data_GPP
# 
_chem_comp.id                                    GPP 
_chem_comp.name                                  "GERANYL DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H20 O7 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        314.209 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GPP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1UBW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GPP C1   C1   C 0 1 N N N 5.120  30.752 102.497 -1.227 -0.507 0.252  C1   GPP 1  
GPP O1   O1   O 0 1 N N N 5.219  30.985 103.892 0.034  -0.525 -0.417 O1   GPP 2  
GPP C2   C2   C 0 1 N N N 4.125  31.651 101.806 -1.025 -0.816 1.713  C2   GPP 3  
GPP C3   C3   C 0 1 N N N 4.348  32.118 100.567 -1.641 -0.105 2.624  C3   GPP 4  
GPP C4   C4   C 0 1 N N N 5.648  31.678 99.905  -2.649 0.936  2.213  C4   GPP 5  
GPP C5   C5   C 0 1 N N N 3.288  32.981 99.861  -1.343 -0.329 4.084  C5   GPP 6  
GPP C6   C6   C 0 1 N N N 2.749  34.301 100.405 -0.193 0.583  4.516  C6   GPP 7  
GPP C7   C7   C 0 1 N N N 1.676  34.850 99.500  0.105  0.358  5.976  C7   GPP 8  
GPP C8   C8   C 0 1 N N N 1.225  36.083 99.738  1.321  0.058  6.357  C8   GPP 9  
GPP C9   C9   C 0 1 N N N 1.876  36.794 100.920 1.596  -0.290 7.797  C9   GPP 10 
GPP C10  C10  C 0 1 N N N 0.128  36.582 98.775  2.447  0.061  5.355  C10  GPP 11 
GPP PA   PA   P 0 1 N N R 4.873  29.997 105.146 -0.255 -0.188 -1.965 PA   GPP 12 
GPP O1A  O1A  O 0 1 N N N 3.475  30.526 105.838 -1.164 -1.210 -2.530 O1A  GPP 13 
GPP O2A  O2A  O 0 1 N N N 4.905  28.440 104.891 -0.941 1.263  -2.079 O2A  GPP 14 
GPP O3A  O3A  O 0 1 N N N 6.001  30.215 106.201 1.131  -0.192 -2.783 O3A  GPP 15 
GPP PB   PB   P 0 1 N N N 7.497  29.863 105.940 0.768  0.149  -4.314 PB   GPP 16 
GPP O1B  O1B  O 0 1 N N N 8.784  29.528 105.032 0.121  1.479  -4.383 O1B  GPP 17 
GPP O2B  O2B  O 0 1 N N N 7.912  31.325 106.399 2.116  0.162  -5.195 O2B  GPP 18 
GPP O3B  O3B  O 0 1 N N N 7.866  28.809 107.077 -0.237 -0.967 -4.890 O3B  GPP 19 
GPP H11  1H1  H 0 1 N N N 6.121  30.825 102.012 -1.884 -1.255 -0.190 H11  GPP 20 
GPP H12  2H1  H 0 1 N N N 4.892  29.680 102.291 -1.679 0.479  0.149  H12  GPP 21 
GPP H2   H2   H 0 1 N N N 3.167  31.990 102.236 -0.372 -1.624 2.008  H2   GPP 22 
GPP H41  1H4  H 0 1 N N N 5.833  32.065 98.876  -3.410 0.477  1.582  H41  GPP 23 
GPP H42  2H4  H 0 1 N N N 6.511  31.931 100.564 -3.120 1.357  3.101  H42  GPP 24 
GPP H43  3H4  H 0 1 N N N 5.713  30.564 99.905  -2.147 1.728  1.658  H43  GPP 25 
GPP H51  1H5  H 0 1 N N N 3.667  33.184 98.832  -1.059 -1.370 4.241  H51  GPP 26 
GPP H52  2H5  H 0 1 N N N 2.407  32.323 99.672  -2.229 -0.102 4.676  H52  GPP 27 
GPP H61  1H6  H 0 1 N N N 2.391  34.200 101.456 -0.477 1.623  4.359  H61  GPP 28 
GPP H62  2H6  H 0 1 N N N 3.564  35.041 100.576 0.693  0.355  3.924  H62  GPP 29 
GPP H7   H7   H 0 1 N N N 1.209  34.336 98.642  -0.684 0.446  6.708  H7   GPP 30 
GPP H91  1H9  H 0 1 N N N 1.499  37.824 101.118 2.656  -0.510 7.922  H91  GPP 31 
GPP H92  2H9  H 0 1 N N N 1.789  36.169 101.839 1.321  0.550  8.433  H92  GPP 32 
GPP H93  3H9  H 0 1 N N N 2.984  36.807 100.797 1.008  -1.165 8.077  H93  GPP 33 
