  0  1  N  N  N  33.394  108.220  38.719  -7.138   2.265  -1.289  H25   EVP  68  
EVP  H26   H26   H  0  1  N  N  N  32.524  107.344  36.978  -5.378   1.895   0.367  H26   EVP  69  
EVP  H27   H27   H  0  1  N  N  N  32.993  104.444  36.159  -5.098  -1.039   1.165  H27   EVP  70  
EVP  H28   H28   H  0  1  N  N  N  30.559  106.045  35.375  -3.565   1.451   2.058  H28   EVP  71  
EVP  H29   H29   H  0  1  N  N  N  35.808  107.865  39.000  -8.487  -0.333  -2.146  H29   EVP  72  
EVP  H29A  H29A  H  0  0  N  N  N  34.957  108.117  40.562  -9.221   0.931  -1.130  H29A  EVP  73  
EVP  H29B  H29B  H  0  0  N  N  N  35.464  106.465  40.071  -8.808   1.280  -2.826  H29B  EVP  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EVP  C1   O1    SING  N  N   1  
EVP  C1   O2    SING  N  N   2  
EVP  O1   C13   SING  N  N   3  
EVP  C2   O2    SING  N  N   4  
EVP  C2   C3    DOUB  Y  N   5  
EVP  C2   C13   SING  Y  N   6  
EVP  C3   C4    SING  Y  N   7  
EVP  O3   C7    SING  N  N   8  
EVP  O3   C8    SING  N  N   9  
EVP  C4   C5    SING  N  N  10  
EVP  C4   C11   DOUB  Y  N  11  
EVP  O4   C7    DOUB  N  N  12  
EVP  C5   C6    SING  N  N  13  
EVP  C5   C14   SING  N  N  14  
EVP  O5   C16   SING  N  N  15  
EVP  O5   C20   SING  N  N  16  
EVP  C6   C7    SING  N  N  17  
EVP  C6   C9    SING  N  N  18  
EVP  O6   C17   SING  N  N  19  
EVP  O7   C18   SING  N  N  20  
EVP  O7   C21   SING  N  N  21  
EVP  C8   C9    SING  N  N  22  
EVP  O8   C10   SING  N  N  23  
EVP  O8   C22   SING  N  N  24  
EVP  C9   C10   SING  N  N  25  
EVP  O9   C22   SING  N  N  26  
EVP  O9   C23   SING  N  N  27  
EVP  C10  C11   SING  N  N  28  
EVP  O10  C24   SING  N  N  29  
EVP  O10  C25   SING  N  N  30  
EVP  C11  C12   SING  Y  N  31  
EVP  O11  C25   SING  N  N  32  
EVP  O11  C26   SING  N  N  33  
EVP  C12  C13   DOUB  Y  N  34  
EVP  O12  C27   SING  N  N  35  
EVP  O13  C28   SING  N  N  36  
EVP  C14  C15   DOUB  Y  N  37  
EVP  C14  C19   SING  Y  N  38  
EVP  C15  C16   SING  Y  N  39  
EVP  C16  C17   DOUB  Y  N  40  
EVP  C17  C18   SING  Y  N  41  
EVP  C18  C19   DOUB  Y  N  42  
EVP  C22  C28   SING  N  N  43  
EVP  C23  C24   SING  N  N  44  
EVP  C23  C26   SING  N  N  45  
EVP  C25  C29   SING  N  N  46  
EVP  C26  C27   SING  N  N  47  
EVP  C27  C28   SING  N  N  48  
EVP  C1   H1    SING  N  N  49  
EVP  C1   H1A   SING  N  N  50  
EVP  C3   H3    SING  N  N  51  
EVP  C5   H5    SING  N  N  52  
EVP  C6   H6    SING  N  N  53  
EVP  O6   HO6   SING  N  N  54  
EVP  C8   H8    SING  N  N  55  
EVP  C8   H8A   SING  N  N  56  
EVP  C9   H9    SING  N  N  57  
EVP  C10  H10   SING  N  N  58  
EVP  C12  H12   SING  N  N  59  
