data_06Q
# 
_chem_comp.id                                    06Q 
_chem_comp.name                                  "N-[(2S)-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2S,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H35 F N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        614.663 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     06Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GXG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
06Q C02 C1  C 0 1 N N N N N N 8.106  11.664 22.758 -3.777 -0.063 0.587  C02 06Q 1  
06Q C04 C2  C 0 1 N N S N N N 7.687  14.058 23.475 -1.629 -1.189 0.350  C04 06Q 2  
06Q C05 C3  C 0 1 N N N N N N 7.767  15.044 24.695 -1.780 -2.051 -0.905 C05 06Q 3  
06Q C06 C4  C 0 1 Y N N N N N 6.718  14.384 25.666 -3.190 -2.576 -0.987 C06 06Q 4  
06Q C07 C5  C 0 1 Y N N N N N 5.352  14.623 25.476 -3.514 -3.782 -0.393 C07 06Q 5  
06Q C08 C6  C 0 1 Y N N N N N 4.460  13.994 26.331 -4.807 -4.265 -0.467 C08 06Q 6  
06Q C09 C7  C 0 1 Y N N N N N 4.969  13.124 27.357 -5.778 -3.539 -1.136 C09 06Q 7  
06Q C11 C8  C 0 1 Y N N N N N 6.313  12.893 27.530 -5.453 -2.332 -1.730 C11 06Q 8  
06Q C12 C9  C 0 1 Y N N N N N 7.216  13.520 26.662 -4.161 -1.849 -1.651 C12 06Q 9  
06Q C13 C10 C 0 1 N N N N N N 8.443  14.614 22.238 -0.191 -0.764 0.498  C13 06Q 10 
06Q C15 C11 C 0 1 N N S N N N 8.461  15.637 20.005 2.184  -1.288 0.656  C15 06Q 11 
06Q C16 C12 C 0 1 N N N N N N 8.016  14.790 18.722 2.601  -1.012 2.102  C16 06Q 12 
06Q C17 C13 C 0 1 N N S N N N 8.420  13.305 18.942 3.980  -0.350 2.117  C17 06Q 13 
06Q C18 C14 C 0 1 N N N N N N 9.836  13.200 19.055 4.482  -0.252 3.560  C18 06Q 14 
06Q C19 C15 C 0 1 N N N N N N 10.331 11.831 18.830 5.721  0.651  3.583  C19 06Q 15 
06Q C20 C16 C 0 1 N N N N N N 10.100 11.335 17.428 5.293  2.079  3.242  C20 06Q 16 
06Q C22 C17 C 0 1 N N N N N N 7.815  12.568 17.646 3.881  1.023  1.517  C22 06Q 17 
06Q C24 C18 C 0 1 N N S N N N 8.111  17.187 19.898 3.052  -2.408 0.079  C24 06Q 18 
06Q C26 C19 C 0 1 N N N N N N 8.620  17.992 21.159 4.460  -1.906 -0.110 C26 06Q 19 
06Q C28 C20 C 0 1 N N N N N N 10.321 19.041 22.608 6.068  -0.377 -1.117 C28 06Q 20 
06Q C29 C21 C 0 1 Y N N N N N 10.377 18.396 24.023 6.062  0.783  -2.079 C29 06Q 21 
06Q C30 C22 C 0 1 Y N N N N N 10.794 17.085 24.230 5.912  2.073  -1.606 C30 06Q 22 
06Q C31 C23 C 0 1 Y N N N N N 10.861 16.601 25.551 5.907  3.137  -2.488 C31 06Q 23 
06Q C32 C24 C 0 1 Y N N N N N 10.508 17.458 26.678 6.052  2.911  -3.844 C32 06Q 24 
06Q C33 C25 C 0 1 Y N N N N N 10.106 18.767 26.464 6.202  1.621  -4.318 C33 06Q 25 
06Q C34 C26 C 0 1 Y N N N N N 10.038 19.258 25.158 6.213  0.558  -3.435 C34 06Q 26 
06Q C37 C27 C 0 1 Y N N N N N 8.883  10.411 23.076 -4.630 1.128  0.468  C37 06Q 27 
06Q C38 C28 C 0 1 Y N N N N N 9.060  9.210  22.363 -5.945 1.184  0.801  C38 06Q 28 
06Q C39 C29 C 0 1 Y N N N N N 9.955  8.419  23.191 -6.376 2.553  0.519  C39 06Q 29 
