data_JPP
# 
_chem_comp.id                                    JPP 
_chem_comp.name                                  "Piperacillin (Open Form)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H29 N5 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-07-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.571 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JPP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4KQO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JPP S   S   S 0 1 N N N N N N -5.446 6.028  24.319 4.526  0.356  -1.337 S   JPP 1  
JPP O01 O01 O 0 1 N N N N N N -2.781 4.270  20.868 1.972  2.747  -1.436 O01 JPP 2  
JPP O02 O02 O 0 1 N N N N N N -7.628 3.596  20.911 8.038  -0.391 1.664  O02 JPP 3  
JPP O03 O03 O 0 1 N N N N N N -7.563 5.633  20.102 5.935  -0.611 2.305  O03 JPP 4  
JPP O06 O06 O 0 1 N N N N N N -1.870 6.522  24.672 -0.106 1.523  0.851  O06 JPP 5  
JPP O04 O04 O 0 1 N N N N N N 0.559  9.257  21.746 -3.157 -0.596 -1.871 O04 JPP 6  
JPP O05 O05 O 0 1 N N N N N N 1.439  7.823  25.254 -5.496 -0.865 -1.953 O05 JPP 7  
JPP O   O   O 0 1 N N N N N N 3.786  8.329  26.467 -7.945 -0.245 -0.902 O   JPP 8  
JPP N02 N02 N 0 1 N N N N N N -5.597 4.094  22.633 4.949  1.434  0.967  N02 JPP 9  
JPP N03 N03 N 0 1 N N N N N N -2.775 5.980  22.653 1.511  0.463  -0.236 N03 JPP 10 
JPP N04 N04 N 0 1 N N N N N N -0.234 8.254  23.624 -2.161 0.155  -0.034 N04 JPP 11 
JPP N01 N01 N 0 1 N N N N N N 2.196  8.874  23.421 -4.484 0.166  -0.262 N01 JPP 12 
JPP N   N   N 0 1 N N N N N N 4.770  8.696  24.436 -6.994 1.175  0.525  N   JPP 13 
JPP C17 C17 C 0 1 N N R N N N -4.669 4.557  23.665 3.877  0.588  0.371  C17 JPP 14 
JPP C19 C19 C 0 1 N N N N N N -6.758 6.093  23.097 6.291  0.315  -0.829 C19 JPP 15 
JPP C18 C18 C 0 1 N N S N N N -6.178 5.205  21.969 6.276  0.951  0.574  C18 JPP 16 
JPP C20 C20 C 0 1 N N R N N N -3.248 4.693  23.150 2.536  1.325  0.356  C20 JPP 17 
JPP C01 C01 C 0 1 N N N N N N -3.059 3.781  21.967 2.665  2.586  -0.460 C01 JPP 18 
JPP C02 C02 C 0 1 N N N N N N -8.044 5.495  23.634 6.798  -1.127 -0.761 C02 JPP 19 
JPP C03 C03 C 0 1 N N N N N N -6.993 7.533  22.629 7.147  1.141  -1.790 C03 JPP 20 
JPP C04 C04 C 0 1 N N N N N N -7.171 4.783  20.952 6.737  -0.074 1.578  C04 JPP 21 
JPP C21 C21 C 0 1 N N N N N N -2.074 6.856  23.518 0.213  0.645  0.078  C21 JPP 22 
JPP CA  CA  C 0 1 N N R N N N -1.567 8.152  23.008 -0.842 -0.242 -0.531 CA  JPP 23 
JPP C05 C05 C 0 1 Y N N N N N -2.472 9.337  23.209 -0.573 -1.676 -0.151 C05 JPP 24 
JPP C06 C06 C 0 1 N N N N N N 0.826  8.839  22.850 -3.263 -0.109 -0.762 C06 JPP 25 
JPP C07 C07 C 0 1 Y N N N N N -3.672 9.443  22.337 -0.954 -2.144 1.093  C07 JPP 26 
JPP C08 C08 C 0 1 Y N N N N N -2.236 10.316 24.150 0.049  -2.524 -1.048 C08 JPP 27 
JPP C09 C09 C 0 1 N N N N N N 3.204  9.513  22.619 -4.608 0.863  1.018  C09 JPP 28 
JPP C10 C10 C 0 1 N N N N N N 4.589  8.804  22.927 -5.777 1.844  0.984  C10 JPP 29 
JPP C11 C11 C 0 1 N N N N N N 2.377  8.318  24.648 -5.588 -0.197 -0.945 C11 JPP 30 
JPP C12 C12 C 0 1 Y N N N N N -4.545 10.502 22.465 -0.707 -3.459 1.442  C12 JPP 31 
JPP C13 C13 C 0 1 Y N N N N N -3.185 11.476 24.288 0.296  -3.838 -0.699 C13 JPP 32 
JPP C14 C14 C 0 1 N N N N N N 3.655  8.407  25.256 -6.930 0.235  -0.442 C14 JPP 33 
JPP C15 C15 C 0 1 N N N N N N 6.123  8.843  24.928 -8.286 1.518  1.125  C15 JPP 34 