EVP  O12  HO12  SING  N  N  60  
EVP  O13  HO13  SING  N  N  61  
EVP  C15  H15   SING  N  N  62  
EVP  C19  H19   SING  N  N  63  
EVP  C20  H20   SING  N  N  64  
EVP  C20  H20A  SING  N  N  65  
EVP  C20  H20B  SING  N  N  66  
EVP  C21  H21   SING  N  N  67  
EVP  C21  H21A  SING  N  N  68  
EVP  C21  H21B  SING  N  N  69  
EVP  C22  H22   SING  N  N  70  
EVP  C23  H23   SING  N  N  71  
EVP  C24  H24   SING  N  N  72  
EVP  C24  H24A  SING  N  N  73  
EVP  C25  H25   SING  N  N  74  
EVP  C26  H26   SING  N  N  75  
EVP  C27  H27   SING  N  N  76  
EVP  C28  H28   SING  N  N  77  
EVP  C29  H29   SING  N  N  78  
EVP  C29  H29A  SING  N  N  79  
EVP  C29  H29B  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EVP  SMILES            ACDLabs               12.01  "O=C1OCC7C1C(c2cc(OC)c(O)c(OC)c2)c4cc3OCOc3cc4C7OC6OC5C(OC(OC5)C)C(O)C6O"  
EVP  InChI             InChI                 1.03   "InChI=1S/C29H32O13/c1-11-36-9-20-27(40-11)24(31)25(32)29(41-20)42-26-14-7-17-16(38-10-39-17)6-13(14)21(22-15(26)8-37-28(22)33)12-4-18(34-2)23(30)19(5-12)35-3/h4-7,11,15,20-22,24-27,29-32H,8-10H2,1-3H3/t11-,15+,20-,21-,22+,24-,25-,26-,27-,29+/m1/s1"  
EVP  InChIKey          InChI                 1.03   VJJPUSNTGOMMGY-MRVIYFEKSA-N  
EVP  SMILES_CANONICAL  CACTVS                3.370  "COc1cc(cc(OC)c1O)[C@H]2[C@@H]3[C@H](COC3=O)[C@H](O[C@@H]4O[C@@H]5CO[C@@H](C)O[C@H]5[C@H](O)[C@H]4O)c6cc7OCOc7cc26"  
EVP  SMILES            CACTVS                3.370  "COc1cc(cc(OC)c1O)[CH]2[CH]3[CH](COC3=O)[CH](O[CH]4O[CH]5CO[CH](C)O[CH]5[CH](O)[CH]4O)c6cc7OCOc7cc26"  
EVP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "C[C@@H]1OC[C@@H]2[C@@H](O1)[C@@H]([C@H]([C@@H](O2)O[C@@H]3c4cc5c(cc4[C@H]([C@@H]6[C@@H]3COC6=O)c7cc(c(c(c7)OC)O)OC)OCO5)O)O"  
EVP  SMILES            "OpenEye OEToolkits"  1.7.2  "CC1OCC2C(O1)C(C(C(O2)OC3c4cc5c(cc4C(C6C3COC6=O)c7cc(c(c(c7)OC)O)OC)OCO5)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EVP  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol-5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside"  
EVP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(5S,5aR,8aR,9R)-5-[[(2R,4aR,6R,7R,8R,8aS)-2-methyl-7,8-bis(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxin-6-yl]oxy]-9-(3,5-dimethoxy-4-oxidanyl-phenyl)-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EVP  "Create component"      2011-03-23  PDBJ  
EVP  "Modify aromatic_flag"  2011-06-04  RCSB  
EVP  "Modify descriptor"     2011-06-04  RCSB  
EVP  "Other modification"    2011-06-23  PDBJ  
EVP  "Modify synonyms"       2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  EVP  Etoposide  ?  ?  
2  EVP  VP-16      ?  ?  
##