06Q C40 C30 C 0 1 Y N N N N N 10.543 7.117  23.113 -7.588 3.237  0.642  C40 06Q 30 
06Q C41 C31 C 0 1 Y N N N N N 11.387 6.699  24.126 -7.662 4.553  0.282  C41 06Q 31 
06Q C42 C32 C 0 1 Y N N N N N 11.685 7.534  25.257 -6.543 5.213  -0.206 C42 06Q 32 
06Q C43 C33 C 0 1 Y N N N N N 11.112 8.813  25.349 -5.338 4.556  -0.335 C43 06Q 33 
06Q C44 C34 C 0 1 Y N N N N N 10.266 9.232  24.319 -5.238 3.218  0.026  C44 06Q 34 
06Q F10 F1  F 0 1 N N N N N N 4.099  12.515 28.198 -7.042 -4.010 -1.210 F10 06Q 35 
06Q N03 N1  N 0 1 N N N N N N 8.344  12.771 23.749 -2.479 -0.001 0.231  N03 06Q 36 
06Q N14 N2  N 0 1 N N N N N N 7.662  15.103 21.142 0.777  -1.694 0.623  N14 06Q 37 
06Q N21 N3  N 0 1 N N N N N N 8.691  11.561 16.948 4.492  2.095  2.024  N21 06Q 38 
06Q N27 N4  N 0 1 N N N N N N 10.036 18.182 21.389 4.699  -0.865 -0.933 N27 06Q 39 
06Q O01 O1  O 0 1 N N N N N N 7.405  11.834 21.846 -4.242 -1.104 1.012  O01 06Q 40 
06Q O23 O2  O 0 1 N N N N N N 6.670  12.789 17.330 3.208  1.166  0.518  O23 06Q 41 
06Q O25 O3  O 0 1 N N N N N N 8.693  17.847 18.742 3.059  -3.517 0.981  O25 06Q 42 
06Q O35 O4  O 0 1 N N N N N N 7.872  18.489 21.906 5.378  -2.437 0.478  O35 06Q 43 
06Q O36 O5  O 0 1 N N N N N N 9.629  14.600 22.218 0.097  0.414  0.503  O36 06Q 44 
06Q O45 O6  O 0 1 Y N N N N N 9.625  10.391 24.207 -4.222 2.333  0.018  O45 06Q 45 
06Q H1  H1  H 0 1 N N N N N N 6.631  13.899 23.212 -1.930 -1.765 1.225  H1  06Q 46 
06Q H2  H2  H 0 1 N N N N N N 8.774  15.062 25.137 -1.565 -1.449 -1.788 H2  06Q 47 
06Q H3  H3  H 0 1 N N N N N N 7.472  16.065 24.412 -1.083 -2.888 -0.857 H3  06Q 48 
06Q H4  H4  H 0 1 N N N N N N 5.004  15.276 24.689 -2.756 -4.347 0.128  H4  06Q 49 
06Q H5  H5  H 0 1 N N N N N N 3.397  14.155 26.228 -5.059 -5.207 -0.004 H5  06Q 50 
06Q H6  H6  H 0 1 N N N N N N 6.665  12.243 28.317 -6.210 -1.766 -2.253 H6  06Q 51 
06Q H7  H7  H 0 1 N N N N N N 8.278  13.344 26.755 -3.908 -0.905 -2.110 H7  06Q 52 
06Q H8  H8  H 0 1 N N N N N N 9.539  15.509 20.179 2.315  -0.384 0.062  H8  06Q 53 
06Q H9  H9  H 0 1 N N N N N N 8.520  15.182 17.826 1.874  -0.349 2.570  H9  06Q 54 
06Q H10 H10 H 0 1 N N N N N N 6.926  14.862 18.591 2.644  -1.952 2.654  H10 06Q 55 
06Q H11 H11 H 0 1 N N N N N N 7.916  12.916 19.839 4.677  -0.950 1.531  H11 06Q 56 
06Q H12 H12 H 0 1 N N N N N N 10.132 13.518 20.066 3.704  0.177  4.191  H12 06Q 57 
06Q H13 H13 H 0 1 N N N N N N 10.297 13.866 18.311 4.744  -1.245 3.925  H13 06Q 58 
06Q H14 H14 H 0 1 N N N N N N 9.816  11.155 19.528 6.170  0.630  4.576  H14 06Q 59 
06Q H15 H15 H 0 1 N N N N N N 11.412 11.813 19.032 6.444  0.298  2.847  H15 06Q 60 
06Q H16 H16 H 0 1 N N N N N N 10.311 10.256 17.399 4.704  2.484  4.065  H16 06Q 61 
06Q H17 H17 H 0 1 N N N N N N 10.789 11.862 16.752 6.179  2.695  3.096  H17 06Q 62 
06Q H18 H18 H 0 1 N N N N N N 7.016  17.280 19.859 2.646  -2.724 -0.882 H18 06Q 63 