GPP H101 1H10 H 0 0 N N N -0.248 37.612 98.973  2.487  1.029  4.856  H101 GPP 34 
GPP H102 2H10 H 0 0 N N N 0.478  36.499 97.719  3.391  -0.122 5.868  H102 GPP 35 
GPP H103 3H10 H 0 0 N N N -0.721 35.860 98.756  2.277  -0.721 4.615  H103 GPP 36 
GPP HOA2 2HOA H 0 0 N N N 4.703  27.865 105.620 -0.318 1.898  -1.700 HOA2 GPP 37 
GPP HOB2 2HOB H 0 0 N N N 8.823  31.110 106.239 1.855  0.371  -6.102 HOB2 GPP 38 
GPP HOB3 3HOB H 0 0 N N N 8.777  28.594 106.917 0.221  -1.816 -4.827 HOB3 GPP 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GPP C1  O1   SING N N 1  
GPP C1  C2   SING N N 2  
GPP C1  H11  SING N N 3  
GPP C1  H12  SING N N 4  
GPP O1  PA   SING N N 5  
GPP C2  C3   DOUB N E 6  
GPP C2  H2   SING N N 7  
GPP C3  C4   SING N N 8  
GPP C3  C5   SING N N 9  
GPP C4  H41  SING N N 10 
GPP C4  H42  SING N N 11 
GPP C4  H43  SING N N 12 
GPP C5  C6   SING N N 13 
GPP C5  H51  SING N N 14 
GPP C5  H52  SING N N 15 
GPP C6  C7   SING N N 16 
GPP C6  H61  SING N N 17 
GPP C6  H62  SING N N 18 
GPP C7  C8   DOUB N N 19 
GPP C7  H7   SING N N 20 
GPP C8  C9   SING N N 21 
GPP C8  C10  SING N N 22 
GPP C9  H91  SING N N 23 
GPP C9  H92  SING N N 24 
GPP C9  H93  SING N N 25 
GPP C10 H101 SING N N 26 
GPP C10 H102 SING N N 27 
GPP C10 H103 SING N N 28 
GPP PA  O1A  DOUB N N 29 
GPP PA  O2A  SING N N 30 
GPP PA  O3A  SING N N 31 
GPP O2A HOA2 SING N N 32 
GPP O3A PB   SING N N 33 
GPP PB  O1B  DOUB N N 34 
GPP PB  O2B  SING N N 35 
GPP PB  O3B  SING N N 36 
GPP O2B HOB2 SING N N 37 
GPP O3B HOB3 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GPP SMILES           ACDLabs              10.04 "O=P(OP(=O)(OC/C=C(/CC\C=C(/C)C)C)O)(O)O"                                                                                
GPP SMILES_CANONICAL CACTVS               3.341 "CC(C)=CCCC(/C)=C/CO[P@](O)(=O)O[P](O)(O)=O"                                                                             
GPP SMILES           CACTVS               3.341 "CC(C)=CCCC(C)=CCO[P](O)(=O)O[P](O)(O)=O"                                                                                
GPP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=CCC/C(=C/CO[P@@](=O)(O)OP(=O)(O)O)/C)C"                                                                             
GPP SMILES           "OpenEye OEToolkits" 1.5.0 "CC(=CCCC(=CCOP(=O)(O)OP(=O)(O)O)C)C"                                                                                    
GPP InChI            InChI                1.03  "InChI=1S/C10H20O7P2/c1-9(2)5-4-6-10(3)7-8-16-19(14,15)17-18(11,12)13/h5,7H,4,6,8H2,1-3H3,(H,14,15)(H2,11,12,13)/b10-7+" 
GPP InChIKey         InChI                1.03  GVVPGTZRZFNKDS-JXMROGBWSA-N                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GPP "SYSTEMATIC NAME" ACDLabs              10.04 "(2E)-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate"     
GPP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2E)-3,7-dimethylocta-2,6-dienyl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GPP "Create component"  1999-07-08 RCSB 
GPP "Modify descriptor" 2011-06-04 RCSB 
# 