JPP C16 C16 C 0 1 Y N N N N N -4.294 11.571 23.486 -0.080 -4.305 0.546  C16 JPP 35 
JPP C   C   C 0 1 N N N N N N 6.863  7.579  24.680 -8.540 0.619  2.337  C   JPP 36 
JPP H1  H1  H 0 1 N N N N N N -8.244 3.518  20.192 8.286  -1.054 2.323  H1  JPP 37 
JPP H2  H2  H 0 1 N N N N N N -6.319 3.548  23.058 4.861  1.474  1.971  H2  JPP 38 
JPP H4  H4  H 0 1 N N N N N N -2.945 6.244  21.703 1.766  -0.240 -0.854 H4  JPP 39 
JPP H5  H5  H 0 1 N N N N N N -0.071 7.926  24.554 -2.241 0.609  0.820  H5  JPP 40 
JPP H6  H6  H 0 1 N N N N N N -4.667 3.834  24.494 3.793  -0.365 0.892  H6  JPP 41 
JPP H7  H7  H 0 1 N N N N N N -5.388 5.781  21.465 6.973  1.789  0.587  H7  JPP 42 
JPP H8  H8  H 0 1 N N N N N N -2.569 4.357  23.947 2.251  1.581  1.377  H8  JPP 43 
JPP H9  H9  H 0 1 N N N N N N -3.165 2.712  22.078 3.377  3.345  -0.173 H9  JPP 44 
JPP H10 H10 H 0 1 N N N N N N -8.442 6.137  24.433 6.726  -1.584 -1.747 H10 JPP 45 
JPP H11 H11 H 0 1 N N N N N N -8.782 5.422  22.821 7.838  -1.131 -0.433 H11 JPP 46 
JPP H12 H12 H 0 1 N N N N N N -7.841 4.492  24.037 6.192  -1.693 -0.053 H12 JPP 47 
JPP H13 H13 H 0 1 N N N N N N -7.404 8.126  23.459 7.111  0.695  -2.784 H13 JPP 48 
JPP H14 H14 H 0 1 N N N N N N -6.039 7.972  22.302 6.764  2.160  -1.834 H14 JPP 49 
JPP H15 H15 H 0 1 N N N N N N -7.704 7.534  21.790 8.178  1.156  -1.436 H15 JPP 50 
JPP H16 H16 H 0 1 N N N N N N -1.420 8.041  21.924 -0.817 -0.144 -1.616 H16 JPP 51 
JPP H17 H17 H 0 1 N N N N N N -3.862 8.682  21.595 -1.443 -1.483 1.792  H17 JPP 52 
JPP H18 H18 H 0 1 N N N N N N -1.368 10.251 24.790 0.343  -2.159 -2.021 H18 JPP 53 
JPP H19 H19 H 0 1 N N N N N N 3.265  10.581 22.875 -4.774 0.134  1.811  H19 JPP 54 
JPP H20 H20 H 0 1 N N N N N N 2.957  9.406  21.552 -3.686 1.409  1.221  H20 JPP 55 
JPP H21 H21 H 0 1 N N N N N N 4.594  7.798  22.483 -5.539 2.663  0.305  H21 JPP 56 
JPP H22 H22 H 0 1 N N N N N N 5.410  9.398  22.499 -5.941 2.243  1.985  H22 JPP 57 
JPP H23 H23 H 0 1 N N N N N N -5.414 10.562 21.827 -1.004 -3.825 2.413  H23 JPP 58 
JPP H24 H24 H 0 1 N N N N N N -2.991 12.241 25.025 0.782  -4.501 -1.400 H24 JPP 59 
JPP H25 H25 H 0 1 N N N N N N 6.620  9.671  24.402 -8.273 2.561  1.442  H25 JPP 60 
JPP H26 H26 H 0 1 N N N N N N 6.103  9.054  26.007 -9.078 1.371  0.391  H26 JPP 61 
JPP H27 H27 H 0 1 N N N N N N -4.975 12.403 23.588 0.113  -5.332 0.819  H27 JPP 62 
JPP H28 H28 H 0 1 N N N N N N 7.894  7.678  25.050 -8.552 -0.423 2.020  H28 JPP 63 
JPP H29 H29 H 0 1 N N N N N N 6.363  6.752  25.206 -7.748 0.767  3.071  H29 JPP 64 
JPP H30 H30 H 0 1 N N N N N N 6.880  7.370  23.600 -9.501 0.875  2.783  H30 JPP 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JPP O03 C04 DOUB N N 1  
JPP O01 C01 DOUB N N 2  
JPP O02 C04 SING N N 3  
JPP C04 C18 SING N N 4  
JPP O04 C06 DOUB N N 5  
JPP C01 C20 SING N N 6  
JPP C18 N02 SING N N 7  
JPP C18 C19 SING N N 8  
JPP C07 C12 DOUB Y N 9  
JPP C07 C05 SING Y N 10 
JPP C12 C16 SING Y N 11 
JPP C09 C10 SING N N 12 
JPP C09 N01 SING N N 13 
JPP C03 C19 SING N N 14 
JPP N02 C17 SING N N 15 
JPP N03 C20 SING N N 16 
JPP N03 C21 SING N N 17 
JPP C06 N01 SING N N 18 
JPP C06 N04 SING N N 19 
JPP C10 N   SING N N 20 
JPP CA  C05 SING N N 21 
JPP CA  C21 SING N N 22 
JPP CA  N04 SING N N 23 
JPP C19 C02 SING N N 24 
JPP C19 S   SING N N 25 
JPP C20 C17 SING N N 26 
JPP C05 C08 DOUB Y N 27 
JPP N01 C11 SING N N 28 
JPP C16 C13 DOUB Y N 29 
JPP C21 O06 DOUB N N 30 
JPP C17 S   SING N N 31 