06Q H19 H19 H 0 1 N N N N N N 11.298 19.518 22.438 6.689  -1.178 -1.518 H19 06Q 64 
06Q H20 H20 H 0 1 N N N N N N 9.537  19.812 22.642 6.470  -0.051 -0.158 H20 06Q 65 
06Q H21 H21 H 0 1 N N N N N N 11.060 16.452 23.396 5.799  2.250  -0.546 H21 06Q 66 
06Q H22 H22 H 0 1 N N N N N N 11.177 15.584 25.732 5.789  4.145  -2.118 H22 06Q 67 
06Q H23 H23 H 0 1 N N N N N N 10.560 17.070 27.685 6.047  3.743  -4.534 H23 06Q 68 
06Q H24 H24 H 0 1 N N N N N N 9.848  19.401 27.299 6.315  1.445  -5.377 H24 06Q 69 
06Q H25 H25 H 0 1 N N N N N N 9.734  20.279 24.984 6.334  -0.450 -3.804 H25 06Q 70 
06Q H26 H26 H 0 1 N N N N N N 8.627  8.937  21.412 -6.551 0.380  1.193  H26 06Q 71 
06Q H27 H27 H 0 1 N N N N N N 10.331 6.470  22.275 -8.462 2.728  1.021  H27 06Q 72 
06Q H28 H28 H 0 1 N N N N N N 11.834 5.718  24.065 -8.599 5.083  0.376  H28 06Q 73 
06Q H29 H29 H 0 1 N N N N N N 12.347 7.179  26.033 -6.617 6.253  -0.487 H29 06Q 74 
06Q H30 H30 H 0 1 N N N N N N 11.320 9.455  26.192 -4.474 5.080  -0.716 H30 06Q 75 
06Q H31 H31 H 0 1 N N N N N N 8.921  12.638 24.555 -2.107 0.830  -0.103 H31 06Q 76 
06Q H32 H32 H 0 1 N N N N N N 6.662  15.087 21.140 0.541  -2.633 0.692  H32 06Q 77 
06Q H33 H33 H 0 1 N N N N N N 8.338  11.044 16.168 4.399  2.937  1.553  H33 06Q 78 
06Q H34 H34 H 0 1 N N N N N N 10.749 17.790 20.808 3.965  -0.440 -1.404 H34 06Q 79 
06Q H35 H35 H 0 1 N N N N N N 8.444  18.764 18.742 3.408  -3.309 1.858  H35 06Q 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
06Q N21 C20 SING N N 1  
06Q N21 C22 SING N N 2  
06Q O23 C22 DOUB N N 3  
06Q C20 C19 SING N N 4  
06Q C22 C17 SING N N 5  
06Q C16 C17 SING N N 6  
06Q C16 C15 SING N N 7  
06Q O25 C24 SING N N 8  
06Q C19 C18 SING N N 9  
06Q C17 C18 SING N N 10 
06Q C24 C15 SING N N 11 
06Q C24 C26 SING N N 12 
06Q C15 N14 SING N N 13 
06Q N14 C13 SING N N 14 
06Q C26 N27 SING N N 15 
06Q C26 O35 DOUB N N 16 
06Q N27 C28 SING N N 17 
06Q O01 C02 DOUB N N 18 
06Q O36 C13 DOUB N N 19 
06Q C13 C04 SING N N 20 
06Q C38 C37 DOUB Y N 21 
06Q C38 C39 SING Y N 22 
06Q C28 C29 SING N N 23 
06Q C02 C37 SING N N 24 
06Q C02 N03 SING N N 25 
06Q C37 O45 SING Y N 26 
06Q C40 C39 DOUB Y N 27 
06Q C40 C41 SING Y N 28 
06Q C39 C44 SING Y N 29 
06Q C04 N03 SING N N 30 
06Q C04 C05 SING N N 31 
06Q C29 C30 DOUB Y N 32 
06Q C29 C34 SING Y N 33 
06Q C41 C42 DOUB Y N 34 
06Q O45 C44 SING Y N 35 
06Q C30 C31 SING Y N 36 
06Q C44 C43 DOUB Y N 37 
06Q C05 C06 SING N N 38 
06Q C34 C33 DOUB Y N 39 
06Q C42 C43 SING Y N 40 
06Q C07 C06 DOUB Y N 41 
06Q C07 C08 SING Y N 42 
06Q C31 C32 DOUB Y N 43 
06Q C06 C12 SING Y N 44 
06Q C08 C09 DOUB Y N 45 
06Q C33 C32 SING Y N 46 
06Q C12 C11 DOUB Y N 47 
06Q C09 C11 SING Y N 48 
06Q C09 F10 SING N N 49 
06Q C04 H1  SING N N 50 
06Q C05 H2  SING N N 51 
06Q C05 H3  SING N N 52 
06Q C07 H4  SING N N 53 
06Q C08 H5  SING N N 54 
06Q C11 H6  SING N N 55 
06Q C12 H7  SING N N 56 
06Q C15 H8  SING N N 57 