JPP C08 C13 SING Y N 32 
JPP N   C15 SING N N 33 
JPP N   C14 SING N N 34 
JPP C11 O05 DOUB N N 35 
JPP C11 C14 SING N N 36 
JPP C   C15 SING N N 37 
JPP C14 O   DOUB N N 38 
JPP O02 H1  SING N N 39 
JPP N02 H2  SING N N 40 
JPP N03 H4  SING N N 41 
JPP N04 H5  SING N N 42 
JPP C17 H6  SING N N 43 
JPP C18 H7  SING N N 44 
JPP C20 H8  SING N N 45 
JPP C01 H9  SING N N 46 
JPP C02 H10 SING N N 47 
JPP C02 H11 SING N N 48 
JPP C02 H12 SING N N 49 
JPP C03 H13 SING N N 50 
JPP C03 H14 SING N N 51 
JPP C03 H15 SING N N 52 
JPP CA  H16 SING N N 53 
JPP C07 H17 SING N N 54 
JPP C08 H18 SING N N 55 
JPP C09 H19 SING N N 56 
JPP C09 H20 SING N N 57 
JPP C10 H21 SING N N 58 
JPP C10 H22 SING N N 59 
JPP C12 H23 SING N N 60 
JPP C13 H24 SING N N 61 
JPP C15 H25 SING N N 62 
JPP C15 H26 SING N N 63 
JPP C16 H27 SING N N 64 
JPP C   H28 SING N N 65 
JPP C   H29 SING N N 66 
JPP C   H30 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JPP SMILES           ACDLabs              12.01 "O=C(NC(C=O)C1SC(C(N1)C(=O)O)(C)C)C(c2ccccc2)NC(=O)N3C(=O)C(=O)N(CC)CC3"                                                                                                                                                    
JPP InChI            InChI                1.03  "InChI=1S/C23H29N5O7S/c1-4-27-10-11-28(20(32)19(27)31)22(35)25-15(13-8-6-5-7-9-13)17(30)24-14(12-29)18-26-16(21(33)34)23(2,3)36-18/h5-9,12,14-16,18,26H,4,10-11H2,1-3H3,(H,24,30)(H,25,35)(H,33,34)/t14-,15-,16+,18-/m1/s1" 
JPP InChIKey         InChI                1.03  CJYMHKMECTVNSA-XLMAVXFVSA-N                                                                                                                                                                                                 
JPP SMILES_CANONICAL CACTVS               3.385 "CCN1CCN(C(=O)N[C@@H](C(=O)N[C@H](C=O)[C@@H]2N[C@@H](C(O)=O)C(C)(C)S2)c3ccccc3)C(=O)C1=O"                                                                                                                                   
JPP SMILES           CACTVS               3.385 "CCN1CCN(C(=O)N[CH](C(=O)N[CH](C=O)[CH]2N[CH](C(O)=O)C(C)(C)S2)c3ccccc3)C(=O)C1=O"                                                                                                                                          
JPP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCN1CCN(C(=O)C1=O)C(=O)N[C@H](c2ccccc2)C(=O)N[C@H](C=O)[C@@H]3N[C@H](C(S3)(C)C)C(=O)O"                                                                                                                                     
JPP SMILES           "OpenEye OEToolkits" 1.7.6 "CCN1CCN(C(=O)C1=O)C(=O)NC(c2ccccc2)C(=O)NC(C=O)C3NC(C(S3)(C)C)C(=O)O"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JPP "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,4S)-2-[(1R)-1-{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid"                          
JPP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4S)-2-[(1R)-1-[[(2R)-2-[[4-ethyl-2,3-bis(oxidanylidene)piperazin-1-yl]carbonylamino]-2-phenyl-ethanoyl]amino]-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JPP "Create component" 2013-07-18 RCSB 
JPP "Initial release"  2013-11-06 RCSB 
JPP "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            JPP 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C01 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