06Q C16 H9  SING N N 58 
06Q C16 H10 SING N N 59 
06Q C17 H11 SING N N 60 
06Q C18 H12 SING N N 61 
06Q C18 H13 SING N N 62 
06Q C19 H14 SING N N 63 
06Q C19 H15 SING N N 64 
06Q C20 H16 SING N N 65 
06Q C20 H17 SING N N 66 
06Q C24 H18 SING N N 67 
06Q C28 H19 SING N N 68 
06Q C28 H20 SING N N 69 
06Q C30 H21 SING N N 70 
06Q C31 H22 SING N N 71 
06Q C32 H23 SING N N 72 
06Q C33 H24 SING N N 73 
06Q C34 H25 SING N N 74 
06Q C38 H26 SING N N 75 
06Q C40 H27 SING N N 76 
06Q C41 H28 SING N N 77 
06Q C42 H29 SING N N 78 
06Q C43 H30 SING N N 79 
06Q N03 H31 SING N N 80 
06Q N14 H32 SING N N 81 
06Q N21 H33 SING N N 82 
06Q N27 H34 SING N N 83 
06Q O25 H35 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
06Q InChI            InChI                1.06  "InChI=1S/C34H35FN4O6/c35-25-14-12-21(13-15-25)17-27(39-33(43)29-19-23-9-4-5-11-28(23)45-29)32(42)38-26(18-24-10-6-16-36-31(24)41)30(40)34(44)37-20-22-7-2-1-3-8-22/h1-5,7-9,11-15,19,24,26-27,30,40H,6,10,16-18,20H2,(H,36,41)(H,37,44)(H,38,42)(H,39,43)/t24-,26-,27-,30-/m0/s1" 
06Q InChIKey         InChI                1.06  RXCWWLZLSPDOKP-LRVPPHGTSA-N                                                                                                                                                                                                                                                        
06Q SMILES_CANONICAL CACTVS               3.385 "O[C@@H]([C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](Cc2ccc(F)cc2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5"                                                                                                                                                                                      
06Q SMILES           CACTVS               3.385 "O[CH]([CH](C[CH]1CCCNC1=O)NC(=O)[CH](Cc2ccc(F)cc2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5"                                                                                                                                                                                            
06Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)[C@H]([C@H](C[C@@H]2CCCNC2=O)NC(=O)[C@H](Cc3ccc(cc3)F)NC(=O)c4cc5ccccc5o4)O"                                                                                                                                                                                     
06Q SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)C(C(CC2CCCNC2=O)NC(=O)C(Cc3ccc(cc3)F)NC(=O)c4cc5ccccc5o4)O"                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           06Q 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
06Q "Create component" 2022-09-29 PDBC 
06Q "Initial release"  2023-06-07 RCSB 
06Q "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            06Q 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C24 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
